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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10307.259.1 vs. uniprot
Match: A0A6H5KG52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG52_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.490e-23 Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 Query: 10 RDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHISAEFE 159
RDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNE D LHISAEFE
Sbjct: 317 RDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNETDSLHISAEFE 366
BLAST of mRNA_E-siliculosus-1a_F_contig10307.259.1 vs. uniprot
Match: D8LM66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM66_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 4.610e-20 Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 Query: 31 KRTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHISAEFE 159
+RTSSGGDVWVCVDRLCGMSRELVVVCPA+NEADPLHISAEFE
Sbjct: 149 ERTSSGGDVWVCVDRLCGMSRELVVVCPATNEADPLHISAEFE 191
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 159 |
| Model size | 159 |
| Exons | 1 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Ec32 ortholog | Ec-18_002650.1 |
| Ec32 ortholog description | hypothetical protein |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927535.3027465-CDS-E-siliculosus-1a_F_contig10307:510..669 | 1622927535.3027465-CDS-E-siliculosus-1a_F_contig10307:510..669 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10307 511..669 + |
| 1696318572.9747233-CDS-E-siliculosus-1a_F_contig10307:510..669 | 1696318572.9747233-CDS-E-siliculosus-1a_F_contig10307:510..669 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10307 511..669 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10307.259.1 >prot_E-siliculosus-1a_F_contig10307.259.1 ID=prot_E-siliculosus-1a_F_contig10307.259.1|Name=mRNA_E-siliculosus-1a_F_contig10307.259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
MCNRDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHISA
EFE back to topmRNA from alignment at E-siliculosus-1a_F_contig10307:511..669+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10307.259.1 ID=mRNA_E-siliculosus-1a_F_contig10307.259.1|Name=mRNA_E-siliculosus-1a_F_contig10307.259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=159bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10307:511..669+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGCAACAGAGACATCCTGCTCTCCACCAAGCGCACGTCGAGCGGCGG
GGACGTCTGGGTCTGCGTCGACCGCCTCTGCGGGATGAGCCGCGAGCTGG
TGGTCGTCTGCCCGGCGTCCAACGAGGCCGACCCCCTCCACATCTCCGCG
GAGTTCGAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10307:511..669+ >mRNA_E-siliculosus-1a_F_contig10307.259.1 ID=mRNA_E-siliculosus-1a_F_contig10307.259.1|Name=mRNA_E-siliculosus-1a_F_contig10307.259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10307:511..669+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGCAACAGAGACATCCTGCTCTCCACCAAGCGCACGTCGAGCGGCGG
GGACGTCTGGGTCTGCGTCGACCGCCTCTGCGGGATGAGCCGCGAGCTGG
TGGTCGTCTGCCCGGCGTCCAACGAGGCCGACCCCCTCCACATCTCCGCG
GAGTTCGAGATGTGCAACAGAGACATCCTGCTCTCCACCAAGCGCACGTC
GAGCGGCGGGGACGTCTGGGTCTGCGTCGACCGCCTCTGCGGGATGAGCC
GCGAGCTGGTGGTCGTCTGCCCGGCGTCCAACGAGGCCGACCCCCTCCAC
ATCTCCGCGGAGTTCGAG back to top
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