mRNA_E-siliculosus-1a_F_contig1030.257.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: D8LR20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR20_ECTSI) HSP 1 Score: 439 bits (1130), Expect = 1.210e-136 Identity = 325/449 (72.38%), Postives = 325/449 (72.38%), Query Frame = 1 Query: 316 MADSGLERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEGEEGVGTXXXXXXXXXXXXRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWERERAASIDKRKVQRFSPEELLALRRAPTRPLGKMPVLMGDISIIVSEEPLEPVTATPADQEAISRIWAAAAERQPMRGRRSRWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRSHVHRRESEDDLWDDVGGGXXXXHGADXXXXXXXXXXMDLLSMAQKADKFQEQMDSMKRRMEGVELHEQKEEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPTSVXXXXXXXXXXXXNAERSLAQQGGAGTFEGGSRIGSQGNMGAMDPG 1662
MADSG ERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEGEEGVGTXXXXXXXXXXXXRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWERERAASIDKRKVQRFSPEELLALRRAPTRPLGKMPVL GDISIIVSEEPLEPVTATPADQEAISRIWAAAAERQPMRGRRSRWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXH AD MDLLSMAQKADKFQEQMDSMKRRMEGVELHEQKEE GGAGTFEGGSRIGSQGNMGAM PG
Sbjct: 1 MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEGEEGVGTXXXXXXXXXXXXRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWERERAASIDKRKVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRIWAAAAERQPMRGRRSRWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAADGSGGLHGVEGMDLLSMAQKADKFQEQMDSMKRRMEGVELHEQKEE-----------------------------------------------------------------------------------------GGAGTFEGGSRIGSQGNMGAMGPG 360
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: A0A6H5KUY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY1_9PHAE) HSP 1 Score: 334 bits (857), Expect = 3.320e-101 Identity = 195/252 (77.38%), Postives = 198/252 (78.57%), Query Frame = 1 Query: 316 MADSGLERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEG---------------------------------------EEGVGTXXXXXXXXXXXXRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWERERAASIDKRKVQRFSPEELLALRRAPTRPLGKMPVLMGDISIIVSEEPLEPVTATPADQEAISRI 954
MADSG ERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGH+EG EEGVGT R STLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRW+RERAASIDKRKVQRFSPEELLALRRAPTRPLGKMPVL GDISIIVSEEPLEPVTATPADQEAISR+
Sbjct: 1 MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHLEGVGHRTTLGEDWRVLGIGVSLNCWGVFRDKGLLLFAARDQEEGVGTGVPSPGTGAGGGRASTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWDRERAASIDKRKVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRV 252
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: A0A6H5L9W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W7_9PHAE) HSP 1 Score: 204 bits (519), Expect = 3.040e-51 Identity = 321/396 (81.06%), Postives = 323/396 (81.57%), Query Frame = 1 Query: 3463 VAEEANQGSGSRRGSSANILDAWGSPQVEGVAATNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAWGGATKQPEAKKGLMEIQAREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-----------------------ASRAPAADPTRPPSPLVGPTGEPLEKPAAEKPQPVPLVAAASAIPAGLNQKARKAYEKKLKQEAAKXXXXXXXXXXXXXXAWGSNAVATGPKKSLAEIQAEEGKRQAQKAALHTPAQAQALAEEHR 4581
V EEANQGSG RRGSSANILDAWGSPQVEGVAATN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WGGATKQPEAKKGLMEIQAR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SRAPAADPTRPPSPLVGPTGEPLEKPAAEKPQPVPLVAAASAIPAGLNQKARKAYEKKLKQEAAKXXXXXXXXXXXXXXAWGSNAVAT PKKSLAEIQAEEGKRQAQ+AALHTPAQAQ+LAEEHR
Sbjct: 26 VVEEANQGSGPRRGSSANILDAWGSPQVEGVAATNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------WGGATKQPEAKKGLMEIQARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRAPAADPTRPPSPLVGPTGEPLEKPAAEKPQPVPLVAAASAIPAGLNQKARKAYEKKLKQEAAKXXXXXXXXXXXXXXAWGSNAVATVPKKSLAEIQAEEGKRQAQEAALHTPAQAQSLAEEHR 379
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: F0YBM2_AURAN (GYF domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBM2_AURAN) HSP 1 Score: 72.0 bits (175), Expect = 8.530e-12 Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 2911 WYYLDPQNRIQGPFDGSEMRQWFEAGYFQRNLPVRRGVTGEFIALERLF 3057
W+Y DPQ + QGPF+ +MRQWF AGYF +LP+R+G +G+F+ L RLF
Sbjct: 5 WFYKDPQGQHQGPFEAPQMRQWFNAGYFDDDLPLRQGESGDFVPLGRLF 53
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: A0A6H5KW39_9PHAE (GYF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW39_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 4.150e-10 Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 Query: 2908 GWYYLDPQNRIQGPFDGSEMRQWFEAGYFQ 2997
GW+YLDPQNRIQGPFDGSEMRQWFEAGYFQ
Sbjct: 177 GWFYLDPQNRIQGPFDGSEMRQWFEAGYFQ 206
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: A0A1Z5JGA9_FISSO (GYF domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGA9_FISSO) HSP 1 Score: 75.9 bits (185), Expect = 6.390e-10 Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1 Query: 2911 WYYLDPQNRIQGPFDGSEMRQWFEAGYFQRNLPVRRGVTGEFIALERLFPGQGATTAFLEASRGG 3105
WYY DPQN IQGPF G EMRQW EAGYF+ +LP+ + TG F AL FP + AF+ + GG
Sbjct: 606 WYYSDPQNNIQGPFRGEEMRQWLEAGYFKSDLPISQNQTGPFKALSIWFPD--ISVAFVYETDGG 668
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: A0A8J2SWM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWM6_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.060e-8 Identity = 27/49 (55.10%), Postives = 39/49 (79.59%), Query Frame = 1 Query: 2911 WYYLDPQNRIQGPFDGSEMRQWFEAGYFQRNLPVRRGVTGEFIALERLF 3057
W+Y DPQ +QGPF+ ++MRQWF+AGYF +LP+R+G G+F +L+ LF
Sbjct: 325 WFYRDPQGAVQGPFEATQMRQWFQAGYFDDDLPLRQGSNGDFHSLKLLF 373
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: A0A7S2W5H4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5H4_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.280e-8 Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 Query: 2908 GWYYLDPQNRIQGPFDGSEMRQWFEAGYFQR--NLPVRRGVTGEFIALERLF 3057
GWYYLDP R+QGPF GS MR+W + G+F R +LP+RRG +G F+ L + F
Sbjct: 496 GWYYLDPHQRVQGPFSGSRMREWHQDGHFDRLPDLPIRRGESGPFVPLSQAF 547
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: A0A448ZNU8_9STRA (GYF domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNU8_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.730e-8 Identity = 36/65 (55.38%), Postives = 41/65 (63.08%), Query Frame = 1 Query: 2911 WYYLDPQNRIQGPFDGSEMRQWFEAGYFQRNLPVRRGVTGEFIALERLFPGQGATTAFL-EASRG 3102
WYY DPQN IQGPF G EMRQW EAGYF+ +LP+ + G F L FP +TAF E S G
Sbjct: 699 WYYSDPQNNIQGPFRGEEMRQWLEAGYFKGDLPISQLPNGPFHQLSNWFPN--LSTAFTAEGSEG 761
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Match: A0A485K828_9STRA (Aste57867_1245 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K828_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.850e-8 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 Query: 2911 WYYLDPQNRIQGPFDGSEMRQWFEAGYFQRNLPVRRGVTGEFIALERLF 3057
W+YLDPQ QGPF SEMR+WFEAGYF+ +LP+R G GEF +L F
Sbjct: 335 WFYLDPQGLQQGPFKSSEMREWFEAGYFKPHLPIRFGNEGEFASLANHF 383 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1030.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1030.257.1 >prot_E-siliculosus-1a_F_contig1030.257.1 ID=prot_E-siliculosus-1a_F_contig1030.257.1|Name=mRNA_E-siliculosus-1a_F_contig1030.257.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1487bp MADSGLERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEGEEGVGTGAPback to top mRNA from alignment at E-siliculosus-1a_F_contig1030:18934..38558+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1030.257.1 ID=mRNA_E-siliculosus-1a_F_contig1030.257.1|Name=mRNA_E-siliculosus-1a_F_contig1030.257.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=19625bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1030:18934..38558+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1030:18934..38558+ >mRNA_E-siliculosus-1a_F_contig1030.257.1 ID=mRNA_E-siliculosus-1a_F_contig1030.257.1|Name=mRNA_E-siliculosus-1a_F_contig1030.257.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=8922bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1030:18934..38558+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |