|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1448.2617.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE) HSP 1 Score: 287 bits (734), Expect = 1.640e-95 Identity = 166/178 (93.26%), Postives = 171/178 (96.07%), Query Frame = 1
Query: 268 MSGTERSSSGDDGARGASQQSDERSREANRIHCKETRDRRRERERALCEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFNRRLQMPPETMVGRSLLSIVDERDALSLRNAIFQVLNEAQHXXXXXXXXXXXX-AVVHVRIAHGQIFCEASMSIACGSHGLVVVTRLYSSGS 798
MSGTERS+SG+ ARGASQ+SDERSREANRIHCKETRDRRRERERAL EHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNF RLQMPPE MVGRSLLSIVDER+ALSLRNAIFQVLNEAQHXXXXXXXXXXXX AVVHVRIAHGQIFCEASMSIACGSHGL+VVTRLYSSGS
Sbjct: 1 MSGTERSNSGNGRARGASQKSDERSREANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYSSGS 178
BLAST of mRNA_E-siliculosus-1a_F_contig1448.2617.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE) HSP 1 Score: 129 bits (325), Expect = 7.890e-34 Identity = 71/148 (47.97%), Postives = 93/148 (62.84%), Query Frame = 1
Query: 349 ANRIHCKETRDRRRERERALCEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFNRRLQMPPETMVGRSLLSIVDERDALSLRNAIFQVLNEAQHXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLVVVTRLYSS 792
ANRIHC+ETR+R+R E L E VE+L L +++VE GPDLFS H DAPFS+ C+N+ +LQ+ PE VG+ L SIVD DA L A+ +VL + +V +R++ G I C ASMS+ GS GLVVVTRLY +
Sbjct: 23 ANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTNIGDSEPGSGK---LVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYGN 167
BLAST of mRNA_E-siliculosus-1a_F_contig1448.2617.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 1.260e-13 Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 1
Query: 421 ELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFNRRLQMPPETMVGRSLLSIVDERDALSLRNAIFQVLNE-----------------------------AQHXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLVVVTRL 783
++L++ + IVE+GPDLFSLH T+DAPFS++ + N + Q+P E ++G+ L ++VD D L A+ VL XXXXXX VV + + G C ASMSIA G GL+VVTR+
Sbjct: 11 DVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNSRDGGXXXXXXXXXXXXXXXXXXXXXXXVAVGSGTVVELNVMCGGASCLASMSIALGCRGLIVVTRM 160
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 534 |
| Model size | 801 |
| Exons | 5 |
| Ec32 ortholog | Ec-14_002600.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1448.2617.1 >prot_E-siliculosus-1a_F_contig1448.2617.1 ID=prot_E-siliculosus-1a_F_contig1448.2617.1|Name=mRNA_E-siliculosus-1a_F_contig1448.2617.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=178bp
MSGTERSSSGDDGARGASQQSDERSREANRIHCKETRDRRRERERALCEH
VELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFNRRLQMPPETMVGR
SLLSIVDERDALSLRNAIFQVLNEAQHHHAGGGSDPPGGAVVHVRIAHGQ
IFCEASMSIACGSHGLVVVTRLYSSGS* back to topmRNA from alignment at E-siliculosus-1a_F_contig1448:26214..31961- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1448.2617.1 ID=mRNA_E-siliculosus-1a_F_contig1448.2617.1|Name=mRNA_E-siliculosus-1a_F_contig1448.2617.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5748bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1448:26214..31961- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTAGCCTCGTTTTGTGTTTTTGCCTCCCGCGGGAGACGAGGACAAGCG
AGGCGGGACGGGTTTGGGATCCAGTTGGCGGTGGATCGGCAGAGAGGGGA
ACACGAAGAACGAGTCGGTCCGCTGCAACCCTGGTGAGTGAGCCCGTATC
GTCCGATAGCGACGTAAGACCTCGGGCCGACAGAGGCAAATGCGGTGGTA
TCATTTTTCGCCATTGTCTGTTCGCCGAACGGGCAATGCATCTGGCCGCT
GTCCGGTCCTCCCGATCCGTGTTGCATAGTCTATGCGTGCTGGTTGCCTG
GGAACGGAAATATTACCATTTATTTCCTGTGCCATCATATATAGAGACGA
ACATAGAGATGTGGCTGCCGAGCATACACTAGCTCTTCATCGAACCAAGG
CGTGAGTCATTGCTTACAGCATGCAGAATCCAGGCCTATAATAGCACCTG
CAGATAGATGCAACACCACAAACTCTGATGATGAAGTTTGTAGCATAGCA
TCAGGACATCAGGATCCCGGGTGCCTCCGCCAAAGAAAATCAAGTGTGTT
GATGCTTCCGAAAGGGAGCGTTGCATGGGCAGCCTTGGTACTTTAACATC
CTGGGAATTGCTGTAGGCATCGGCACATCCAAGAGGAGCCCGACACACAT
GCTCGTTGTTTGTTCGCTCTTCCGATGAGCCGTCGGGTCTCGTCAACGAA
AACATGCAATCTCCAAGTCTCACATCACCGCACTTTACAGAAGACACATC
AAAGCAGGAGACGATGGTTGATAGACTGGAGTTTGCAAAGCTTAAGTTTG
TCACACGACAACTCTGTTGATGCCTGCTGTGCACCCTACGCATGTACGCA
TGCAGACCTCTTTCGCGCGGAGCAGCAGCGGTGTAATCGTTCATGTCATG
GACACGGAGCGGCACAACCTTGTTTTCCCGTTCACTGCGTGTACAACGTA
ATACTCGCCAAACGGTTTCTGCAACTGCTGTTTATTGGACAGCTTTTCGT
TTTGTTTTTACAGAGCAGCAGCCGCAGTGGTGTACAATACCGCAAGAGGC
GGGGAGATAGCACCCCCCCTAGACCGACTTTCCGAGGTGGATTCGATTGC
TCCACAGCCAAGGGGGGGGTTGCGAAGAGAGCCCGACACGTCTACGTCTG
TCTGCAGCAAGCCCTCGACGAGATGTTGTTCCAAAACCACCACCATCTTG
GTTGTTGGCACAATCAATCTTGGCTGGCTGAGGAGCAGGCAAGCTTTGAA
CATTGGTCTCTACGGTAGTGTATATATATGCTGTAGGAAGGCGAAATAAA
TGCACATGAGGTGTGTAGAGACTCTGTAGCAGTGAGGCAAAAAAATAAAA
AGGTGTACTAAACTGTACTGTGAAGAAGGTGTTTTTAGGAAAAATCTACA
GCAGCAGCAGCAGTGGATTTACTTCAAACTGGGAAAGGCCTAGATACTAT
CCGGAGGGAGATTGGTATGGACGCATGGACTCAATCCCTCACCGTCCCCA
ACAGAGAACACGCGAGCGACAGGAAACTATAGGACAGAAAGATAAAAAGC
AAAGCGTGTTGTAGAGAAAAGTAGTCACGATTGTTAGCAACGTAAGAGTT
TCTTTTGACCGTGGCACGGATGCCCACGAGGACTAAAGGACGGCGACAAT
AGACGGACCGAATCAACGGCCAATTGAGAGAGACAGAGACAGACAGACAG
ACAGACAGGCAGGCAGACAGAGGGAGAGAGAAAAACAGAGAAGAGATGCA
GGCCTCGGCCATGGCGGGCCAAGATGGAGAAGAAGTAAACAAAATATTCA
GCAACCAACTTGCACCCCAGAACCCAGTCAGAATTTGTCTGATTTTTTCC
TAGAATATACTCCACCGAAACCATCCCGACCGCAATGAATCTCCGAATAG
ATATGCTCACTATTCACCCATCGTATCTGTTGTCCTGCGAGTATGAATAT
TCCAACCGATATTTCCGGGTCCTCCAATGCTCCCCGATCTGTCGCAATTT
TACCCTCTCTTGGCTAGTTGTGTGCGACCACGCAGCGGGCGTCGTCAGTC
AGTTGGACTAGTGTACTGGTGGTAGGAGGTTTTGAGCATAGATTGATGGG
TCGAAACGGTTTTTAATTTGGACACAAACAAGACAACATCGCCTTTCGAA
AAATGAAATATTTCAATATTTTGCCCCCCGCGCTGCCTCGCTGGTCATGA
CGATTCCAGCAACTGCTTGTCCGGAAAACCCCTCTCTCAAACGATTCATA
TTTCAAAGCATTGTAAGTGTATGTAGTTACAGCAGTCTGTTCGTTTTTTG
TCTCATATCGCTTTAAATCATCAAGGCTGGGACCCTGGAGTTTGTGTCCT
GTACACAAGCAGCGTGGTGTACCTGTTTCGCACTTGACTGCGCCGAACTC
AAGAGGGACGCGTTCTGACCAAGTAGAACCACAAGAGCACATCGAAGCAC
GCGGTTACCATTAGAACCTTTTACCGTTGTCCTCATCCTCCCTTCTTGTC
ATCCCTACGGGGTCATGTCTAAAAGTATGTGTGTGCGTTTGTGAGCCACG
CAGCTTGCCGTCCCTCGCTGTTTATCTTGACGTCGCTCGATGCTTCTGCC
ACACGCTCCACGTAAACTAAAATCTACCCGTGACCACCGCTGCTGCTGCT
GCCGCGTAGACTCCGCCCAGGCGCAGGCCAGGCAGCACAAACAAAGCAGA
GAGCATCCACTCGAGAGAATCGAGAACGGCCCTGTAGGGTGGTGGGGGGG
GGAGGTACACGGCAAGCGAGGGTCGTGAGTTGGGGATCAAGCCATGAGCG
GTACCGAGCGCTCAAGTTCCGGCGATGACGGGGCGCGAGGCGCGAGCCAG
CAAAGCGACGAGCGGTCACGCGAAGCCAACCGCATACACTGCAAGGAAAC
CCGGGACCGTCGGCGGGAGAGGGAACGCGCCCTCTGTGAGGTTCGTGGCA
GCCGGGGTAGCTAGCCGCATGTAAAGCGTGCGTCGGCGAAAAATCGTTCT
TCGTGCTCGTGGGGCAGGGCGCTTCGAATAGTTGAACGGAGCCTTCCACC
GAAATCTGGGTCGGCTTGACGGGGCGGGGAGGGTACTCATAGGCGTGCAT
GCCATAGTCGTTAGACCATTCGGGGGGGGGGGGGGCGTAACTGTTGTTTT
GCTGTTTGCACGTAGTCGCATGAGTGCCCCTTGACGAGGCATCTGTCTCG
AAACGGAGCACCGTTCCCAGCACCGTTCCTTATGCTCTTTGTGGAGGGGA
CTCCAGGATTTCGGTGCTCTATGCACACATGTGTACGCCGTTGCCAGGTT
TTTCAGAGTATCTATCCTCTCTTATCATCATTCCCCTCCTGATGGCCCTT
TGTTGTGGTCGAAGGAGGCGGGGGGGTCGATATCTCAATTCACAAACGAA
CGACAATGCTACCATGCAATGTGTACTAAATACAGTGCTGATGGGCACTT
TTTTTTAGAAACGCCGTCGTTGCCGCTACAGTGTCAACCAGAGCGGGCAC
TCACCAGCATAACGTAGGCCTAGCGACCACACGCACGCGCTTAGCTTTAA
CCTACTGACACCGACGCAATGCCATTGGTCAGCTGGTGAGCGCGGTCAAT
GCTAATCAAACAAGCACACACAACCCACAATTTCTACCCGCTGTTAAGAG
ACTGACGTCTTTTCATTGATCAGCTGGTTAACGCGGCCTAGGCTAGTCAA
AAGAGAAGCATGCACTCAACACACGCCGTGCCCAATGCGAGCTAATGTAC
CTACCTCATTTCATAGTGCGACGACTGACCTGTGTGTGGGGGGGGGGCTC
CTTGGTTCGGTACTTTTACCTGTCGTCCATGTCAACCAATCAGCATGTGG
AACTCCTGAAGCTGTGCCAGTCGATCGTGGAACACGGCCCGGACTTGTTC
TCGCTGCACAACGCTACGATCGATGCTCCGTTCAGGTACGGGGAGAGAAT
AAAGGGAGAGGGTGGGGGGGGGAGGGCCGGGGGGAGAAAGAGAGAAAGAG
AGGGTAACGGTGGGGATAGACCGTGAAGTAGAAACGGCGAAGGTTGTTCT
ATCGTTCTCAGGGATAACGCTGCTCTTTCGTCCCTAGCACCTACAAAATG
CAATAGGAAGAGCAGCTCCTCAACCGTCGCGCCGTCCCTCCCTCCCTTCC
TCCCTCCCTCGCCGGATATGGGATCAACACCGCTATCGACAACGACGGTG
CGACCGTACAGCTACCTCTGCGATAACTTCAACAGGCGGCTGCAGATGCC
GCCGGAGACAATGGTCGGCAGGTCCCTGTTGAGGTGCGGAGAAAGGGCAA
GTAGGATACGTACTCTTGAGGAGGGATGCGGGCAGACTAGTTTAGCATGA
TTCTGTCTTTTCCTCCCTCACTGCCGCTACGGCGGTGGGTCGCATAAGAT
GCCGCACCCCGTGGACCGATTTTCAAAGCTCGCTTGCTCCATGACCAAGA
GGATGCCGAAATCAAATGATATGTTTTCGGAACCTCTCGACGAGACCGTT
CCAACTGCTCCGTTTTCGGCGCCAACACTGCTATTCCTGCCGAGTAATCG
AGCTTTGAAAAGCGGTCCAGGGGGTGTGGTATCTTGTGTAATGTCAGCTA
CGGTAATACTCCGTGCGATGGCGTTGCTAGTGTGGGCCACGCAGCAGCAT
CCGTTAGCGGGCATCATCCCGATGCGACGGCGCCCCGCCCAAGAGAGTCA
CGCCTAGTAAGAGCAGAGCTTGGTAGAAACGACCGACCGTTCCGGCCCTC
GCCGTGAACAGCGTGTACACACCAACCTGCTCAAAACGACCGCGTGGAGA
CAACCTGGCTGGTGAAAAGGTTGTCTTTTCGACGTGGCATGTCGCTCCCT
CAAGCCGATTCGGCTGCGCTGGATTAAACCTCTGCCGTTAGCAGCGTCCC
ATGACTCCTCTCTTGAGATAAACCGAGTTTACTTGGTCATTACACATTGC
GCCGGGTTCTCTGTTCCGAGCAGTACGCTTGTGTTCGACGGTGGGCGCTT
GTGTTGGTGCATCAAGGCATGCCTCTAATGCGGTGAACGTTATTGATGAG
CTGGTTAAAATTGATGATACAAGCAGCGTGTTGGTGCTGCTGTGAGAGCG
AATTCGGTTCTTCTCCCTGCCTCTTTCTCACTCCCCCCCCGTCACTGTGC
ATATCGTGAGCTTCGTCGTGCATCGTCCCCCCCCCNNNNNNNNNNCCCGC
