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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10306.258.1 vs. uniprot
Match: A0A6H5K0F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F2_9PHAE) HSP 1 Score: 162 bits (411), Expect = 2.960e-49 Identity = 95/108 (87.96%), Postives = 95/108 (87.96%), Query Frame = 2 Query: 2 VGAGGAGGAGNQWRGQDILTKLASLQGMVDSLTGFAGEEAALTATGGG---DQDLHSNASNISIAHRPSQSTPFGRHXXXXXXXXQGQPPLPPICPILISQNGFFASE 316
VGAGGAGGAGNQWR QDILTKLA LQGMVDSLTGFAGEEA LTA DQDLH NASNIS AHRPSQSTPFGRHXXXXXXXXQGQP LPPICPILISQNGFFASE
Sbjct: 18 VGAGGAGGAGNQWRDQDILTKLAGLQGMVDSLTGFAGEEATLTAAXXXXXXDQDLHYNASNISAAHRPSQSTPFGRHXXXXXXXXQGQPRLPPICPILISQNGFFASE 125
BLAST of mRNA_E-siliculosus-1a_F_contig10306.258.1 vs. uniprot
Match: D7FZ80_ECTSI (Putative Mn/Fe superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ80_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 3.770e-9 Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 2 Query: 2 VGAGGAGGAGNQWRGQDILTKLASLQGMVDSLTGFA 109
VGAG GAGNQWRGQDILTKLASLQGMVDSL GFA
Sbjct: 334 VGAGXXXGAGNQWRGQDILTKLASLQGMVDSLAGFA 369
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 318 |
| Model size | 319 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10306.258.1 >prot_E-siliculosus-1a_F_contig10306.258.1 ID=prot_E-siliculosus-1a_F_contig10306.258.1|Name=mRNA_E-siliculosus-1a_F_contig10306.258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
GRCRGGGRRGKPVARPGHPDQAGQPAGHGRLPHGLCRRRSGTNGHRRRRP
RPPLQREQHLDRTPTVTIYTFWKTSPSSSSAGAGTAPSSSHLPDPDISER
VLRIGD back to topmRNA from alignment at E-siliculosus-1a_F_contig10306:912..2046+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10306.258.1 ID=mRNA_E-siliculosus-1a_F_contig10306.258.1|Name=mRNA_E-siliculosus-1a_F_contig10306.258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1135bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10306:912..2046+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTCGGTGCCGGGGGGGCGGGAGGCGCGGGAAACCAGTGGCGAGGCCAGG
ACATCCTGACCAAGCTGGCCAGCCTGCAGGGCATGGTCGACTCCCTCACG
GGCTTTGCCGGTGGGTAACGCCTAACCCTAGCGCCTTGCAACCGTCTCGG
TGTCTTTGGTGGTCTTTTATCGGCCTAACGCCGACGGCTGCTTGCTGCAG
GGTTCGAAGTCTTGCAACTGCTGCTACTGCTGCTACTACTGCTGCTGCTG
CTGCTGCTAGCAGTGTATCGTGGAGTGTCCGGCTGTAAGCACCGGCCATG
CGGACGAACCATGCAAATACATGGTAGGAGATAACACCCTCACCTCGCGT
GTCAGCGGGTTCGTTGTGTAGCTAGCGCGCTGAGGTTTTTCCGAAACGTT
TACCATGCTGCAGGATATGTGCGATTTGATGGGGCGTACCGTAGGGGACA
AGAGAACCTCTTTGCTCTTCCCACCCCTCGTCTCCTCTGTTTACCCATGG
GACCCTTTTTTTATTGCTTGATTAAGGTAAGGAGTCTTACTGAAAGACTT
GCGTGAAGCGAAGCAAGTGCTGAACGCCAATCGGATGCGCTCCTGGGGTG
CAGGACTCTCCTGATGACACCGGTAGTTTCATATCGCGCGTTTTTTTAAC
CGGTCCATAGGGACGGGCGAGGTCAATCTCACGGTGAATCTCACGGTGAA
TCTCACGGTAAATCTCTCGTCCCCGCACAGGTTCAGCTACCCCCCCCCCC
CCCAATAGTCTCTCTAGCAAGCAAGGCATGCAAAACATGAGTGCGCCTCC
CTCCATACTTCAACAACAGCACGGATTTTCATTGCTATCTCATCCTTCGG
CCTCTTTTTCTTTGGTCTGTGGATAAGCATGTTTTTTTCTTTTTAATAAG
CCAATCGAACACACCCACGCATGCAGGCGAAGAAGCGGCACTAACGGCCA
CCGGCGGCGGCGACCAAGACCTCCACTCCAACGCGAGCAACATCTCGATC
GCACACCGACCGTCACAATCTACACCTTTTGGAAGACATCACCATCATCA
TCATCAGCAGGAGCAGGGACAGCCCCCTCTTCCTCCCATCTGCCCGATCC
TGATATCTCAGAACGGGTTCTTCGCATCGGAGATC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10306:912..2046+ >mRNA_E-siliculosus-1a_F_contig10306.258.1 ID=mRNA_E-siliculosus-1a_F_contig10306.258.1|Name=mRNA_E-siliculosus-1a_F_contig10306.258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10306:912..2046+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTCGGTGCCGGGGGGGCGGGAGGCGCGGGAAACCAGTGGCGAGGCCAGG
ACATCCTGACCAAGCTGGCCAGCCTGCAGGGCATGGTCGACTCCCTCACG
GGCTTTGCCGGGTCGGTGCCGGGGGGGCGGGAGGCGCGGGAAACCAGTGG
CGAGGCCAGGACATCCTGACCAAGCTGGCCAGCCTGCAGGGCATGGTCGA
CTCCCTCACGGGCTTTGCCGGCGAAGAAGCGGCACTAACGGCCACCGGCG
GCGGCGACCAAGACCTCCACTCCAACGCGAGCAACATCTCGATCGCACAC
CGACCGTCACAATCTACACCTTTTGGAAGACATCACCATCATCATCATCA
GCAGGAGCAGGGACAGCCCCCTCTTCCTCCCATCTGCCCGATCCTGATAT
CTCAGAACGGGTTCTTCGCATCGGAGATGCGAAGAAGCGGCACTAACGGC
CACCGGCGGCGGCGACCAAGACCTCCACTCCAACGCGAGCAACATCTCGA
TCGCACACCGACCGTCACAATCTACACCTTTTGGAAGACATCACCATCAT
CATCATCAGCAGGAGCAGGGACAGCCCCCTCTTCCTCCCATCTGCCCGAT
CCTGATATCTCAGAACGGGTTCTTCGCATCGGAGAT back to top
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