mRNA_E-siliculosus-1a_F_contig14360.2560.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14360.2560.1
Unique NamemRNA_E-siliculosus-1a_F_contig14360.2560.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14360.2560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14360contigE-siliculosus-1a_F_contig14360:737..1127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size390
Model size392
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927949.2745378-CDS-E-siliculosus-1a_F_contig14360:736..11261622927949.2745378-CDS-E-siliculosus-1a_F_contig14360:736..1126Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14360 737..1126 +
1696318749.7731655-CDS-E-siliculosus-1a_F_contig14360:736..11261696318749.7731655-CDS-E-siliculosus-1a_F_contig14360:736..1126Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14360 737..1126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14360.2560.1prot_E-siliculosus-1a_F_contig14360.2560.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14360 737..1126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14360.2560.1

>prot_E-siliculosus-1a_F_contig14360.2560.1 ID=prot_E-siliculosus-1a_F_contig14360.2560.1|Name=mRNA_E-siliculosus-1a_F_contig14360.2560.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=130bp
GGAGGPDGDLAKVGADTRQCYPKRGHPNKSINNRGRSEGRKPPTTNFRGD
HRSPPIRPAPAGIGRHDTSNSNGSKQQQRQRVRTRQTDAPCFRRCKTGTG
SAHWVMEEQAHRHRLTTFRANADIGNDEAL
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mRNA from alignment at E-siliculosus-1a_F_contig14360:737..1127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14360.2560.1 ID=mRNA_E-siliculosus-1a_F_contig14360.2560.1|Name=mRNA_E-siliculosus-1a_F_contig14360.2560.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=391bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14360:737..1127+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGGGGCAGGTGGGCCGGATGGCGATCTCGCAAAGGTTGGCGCCGACAC
AAGGCAATGCTATCCAAAAAGGGGCCATCCGAATAAAAGCATAAACAACA
GAGGCAGAAGCGAGGGACGAAAGCCGCCAACCACAAACTTCCGAGGCGAT
CATCGCTCACCTCCAATTCGCCCTGCTCCGGCCGGCATCGGCAGACACGA
CACCAGCAACAGCAACGGCAGCAAGCAACAGCAACGGCAGCGTGTGAGGA
CAAGACAGACAGACGCGCCTTGCTTCCGTCGGTGCAAAACAGGCACCGGC
TCGGCGCATTGGGTGATGGAGGAGCAGGCCCACCGGCACCGTCTTACAAC
ATTTCGAGCAAACGCTGACATCGGAAACGATGAGGCCTTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14360:737..1127+

>mRNA_E-siliculosus-1a_F_contig14360.2560.1 ID=mRNA_E-siliculosus-1a_F_contig14360.2560.1|Name=mRNA_E-siliculosus-1a_F_contig14360.2560.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14360:737..1127+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGGGGCAGGTGGGCCGGATGGCGATCTCGCAAAGGTTGGCGCCGACAC
AAGGCAATGCTATCCAAAAAGGGGCCATCCGAATAAAAGCATAAACAACA
GAGGCAGAAGCGAGGGACGAAAGCCGCCAACCACAAACTTCCGAGGCGAT
CATCGCTCACCTCCAATTCGCCCTGCTCCGGCCGGCATCGGCAGACACGA
CACCAGCAACAGCAACGGCAGCAAGCAACAGCAACGGCAGCGTGTGAGGA
CAAGACAGACAGACGCGCCTTGCTTCCGTCGGTGCAAAACAGGCACCGGC
TCGGCGCATTGGGTGATGGAGGAGCAGGCCCACCGGCACCGTCTTACAAC
ATTTCGAGCAAACGCTGACATCGGAAACGATGAGGCCTTGGGAGGGGCAG
GTGGGCCGGATGGCGATCTCGCAAAGGTTGGCGCCGACACAAGGCAATGC
TATCCAAAAAGGGGCCATCCGAATAAAAGCATAAACAACAGAGGCAGAAG
CGAGGGACGAAAGCCGCCAACCACAAACTTCCGAGGCGATCATCGCTCAC
CTCCAATTCGCCCTGCTCCGGCCGGCATCGGCAGACACGACACCAGCAAC
AGCAACGGCAGCAAGCAACAGCAACGGCAGCGTGTGAGGACAAGACAGAC
AGACGCGCCTTGCTTCCGTCGGTGCAAAACAGGCACCGGCTCGGCGCATT
GGGTGATGGAGGAGCAGGCCCACCGGCACCGTCTTACAACATTTCGAGCA
AACGCTGACATCGGAAACGATGAGGCCTTG
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