mRNA_E-siliculosus-1a_F_contig1032.265.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Match: A0A6H5JL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL40_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.950e-24 Identity = 70/112 (62.50%), Postives = 76/112 (67.86%), Query Frame = 1 Query: 946 GSLVATLPSAGRERRIERTCESSTMRCSSSGRGVGFCGRSRLVALPPPTRVRTVTWDR-----------------------PVGELVKGVAWPRGLTRITFGDGFSQSLSLV 1212
GS+VATL AGRERRIER+ S+T+RCSS+ CGRSR V LPPPTRVRTVTWDR PVGELVKGVAWP GLTRITFGDGF+QSLSLV
Sbjct: 3 GSMVATLSLAGRERRIERS-GSATVRCSSN-----VCGRSRRVVLPPPTRVRTVTWDRCLPRFLVLLESAVVMGWRRWCPRPVGELVKGVAWPPGLTRITFGDGFNQSLSLV 108
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Match: D8LHF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF1_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 4.690e-10 Identity = 46/77 (59.74%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 985 RRIERTCESSTMRCSS-SGRGVGFCGRSRLVALPPPTRVRTVTWDRPVGELVKGVAWPRGLTRITFGDGFSQSLSLV 1212
R + + C SS +S S GVG G + +P RT DRPVGELVKGVAWPRGLTRITFGDGFSQSLSLV
Sbjct: 36 RHLGQACSSSLRAPASLSDVGVGV-GDGFALVVPKVYSQRT---DRPVGELVKGVAWPRGLTRITFGDGFSQSLSLV 108
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Match: A0A6H5L639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L639_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 9.530e-5 Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 175 LRVVVLSGWIPPGRMKQLQLASVTICRDCRDGDPWHVRVSENTPRHLW 318
LR+V+LS +P +KQLQLAS +IC DCR+ +HV V+ TPR LW
Sbjct: 104 LRIVLLSELVPVTIIKQLQLASSSICGDCRELTEFHVNVNSRTPRRLW 151 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1032.265.1 >prot_E-siliculosus-1a_F_contig1032.265.1 ID=prot_E-siliculosus-1a_F_contig1032.265.1|Name=mRNA_E-siliculosus-1a_F_contig1032.265.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=569bp MIDQSDAVPSVGAETPTTMVGQSETAPTGAGSAAESAGAGAQQRLASVQKback to top mRNA from alignment at E-siliculosus-1a_F_contig1032:19836..24981- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1032.265.1 ID=mRNA_E-siliculosus-1a_F_contig1032.265.1|Name=mRNA_E-siliculosus-1a_F_contig1032.265.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5146bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1032:19836..24981- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1032:19836..24981- >mRNA_E-siliculosus-1a_F_contig1032.265.1 ID=mRNA_E-siliculosus-1a_F_contig1032.265.1|Name=mRNA_E-siliculosus-1a_F_contig1032.265.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1032:19836..24981- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |