mRNA_E-siliculosus-1a_F_contig14505.2632.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14505.2632.1
Unique NamemRNA_E-siliculosus-1a_F_contig14505.2632.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A2A4HU32_9GAMM (LysR family transcriptional regulator n=4 Tax=Halomonas TaxID=2745 RepID=A0A2A4HU32_9GAMM)

HSP 1 Score: 235 bits (599), Expect = 1.850e-75
Identity = 116/122 (95.08%), Postives = 118/122 (96.72%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGG 366
            GAPETPDEIL HEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMA+GALVPIMTRYPPPPAGAYVIRPPGQHPARK+RILTEMLIEYFEQSP L  G
Sbjct:  174 GAPETPDEILAHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMATGALVPIMTRYPPPPAGAYVIRPPGQHPARKVRILTEMLIEYFEQSPYLWSG 295          
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A261U1S3_9BORD (LysR family transcriptional regulator n=1 Tax=Bordetella genomosp. 4 TaxID=463044 RepID=A0A261U1S3_9BORD)

HSP 1 Score: 205 bits (521), Expect = 8.610e-64
Identity = 95/123 (77.24%), Postives = 111/123 (90.24%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGGG 369
            GAP+TPD++L H+ALMQGTEAWQF+DGDKI++V PQGRFKAD+  ALAAAA AGLG+AWLPD +T E++ASGALVP+MT YPPPPAG YVIRPPGQHPARKIR+L E+LIEYFEQ+P LRG G
Sbjct:  174 GAPQTPDDLLDHQALMQGTEAWQFLDGDKIVSVRPQGRFKADNGIALAAAAAAGLGIAWLPDCVTYEYVASGALVPVMTGYPPPPAGIYVIRPPGQHPARKIRVLIELLIEYFEQAPYLRGSG 296          
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A7V7KXU0_9PSED (LysR family transcriptional regulator n=1 Tax=Pseudomonas laoshanensis TaxID=2268758 RepID=A0A7V7KXU0_9PSED)

HSP 1 Score: 205 bits (521), Expect = 1.220e-63
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGGGLYIAPS 387
            GAPETPD+IL HEALMQG EAWQFMDGD+II VHPQGRFKADS TALAAAA AG+G+AWLP FIT E+MASGALVPIMTRYPPP AGAYV+RPPGQH  RKI++LTE+LI+YFEQS  L G G    P+
Sbjct:  174 GAPETPDDILAHEALMQGNEAWQFMDGDRIITVHPQGRFKADSGTALAAAAAAGIGIAWLPYFITHEYMASGALVPIMTRYPPPLAGAYVVRPPGQHSTRKIKVLTEILIKYFEQSAYLWGEGCASRPA 302          
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A4U6BY19_9HYPH (LysR family transcriptional regulator n=4 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A4U6BY19_9HYPH)

HSP 1 Score: 204 bits (518), Expect = 2.450e-63
Identity = 98/121 (80.99%), Postives = 110/121 (90.91%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRG 363
            GAPETP E+ TH+ALMQGTEAWQ MDGDKI+ V PQGRFKAD+A ALAAAA AGLG+AWLPD IT +++ASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIR LTEMLIE+FE++P+L G
Sbjct:  174 GAPETPGELATHQALMQGTEAWQLMDGDKIVTVQPQGRFKADNAAALAAAAAAGLGIAWLPDCITYDYVASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRTLTEMLIEHFERNPHLWG 294          
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: G9AJ58_RHIFH (LysR family transcriptional regulator n=1 Tax=Rhizobium fredii (strain HH103) TaxID=1117943 RepID=G9AJ58_RHIFH)

HSP 1 Score: 203 bits (517), Expect = 3.470e-63
Identity = 92/123 (74.80%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGGG 369
            G+PE P+E+++H+ALMQGTEAWQFMDGD+II VHP+GRFKAD+ATALAAAA+AGLG+AW+PD +T +++ASGALVP+MTR+PPPPAG YVIRPPGQHP+RK+R+LTEMLIE FEQ+PN  G G
Sbjct:  174 GSPEKPEELVSHQALMQGTEAWQFMDGDEIITVHPRGRFKADNATALAAAALAGLGIAWIPDGVTHQYLASGALVPVMTRHPPPPAGVYVIRPPGQHPSRKVRVLTEMLIECFEQAPNFAGVG 296          
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A1R3V2F2_9HYPH (Transcriptional regulator, LysR family n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1R3V2F2_9HYPH)

HSP 1 Score: 203 bits (517), Expect = 3.470e-63
Identity = 93/121 (76.86%), Postives = 112/121 (92.56%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRG 363
            G+P+TPDE++TH+ALMQGTEAWQFMDGDKI+ V PQGRFKAD+ATALAAAAVAGLG+AWLPD IT +H+ SGALVPIMTRYPPP AGAYV+RPPG+HP RK+R+LT+MLIEYF ++P++ G
Sbjct:  174 GSPQTPDELVTHQALMQGTEAWQFMDGDKIVTVQPQGRFKADNATALAAAAVAGLGIAWLPDCITYDHVTSGALVPIMTRYPPPSAGAYVVRPPGKHPTRKVRVLTDMLIEYFARNPDVWG 294          
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A1J8P928_9GAMM (LysR family transcriptional regulator n=1 Tax=Halomonas sp. QHL1 TaxID=1123773 RepID=A0A1J8P928_9GAMM)

HSP 1 Score: 203 bits (517), Expect = 4.770e-63
Identity = 99/119 (83.19%), Postives = 109/119 (91.60%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNL 357
            GAPETPDEIL H+ALM GTEAWQFMDGDKII VHP+GRFKADS TALAAAAVAGLG+AWLPD +T E MASGALVPIMTRYP PPAGAYVIRPP QHPARKIRILT+++IE+FEQ+ +L
Sbjct:  174 GAPETPDEILAHQALMHGTEAWQFMDGDKIITVHPRGRFKADSGTALAAAAVAGLGIAWLPDCLTHEDMASGALVPIMTRYPLPPAGAYVIRPPSQHPARKIRILTDIMIEHFEQASHL 292          
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A0Q6NCS3_9BURK (LysR family transcriptional regulator n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A0Q6NCS3_9BURK)

HSP 1 Score: 202 bits (514), Expect = 1.010e-62
Identity = 93/121 (76.86%), Postives = 111/121 (91.74%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRG 363
            G+PETPDE+  H+ALMQGTEAWQ MDGD+II VHPQGRFK+D+ TAL AAA AGLG+A+LPD++T EH+ASGALVP+MTR+PPPPAGAYVIRPPGQHPARKIR+LTE+LIEY ++SP+L G
Sbjct:  174 GSPETPDELAAHQALMQGTEAWQLMDGDRIITVHPQGRFKSDNGTALVAAATAGLGIAYLPDWLTHEHLASGALVPVMTRHPPPPAGAYVIRPPGQHPARKIRVLTELLIEYCDRSPHLAG 294          
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A0R3MS99_9BRAD (LysR family transcriptional regulator n=6 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0R3MS99_9BRAD)

HSP 1 Score: 202 bits (514), Expect = 1.210e-62
Identity = 97/123 (78.86%), Postives = 112/123 (91.06%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGGG 369
            G+P+TPDE++TH+ALMQGTEAWQFMDGDKI+ V PQGRFKAD+ATALAAAA AGLGVAWLPD IT E++A+GALVPIMTRYPPP AGAYV+RPPGQHPARK+RILTEMLI+  E +P+L G G
Sbjct:  174 GSPQTPDELVTHQALMQGTEAWQFMDGDKIVTVQPQGRFKADNATALAAAAAAGLGVAWLPDCITHEYVAAGALVPIMTRYPPPSAGAYVVRPPGQHPARKVRILTEMLIKSIELNPHLWGIG 296          
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A4U0YC01_9GAMM (LysR family transcriptional regulator n=2 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A4U0YC01_9GAMM)

HSP 1 Score: 202 bits (515), Expect = 1.310e-62
Identity = 96/120 (80.00%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLR 360
            GAPETPDEIL H+ALM GTEAWQFMDGDKII VHPQGRFKADS TALAAAAVAGLG+AWLPD +T E  ASGALVPIMT YPPPPA AYVIRPP QHPARK+R+LTE++I+YF ++P+L+
Sbjct:  174 GAPETPDEILAHQALMHGTEAWQFMDGDKIIKVHPQGRFKADSGTALAAAAVAGLGIAWLPDCLTHEERASGALVPIMTHYPPPPAAAYVIRPPSQHPARKVRVLTEIMIDYFGRAPHLQ 293          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A4HU32_9GAMM1.850e-7595.08LysR family transcriptional regulator n=4 Tax=Halo... [more]
A0A261U1S3_9BORD8.610e-6477.24LysR family transcriptional regulator n=1 Tax=Bord... [more]
A0A7V7KXU0_9PSED1.220e-6377.52LysR family transcriptional regulator n=1 Tax=Pseu... [more]
A0A4U6BY19_9HYPH2.450e-6380.99LysR family transcriptional regulator n=4 Tax=Phyl... [more]
G9AJ58_RHIFH3.470e-6374.80LysR family transcriptional regulator n=1 Tax=Rhiz... [more]
A0A1R3V2F2_9HYPH3.470e-6376.86Transcriptional regulator, LysR family n=3 Tax=Alp... [more]
A0A1J8P928_9GAMM4.770e-6383.19LysR family transcriptional regulator n=1 Tax=Halo... [more]
A0A0Q6NCS3_9BURK1.010e-6276.86LysR family transcriptional regulator n=3 Tax=uncl... [more]
A0A0R3MS99_9BRAD1.210e-6278.86LysR family transcriptional regulator n=6 Tax=Hyph... [more]
A0A4U0YC01_9GAMM1.310e-6280.00LysR family transcriptional regulator n=2 Tax=Pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14505contigE-siliculosus-1a_F_contig14505:709..1098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size390
Model size390
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelProteobacteria
COG Functional cat.K
EggNOG OGs1MW16@1224,COG0583@1,COG0583@2
EggNOG free text desc.Transcriptional regulator
Seed eggNOG ortholog1380358.JADJ01000001_gene1177
Seed ortholog evalue1.5e-57
Seed ortholog score228.8
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927961.7267535-CDS-E-siliculosus-1a_F_contig14505:708..10981622927961.7267535-CDS-E-siliculosus-1a_F_contig14505:708..1098Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14505 709..1098 -
1696318754.7409205-CDS-E-siliculosus-1a_F_contig14505:708..10981696318754.7409205-CDS-E-siliculosus-1a_F_contig14505:708..1098Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14505 709..1098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14505.2632.1prot_E-siliculosus-1a_F_contig14505.2632.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14505 709..1098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14505.2632.1

>prot_E-siliculosus-1a_F_contig14505.2632.1 ID=prot_E-siliculosus-1a_F_contig14505.2632.1|Name=mRNA_E-siliculosus-1a_F_contig14505.2632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=130bp
GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAA
AVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPAR
KIRILTEMLIEYFEQSPNLRGGGLYIAPS*
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mRNA from alignment at E-siliculosus-1a_F_contig14505:709..1098-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14505.2632.1 ID=mRNA_E-siliculosus-1a_F_contig14505.2632.1|Name=mRNA_E-siliculosus-1a_F_contig14505.2632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14505:709..1098- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGCACCGGAGACGCCAGATGAGATCCTGACCCATGAGGCTCTCATGCA GGGCACGGAAGCCTGGCAATTCATGGACGGAGACAAGATCATTGCGGTGC ACCCGCAAGGGCGATTCAAGGCCGACAGCGCCACAGCCCTCGCCGCCGCC GCTGTAGCTGGGCTTGGCGTAGCTTGGCTGCCCGATTTCATTACCCAGGA ACATATGGCATCTGGCGCGCTTGTGCCAATTATGACGCGCTATCCTCCGC CTCCGGCCGGTGCCTATGTTATCCGCCCGCCAGGCCAGCACCCTGCACGG AAGATCCGGATCCTTACCGAGATGCTGATCGAGTACTTTGAACAGTCTCC GAATCTAAGGGGTGGGGGCTTGTACATCGCGCCCAGCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14505:709..1098-

>mRNA_E-siliculosus-1a_F_contig14505.2632.1 ID=mRNA_E-siliculosus-1a_F_contig14505.2632.1|Name=mRNA_E-siliculosus-1a_F_contig14505.2632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14505:709..1098- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGCACCGGAGACGCCAGATGAGATCCTGACCCATGAGGCTCTCATGCA
GGGCACGGAAGCCTGGCAATTCATGGACGGAGACAAGATCATTGCGGTGC
ACCCGCAAGGGCGATTCAAGGCCGACAGCGCCACAGCCCTCGCCGCCGCC
GCTGTAGCTGGGCTTGGCGTAGCTTGGCTGCCCGATTTCATTACCCAGGA
ACATATGGCATCTGGCGCGCTTGTGCCAATTATGACGCGCTATCCTCCGC
CTCCGGCCGGTGCCTATGTTATCCGCCCGCCAGGCCAGCACCCTGCACGG
AAGATCCGGATCCTTACCGAGATGCTGATCGAGTACTTTGAACAGTCTCC
GAATCTAAGGGGTGGGGGCTTGTACATCGCGCCCAGCTGAGGGGCACCGG
AGACGCCAGATGAGATCCTGACCCATGAGGCTCTCATGCAGGGCACGGAA
GCCTGGCAATTCATGGACGGAGACAAGATCATTGCGGTGCACCCGCAAGG
GCGATTCAAGGCCGACAGCGCCACAGCCCTCGCCGCCGCCGCTGTAGCTG
GGCTTGGCGTAGCTTGGCTGCCCGATTTCATTACCCAGGAACATATGGCA
TCTGGCGCGCTTGTGCCAATTATGACGCGCTATCCTCCGCCTCCGGCCGG
TGCCTATGTTATCCGCCCGCCAGGCCAGCACCCTGCACGGAAGATCCGGA
TCCTTACCGAGATGCTGATCGAGTACTTTGAACAGTCTCCGAATCTAAGG
GGTGGGGGCTTGTACATCGCGCCCAGCTGA
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