mRNA_E-siliculosus-1a_F_contig14505.2632.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A2A4HU32_9GAMM (LysR family transcriptional regulator n=4 Tax=Halomonas TaxID=2745 RepID=A0A2A4HU32_9GAMM) HSP 1 Score: 235 bits (599), Expect = 1.850e-75 Identity = 116/122 (95.08%), Postives = 118/122 (96.72%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGG 366
GAPETPDEIL HEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMA+GALVPIMTRYPPPPAGAYVIRPPGQHPARK+RILTEMLIEYFEQSP L G
Sbjct: 174 GAPETPDEILAHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMATGALVPIMTRYPPPPAGAYVIRPPGQHPARKVRILTEMLIEYFEQSPYLWSG 295
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A261U1S3_9BORD (LysR family transcriptional regulator n=1 Tax=Bordetella genomosp. 4 TaxID=463044 RepID=A0A261U1S3_9BORD) HSP 1 Score: 205 bits (521), Expect = 8.610e-64 Identity = 95/123 (77.24%), Postives = 111/123 (90.24%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGGG 369
GAP+TPD++L H+ALMQGTEAWQF+DGDKI++V PQGRFKAD+ ALAAAA AGLG+AWLPD +T E++ASGALVP+MT YPPPPAG YVIRPPGQHPARKIR+L E+LIEYFEQ+P LRG G
Sbjct: 174 GAPQTPDDLLDHQALMQGTEAWQFLDGDKIVSVRPQGRFKADNGIALAAAAAAGLGIAWLPDCVTYEYVASGALVPVMTGYPPPPAGIYVIRPPGQHPARKIRVLIELLIEYFEQAPYLRGSG 296
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A7V7KXU0_9PSED (LysR family transcriptional regulator n=1 Tax=Pseudomonas laoshanensis TaxID=2268758 RepID=A0A7V7KXU0_9PSED) HSP 1 Score: 205 bits (521), Expect = 1.220e-63 Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGGGLYIAPS 387
GAPETPD+IL HEALMQG EAWQFMDGD+II VHPQGRFKADS TALAAAA AG+G+AWLP FIT E+MASGALVPIMTRYPPP AGAYV+RPPGQH RKI++LTE+LI+YFEQS L G G P+
Sbjct: 174 GAPETPDDILAHEALMQGNEAWQFMDGDRIITVHPQGRFKADSGTALAAAAAAGIGIAWLPYFITHEYMASGALVPIMTRYPPPLAGAYVVRPPGQHSTRKIKVLTEILIKYFEQSAYLWGEGCASRPA 302
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A4U6BY19_9HYPH (LysR family transcriptional regulator n=4 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A4U6BY19_9HYPH) HSP 1 Score: 204 bits (518), Expect = 2.450e-63 Identity = 98/121 (80.99%), Postives = 110/121 (90.91%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRG 363
GAPETP E+ TH+ALMQGTEAWQ MDGDKI+ V PQGRFKAD+A ALAAAA AGLG+AWLPD IT +++ASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIR LTEMLIE+FE++P+L G
Sbjct: 174 GAPETPGELATHQALMQGTEAWQLMDGDKIVTVQPQGRFKADNAAALAAAAAAGLGIAWLPDCITYDYVASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRTLTEMLIEHFERNPHLWG 294
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: G9AJ58_RHIFH (LysR family transcriptional regulator n=1 Tax=Rhizobium fredii (strain HH103) TaxID=1117943 RepID=G9AJ58_RHIFH) HSP 1 Score: 203 bits (517), Expect = 3.470e-63 Identity = 92/123 (74.80%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGGG 369
G+PE P+E+++H+ALMQGTEAWQFMDGD+II VHP+GRFKAD+ATALAAAA+AGLG+AW+PD +T +++ASGALVP+MTR+PPPPAG YVIRPPGQHP+RK+R+LTEMLIE FEQ+PN G G
Sbjct: 174 GSPEKPEELVSHQALMQGTEAWQFMDGDEIITVHPRGRFKADNATALAAAALAGLGIAWIPDGVTHQYLASGALVPVMTRHPPPPAGVYVIRPPGQHPSRKVRVLTEMLIECFEQAPNFAGVG 296
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A1R3V2F2_9HYPH (Transcriptional regulator, LysR family n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1R3V2F2_9HYPH) HSP 1 Score: 203 bits (517), Expect = 3.470e-63 Identity = 93/121 (76.86%), Postives = 112/121 (92.56%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRG 363
G+P+TPDE++TH+ALMQGTEAWQFMDGDKI+ V PQGRFKAD+ATALAAAAVAGLG+AWLPD IT +H+ SGALVPIMTRYPPP AGAYV+RPPG+HP RK+R+LT+MLIEYF ++P++ G
Sbjct: 174 GSPQTPDELVTHQALMQGTEAWQFMDGDKIVTVQPQGRFKADNATALAAAAVAGLGIAWLPDCITYDHVTSGALVPIMTRYPPPSAGAYVVRPPGKHPTRKVRVLTDMLIEYFARNPDVWG 294
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A1J8P928_9GAMM (LysR family transcriptional regulator n=1 Tax=Halomonas sp. QHL1 TaxID=1123773 RepID=A0A1J8P928_9GAMM) HSP 1 Score: 203 bits (517), Expect = 4.770e-63 Identity = 99/119 (83.19%), Postives = 109/119 (91.60%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNL 357
GAPETPDEIL H+ALM GTEAWQFMDGDKII VHP+GRFKADS TALAAAAVAGLG+AWLPD +T E MASGALVPIMTRYP PPAGAYVIRPP QHPARKIRILT+++IE+FEQ+ +L
Sbjct: 174 GAPETPDEILAHQALMHGTEAWQFMDGDKIITVHPRGRFKADSGTALAAAAVAGLGIAWLPDCLTHEDMASGALVPIMTRYPLPPAGAYVIRPPSQHPARKIRILTDIMIEHFEQASHL 292
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A0Q6NCS3_9BURK (LysR family transcriptional regulator n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A0Q6NCS3_9BURK) HSP 1 Score: 202 bits (514), Expect = 1.010e-62 Identity = 93/121 (76.86%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRG 363
G+PETPDE+ H+ALMQGTEAWQ MDGD+II VHPQGRFK+D+ TAL AAA AGLG+A+LPD++T EH+ASGALVP+MTR+PPPPAGAYVIRPPGQHPARKIR+LTE+LIEY ++SP+L G
Sbjct: 174 GSPETPDELAAHQALMQGTEAWQLMDGDRIITVHPQGRFKSDNGTALVAAATAGLGIAYLPDWLTHEHLASGALVPVMTRHPPPPAGAYVIRPPGQHPARKIRVLTELLIEYCDRSPHLAG 294
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A0R3MS99_9BRAD (LysR family transcriptional regulator n=6 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0R3MS99_9BRAD) HSP 1 Score: 202 bits (514), Expect = 1.210e-62 Identity = 97/123 (78.86%), Postives = 112/123 (91.06%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLRGGG 369
G+P+TPDE++TH+ALMQGTEAWQFMDGDKI+ V PQGRFKAD+ATALAAAA AGLGVAWLPD IT E++A+GALVPIMTRYPPP AGAYV+RPPGQHPARK+RILTEMLI+ E +P+L G G
Sbjct: 174 GSPQTPDELVTHQALMQGTEAWQFMDGDKIVTVQPQGRFKADNATALAAAAAAGLGVAWLPDCITHEYVAAGALVPIMTRYPPPSAGAYVVRPPGQHPARKVRILTEMLIKSIELNPHLWGIG 296
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Match: A0A4U0YC01_9GAMM (LysR family transcriptional regulator n=2 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A4U0YC01_9GAMM) HSP 1 Score: 202 bits (515), Expect = 1.310e-62 Identity = 96/120 (80.00%), Postives = 108/120 (90.00%), Query Frame = 1
Query: 1 GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAAVAGLGVAWLPDFITQEHMASGALVPIMTRYPPPPAGAYVIRPPGQHPARKIRILTEMLIEYFEQSPNLR 360
GAPETPDEIL H+ALM GTEAWQFMDGDKII VHPQGRFKADS TALAAAAVAGLG+AWLPD +T E ASGALVPIMT YPPPPA AYVIRPP QHPARK+R+LTE++I+YF ++P+L+
Sbjct: 174 GAPETPDEILAHQALMHGTEAWQFMDGDKIIKVHPQGRFKADSGTALAAAAVAGLGIAWLPDCLTHEERASGALVPIMTHYPPPPAAAYVIRPPSQHPARKVRVLTEIMIDYFGRAPHLQ 293 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14505.2632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14505.2632.1 >prot_E-siliculosus-1a_F_contig14505.2632.1 ID=prot_E-siliculosus-1a_F_contig14505.2632.1|Name=mRNA_E-siliculosus-1a_F_contig14505.2632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=130bp GAPETPDEILTHEALMQGTEAWQFMDGDKIIAVHPQGRFKADSATALAAAback to top mRNA from alignment at E-siliculosus-1a_F_contig14505:709..1098- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14505.2632.1 ID=mRNA_E-siliculosus-1a_F_contig14505.2632.1|Name=mRNA_E-siliculosus-1a_F_contig14505.2632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14505:709..1098- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14505:709..1098- >mRNA_E-siliculosus-1a_F_contig14505.2632.1 ID=mRNA_E-siliculosus-1a_F_contig14505.2632.1|Name=mRNA_E-siliculosus-1a_F_contig14505.2632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14505:709..1098- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |