mRNA_E-siliculosus-1a_F_contig14445.2599.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14445.2599.1
Unique NamemRNA_E-siliculosus-1a_F_contig14445.2599.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: D8LMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD5_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.870e-39
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE
Sbjct:  139 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 206
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: A0A6H5L225_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L225_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.010e-38
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQ+RGVGPDSLLPNE
Sbjct:  149 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQSRGVGPDSLLPNE 216
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: A0A836CNQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNQ4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.820e-20
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LD+LS +AP+HLKCP+C  I+ DAV++PCC  S CDSCVR AL A+ SM CPLC   GV PD L+PN 
Sbjct:  331 LDQLSAAAPEHLKCPLCRNIVQDAVLVPCCQGSACDSCVRDALAAN-SMQCPLCSRPGVTPDQLIPNR 397
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: A0A8K1C5H0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5H0_PYTOL)

HSP 1 Score: 80.5 bits (197), Expect = 4.450e-16
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LD+L  + P HL CP+C ++M+DAV++PCC +S CD C+R AL    +++CPLC T  + P+ LLPN+
Sbjct:  334 LDQLISNPPDHLACPLCKRLMNDAVLIPCCQESACDECLRSAL-IDHNLTCPLCNTPNMSPEKLLPNK 400
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: A0A484DZX4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZX4_BRELC)

HSP 1 Score: 79.3 bits (194), Expect = 1.130e-15
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LD+   + P+HL CP+C ++MSDAV++PCC +S CD C+R AL     ++CPLC    + P+ LLPN+
Sbjct:  340 LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IDRKLTCPLCSVNNMSPEKLLPNK 406
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: A0A2D4BX16_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX16_PYTIN)

HSP 1 Score: 78.6 bits (192), Expect = 1.470e-15
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LDRL  + P HL CP+C ++M+DAV++PCC +S C+ C+R AL     ++CPLC    + P+ LLPN+
Sbjct:  198 LDRLISNPPDHLACPLCKRLMNDAVLIPCCQESACEECLRSAL-IDRKLTCPLCSAPNMSPEKLLPNK 264
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: A0A2P4Y5F3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y5F3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.500e-15
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LD+   + P+HL CP+C ++MSDAV++PCC +S CD C+R AL     ++CPLC    + P+ LLPN+
Sbjct:  339 LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVSNMSPEKLLPNK 405
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: K3X144_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X144_GLOUD)

HSP 1 Score: 79.0 bits (193), Expect = 1.520e-15
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LD+   + P HL CP+C ++M+DAV++PCC +S CD C+R AL     ++CPLC T  + P+ LLPN+
Sbjct:  336 LDQFIANPPDHLACPLCKRLMNDAVLIPCCQESACDECLRSAL-IEKKLTCPLCNTTNMSPEKLLPNK 402
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: D0NE99_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0NE99_PHYIT)

HSP 1 Score: 79.0 bits (193), Expect = 1.530e-15
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LD+   + P+HL CP+C ++MSDAV++PCC +S CD C+R AL     ++CPLC    + P+ LLPN+
Sbjct:  332 LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVSNMSPEKLLPNK 398
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BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Match: A0A3R7NI29_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NI29_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.530e-15
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPNE 204
            LD+   + P+HL CP+C ++MSDAV++PCC +S CD C+R AL     ++CPLC    + P+ LLPN+
Sbjct:  342 LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVTNMSPEKLLPNK 408
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14445.2599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMD5_ECTSI1.870e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L225_9PHAE1.010e-3898.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CNQ4_9STRA9.820e-2061.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1C5H0_PYTOL4.450e-1648.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484DZX4_BRELC1.130e-1547.06Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2D4BX16_PYTIN1.470e-1547.06Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2P4Y5F3_9STRA1.500e-1547.06Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
K3X144_GLOUD1.520e-1547.06Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NE99_PHYIT1.530e-1547.06Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3R7NI29_9STRA1.530e-1547.06Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14445contigE-siliculosus-1a_F_contig14445:767..973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size207
Model size207
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.3.2.27
Ec32 orthologEc-05_002370.1
Ec32 ortholog descriptionDWNN domain
EggNOG OGsCOG5222@1,KOG0314@2759
EggNOG free text desc.zinc ion binding
KEGG Pathwayko03015,map03015
KEGG koko:K10624,ko:K15541
Seed eggNOG ortholog2880.D8LMD5
Seed ortholog evalue5.6e-32
Seed ortholog score142.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927954.9636834-CDS-E-siliculosus-1a_F_contig14445:766..9731622927954.9636834-CDS-E-siliculosus-1a_F_contig14445:766..973Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14445 767..973 -
1696318752.0187337-CDS-E-siliculosus-1a_F_contig14445:766..9731696318752.0187337-CDS-E-siliculosus-1a_F_contig14445:766..973Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14445 767..973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14445.2599.1prot_E-siliculosus-1a_F_contig14445.2599.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14445 767..973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14445.2599.1

>prot_E-siliculosus-1a_F_contig14445.2599.1 ID=prot_E-siliculosus-1a_F_contig14445.2599.1|Name=mRNA_E-siliculosus-1a_F_contig14445.2599.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMS
CPLCQTRGVGPDSLLPNE*
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mRNA from alignment at E-siliculosus-1a_F_contig14445:767..973-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14445.2599.1 ID=mRNA_E-siliculosus-1a_F_contig14445.2599.1|Name=mRNA_E-siliculosus-1a_F_contig14445.2599.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=207bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14445:767..973- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCGACCGCCTGTCGGAGTCTGCCCCAAAGCACCTCAAGTGCCCGATCTG
CAGCAAGATCATGTCCGACGCGGTCATCTTGCCGTGCTGCGCCAAGAGCA
CGTGCGACTCGTGCGTCCGGAGGGCCCTCAACGCCTCGGCCTCGATGTCG
TGCCCGCTCTGCCAGACCCGGGGGGTCGGGCCCGACAGCCTGCTGCCGAA
CGAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14445:767..973-

>mRNA_E-siliculosus-1a_F_contig14445.2599.1 ID=mRNA_E-siliculosus-1a_F_contig14445.2599.1|Name=mRNA_E-siliculosus-1a_F_contig14445.2599.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14445:767..973- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCGACCGCCTGTCGGAGTCTGCCCCAAAGCACCTCAAGTGCCCGATCTG
CAGCAAGATCATGTCCGACGCGGTCATCTTGCCGTGCTGCGCCAAGAGCA
CGTGCGACTCGTGCGTCCGGAGGGCCCTCAACGCCTCGGCCTCGATGTCG
TGCCCGCTCTGCCAGACCCGGGGGGTCGGGCCCGACAGCCTGCTGCCGAA
CGAGTGACTCGACCGCCTGTCGGAGTCTGCCCCAAAGCACCTCAAGTGCC
CGATCTGCAGCAAGATCATGTCCGACGCGGTCATCTTGCCGTGCTGCGCC
AAGAGCACGTGCGACTCGTGCGTCCGGAGGGCCCTCAACGCCTCGGCCTC
GATGTCGTGCCCGCTCTGCCAGACCCGGGGGGTCGGGCCCGACAGCCTGC
TGCCGAACGAGTGA
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