mRNA_E-siliculosus-1a_F_contig1032.265.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Match: A0A6H5JL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL40_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.950e-24 Identity = 70/112 (62.50%), Postives = 76/112 (67.86%), Query Frame = 1
Query: 946 GSLVATLPSAGRERRIERTCESSTMRCSSSGRGVGFCGRSRLVALPPPTRVRTVTWDR-----------------------PVGELVKGVAWPRGLTRITFGDGFSQSLSLV 1212
GS+VATL AGRERRIER+ S+T+RCSS+ CGRSR V LPPPTRVRTVTWDR PVGELVKGVAWP GLTRITFGDGF+QSLSLV
Sbjct: 3 GSMVATLSLAGRERRIERS-GSATVRCSSN-----VCGRSRRVVLPPPTRVRTVTWDRCLPRFLVLLESAVVMGWRRWCPRPVGELVKGVAWPPGLTRITFGDGFNQSLSLV 108
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Match: D8LHF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF1_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 4.690e-10 Identity = 46/77 (59.74%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 985 RRIERTCESSTMRCSS-SGRGVGFCGRSRLVALPPPTRVRTVTWDRPVGELVKGVAWPRGLTRITFGDGFSQSLSLV 1212
R + + C SS +S S GVG G + +P RT DRPVGELVKGVAWPRGLTRITFGDGFSQSLSLV
Sbjct: 36 RHLGQACSSSLRAPASLSDVGVGV-GDGFALVVPKVYSQRT---DRPVGELVKGVAWPRGLTRITFGDGFSQSLSLV 108
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Match: A0A6H5L639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L639_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 9.530e-5 Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 175 LRVVVLSGWIPPGRMKQLQLASVTICRDCRDGDPWHVRVSENTPRHLW 318
LR+V+LS +P +KQLQLAS +IC DCR+ +HV V+ TPR LW
Sbjct: 104 LRIVLLSELVPVTIIKQLQLASSSICGDCRELTEFHVNVNSRTPRRLW 151 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1032.265.1 >prot_E-siliculosus-1a_F_contig1032.265.1 ID=prot_E-siliculosus-1a_F_contig1032.265.1|Name=mRNA_E-siliculosus-1a_F_contig1032.265.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=569bp MIDQSDAVPSVGAETPTTMVGQSETAPTGAGSAAESAGAGAQQRLASVQKback to top mRNA from alignment at E-siliculosus-1a_F_contig1032:19836..24981- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1032.265.1 ID=mRNA_E-siliculosus-1a_F_contig1032.265.1|Name=mRNA_E-siliculosus-1a_F_contig1032.265.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5146bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1032:19836..24981- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1032:19836..24981- >mRNA_E-siliculosus-1a_F_contig1032.265.1 ID=mRNA_E-siliculosus-1a_F_contig1032.265.1|Name=mRNA_E-siliculosus-1a_F_contig1032.265.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1032:19836..24981- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |