mRNA_E-siliculosus-1a_F_contig1444.2597.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1444.2597.1
Unique NamemRNA_E-siliculosus-1a_F_contig1444.2597.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1444.2597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1444contigE-siliculosus-1a_F_contig1444:13648..13876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size144
Model size144
Exons2
Ec32 orthologEc-16_005000.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927954.8159745-CDS-E-siliculosus-1a_F_contig1444:13647..137611622927954.8159745-CDS-E-siliculosus-1a_F_contig1444:13647..13761Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1444 13648..13761 +
1696318751.9596262-CDS-E-siliculosus-1a_F_contig1444:13647..137611696318751.9596262-CDS-E-siliculosus-1a_F_contig1444:13647..13761Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1444 13648..13761 +
1622927954.8341124-CDS-E-siliculosus-1a_F_contig1444:13846..138761622927954.8341124-CDS-E-siliculosus-1a_F_contig1444:13846..13876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1444 13847..13876 +
1696318751.9690218-CDS-E-siliculosus-1a_F_contig1444:13846..138761696318751.9690218-CDS-E-siliculosus-1a_F_contig1444:13846..13876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1444 13847..13876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1444.2597.1prot_E-siliculosus-1a_F_contig1444.2597.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1444 13648..13876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1444.2597.1

>prot_E-siliculosus-1a_F_contig1444.2597.1 ID=prot_E-siliculosus-1a_F_contig1444.2597.1|Name=mRNA_E-siliculosus-1a_F_contig1444.2597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp
LCRSLDSLVDPNYEWKLASRDNKRVDILHRNYFFITFQHAYGNKSFK*
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mRNA from alignment at E-siliculosus-1a_F_contig1444:13648..13876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1444.2597.1 ID=mRNA_E-siliculosus-1a_F_contig1444.2597.1|Name=mRNA_E-siliculosus-1a_F_contig1444.2597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=229bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1444:13648..13876+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTGCCGAAGTTTGGACTCATTGGTCGATCCCAATTATGAATGGAAACT
CGCTTCACGGGACAACAAGCGGGTAGATATATTGCATAGAAACTACTTCT
TTATCACATTTCAGGTCAGGCAATACTAATCCCACAATAACACTCAAGAT
AATCTCCGAAGGGAACACGCGGCGTTGTCTCGATTTGCATCACTTCTAGC
ATGCGTACGGCAATAAATCCTTCAAGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1444:13648..13876+

>mRNA_E-siliculosus-1a_F_contig1444.2597.1 ID=mRNA_E-siliculosus-1a_F_contig1444.2597.1|Name=mRNA_E-siliculosus-1a_F_contig1444.2597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1444:13648..13876+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTGCCGAAGTTTGGACTCATTGGTCGATCCCAATTATGAATGGAAACT
CGCTTCACGGGACAACAAGCGGGTAGATATATTGCATAGAAACTACTTCT
TTATCACATTTCAGTTGTGCCGAAGTTTGGACTCATTGGTCGATCCCAAT
TATGAATGGAAACTCGCTTCACGGGACAACAAGCGGGTAGATATATTGCA
TAGAAACTACTTCTTTATCACATTTCAGCATGCGTACGGCAATAAATCCT
TCAAGTAGCATGCGTACGGCAATAAATCCTTCAAGTAG
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