CTCTTTCTCCCCCCCCCCCCGCCCCTGTGCATATCGTGAGCTTCGTCGTG
CATCGCCCCCCCCCCCCCTTGCCATCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCCACCGTTCAATCTCCTCCACGTCATGTGTGGTGCTCTCTCTG
CCAAAACAACTTCTTTCTCTGCCCCTCACGTCTCTCCTTACACCTCCCCT
ATCCAATGTTCTCCGTTTTCTTCTCTTTCTCTCGCCTGCTGCCGTCTGTC
TGTCTGCAAACCCTTCCCTCATTGGGCCGGCCAACCAACCGCGTCGCGGA
ACCTCCCCTCCCTCCCTCCCGTCAGCATCGTGGACGAGAGAGACGCGCTC
TCTCTCCGGAACGCTATTTTCCAGGTGCTCAACGAGGCCCAACACCACCA
CGCGGGCGGCGGAAGCGACCCCCCCGGGGGTGCTGTCGTCCATGTCCGCA
TCGCGCACGGACAGATTTTTTGCGAGGCGAGCATGTCGATCGCGTGCGGC
TCGCACGGCCTGGTAGTCGTCACTCGCTTGTACAGCAGCGGCTCGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1448:26214..31961- >mRNA_E-siliculosus-1a_F_contig1448.2617.1 ID=mRNA_E-siliculosus-1a_F_contig1448.2617.1|Name=mRNA_E-siliculosus-1a_F_contig1448.2617.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1068bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1448:26214..31961- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCGGTACCGAGCGCTCAAGTTCCGGCGATGACGGGGCGCGAGGCGC
GAGCCAGCAAAGCGACGAGCGGTCACGCGAAGCCAACCGCATACACTGCA
AGGAAACCCGGGACCGTCGGCGGGAGAGGGAACGCGCCCTCTGTGAGATG
AGCGGTACCGAGCGCTCAAGTTCCGGCGATGACGGGGCGCGAGGCGCGAG
CCAGCAAAGCGACGAGCGGTCACGCGAAGCCAACCGCATACACTGCAAGG
AAACCCGGGACCGTCGGCGGGAGAGGGAACGCGCCCTCTGTGAGCATGTG
GAACTCCTGAAGCTGTGCCAGTCGATCGTGGAACACGGCCCGGACTTGTT
CTCGCTGCACAACGCTACGATCGATGCTCCGTTCAGCATGTGGAACTCCT
GAAGCTGTGCCAGTCGATCGTGGAACACGGCCCGGACTTGTTCTCGCTGC
ACAACGCTACGATCGATGCTCCGTTCAGCTACCTCTGCGATAACTTCAAC
AGGCGGCTGCAGATGCCGCCGGAGACAATGGTCGGCAGGTCCCTGTTGAG
CTACCTCTGCGATAACTTCAACAGGCGGCTGCAGATGCCGCCGGAGACAA
TGGTCGGCAGGTCCCTGTTGAGCATCGTGGACGAGAGAGACGCGCTCTCT
CTCCGGAACGCTATTTTCCAGGTGCTCAACGAGGCCCAACACCACCACGC
GGGCGGCGGAAGCGACCCCCCCGGGGGTGCTGTCGTCCATGTCCGCATCG
CGCACGGACAGATTTTTTGCGAGGCGAGCATGTCGATCGCGTGCGGCTCG
CACGGCCTGGTAGTCGTCACTCGCTTGTACAGCAGCGGCTCGTGACATCG
TGGACGAGAGAGACGCGCTCTCTCTCCGGAACGCTATTTTCCAGGTGCTC
AACGAGGCCCAACACCACCACGCGGGCGGCGGAAGCGACCCCCCCGGGGG
TGCTGTCGTCCATGTCCGCATCGCGCACGGACAGATTTTTTGCGAGGCGA
GCATGTCGATCGCGTGCGGCTCGCACGGCCTGGTAGTCGTCACTCGCTTG
TACAGCAGCGGCTCGTGA back to top
|