mRNA_E-siliculosus-1a_F_contig1435.2556.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1435.2556.1
Unique NamemRNA_E-siliculosus-1a_F_contig1435.2556.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2556.1 vs. uniprot
Match: D7G116_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G116_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 6.300e-46
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  554 MDGAYKIGELVNFNGGRVQPQSLEPKHALIFRVEIGGHMVAYVSGETKPARRTRMVKTDLIARNGVFVHVVDKILYAE 787
            MDGAYKIGELVNFNGGRVQPQSLEPKHALIFRVEIGGHMVAYVSGETKPARRTRMVKTDLIARNGVFVHVVDKILYAE
Sbjct:    1 MDGAYKIGELVNFNGGRVQPQSLEPKHALIFRVEIGGHMVAYVSGETKPARRTRMVKTDLIARNGVFVHVVDKILYAE 78
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2556.1 vs. uniprot
Match: A0A8J2X3H5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3H5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.490e-12
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 2 
Query:  398 EVLENAGCRLFLDAMRK-AGRLEGANSITIIAPNDGAF-PSADAFDDSSWGLHIMDGAYKIGELVNFNGGRVQPQSLEPKHALIFRVEIGGHMVAYVSGETKPARRTRMVKTDLIARNGVFVHVVDKILYAE 787
            + LEN  C  F   +R+ A  L G    T++ P D AF    DAF+D  WG+H++DG +K+G++     GRV  + ++ +H +  RV+  G    ++  +  P RR  +++ D+  ++G  +HVVD ILY +
Sbjct:  352 DALEN--CGKFAQLVREQAPDLRGC---TVLVPTDDAFLGDDDAFEDDCWGVHVIDGPWKMGDMAV--AGRVLGRHVDTRHGIRTRVQPDGRYAVWLDTDPSPPRRALVLEMDISCQHGTVLHVVDGILYPD 476
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G116_ECTSI6.300e-46100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2X3H5_9STRA3.490e-1233.33Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1435contigE-siliculosus-1a_F_contig1435:15597..17776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size474
Model size882
Exons4
Ec32 orthologEc-19_002120.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1435.2556.1prot_E-siliculosus-1a_F_contig1435.2556.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1435 15689..17460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.736401-UTR-E-siliculosus-1a_F_contig1435:15596..156881622927948.736401-UTR-E-siliculosus-1a_F_contig1435:15596..15688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 15597..15688 -
1696318749.4690695-UTR-E-siliculosus-1a_F_contig1435:15596..156881696318749.4690695-UTR-E-siliculosus-1a_F_contig1435:15596..15688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 15597..15688 -
1622927948.8108304-UTR-E-siliculosus-1a_F_contig1435:17460..177761622927948.8108304-UTR-E-siliculosus-1a_F_contig1435:17460..17776Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 17461..17776 -
1696318749.510323-UTR-E-siliculosus-1a_F_contig1435:17460..177761696318749.510323-UTR-E-siliculosus-1a_F_contig1435:17460..17776Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 17461..17776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.7509627-CDS-E-siliculosus-1a_F_contig1435:15688..158081622927948.7509627-CDS-E-siliculosus-1a_F_contig1435:15688..15808Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 15689..15808 -
1696318749.4787004-CDS-E-siliculosus-1a_F_contig1435:15688..158081696318749.4787004-CDS-E-siliculosus-1a_F_contig1435:15688..15808Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 15689..15808 -
1622927948.7691503-CDS-E-siliculosus-1a_F_contig1435:16315..164071622927948.7691503-CDS-E-siliculosus-1a_F_contig1435:16315..16407Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 16316..16407 -
1696318749.4864373-CDS-E-siliculosus-1a_F_contig1435:16315..164071696318749.4864373-CDS-E-siliculosus-1a_F_contig1435:16315..16407Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 16316..16407 -
1622927948.7804139-CDS-E-siliculosus-1a_F_contig1435:16685..167481622927948.7804139-CDS-E-siliculosus-1a_F_contig1435:16685..16748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 16686..16748 -
1696318749.494333-CDS-E-siliculosus-1a_F_contig1435:16685..167481696318749.494333-CDS-E-siliculosus-1a_F_contig1435:16685..16748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 16686..16748 -
1622927948.794015-CDS-E-siliculosus-1a_F_contig1435:17261..174601622927948.794015-CDS-E-siliculosus-1a_F_contig1435:17261..17460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 17262..17460 -
1696318749.5022519-CDS-E-siliculosus-1a_F_contig1435:17261..174601696318749.5022519-CDS-E-siliculosus-1a_F_contig1435:17261..17460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 17262..17460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1435.2556.1

>prot_E-siliculosus-1a_F_contig1435.2556.1 ID=prot_E-siliculosus-1a_F_contig1435.2556.1|Name=mRNA_E-siliculosus-1a_F_contig1435.2556.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=158bp
MPSPKHRLTDGSPEYEYGMRTSLPPLAEVLENAGCRLFLDAMRKAGRLEG
ANSITIIAPNDGAFPSADAFDDSSWGLHIMDGAYKIGELVNFNGGRVQPQ
SLEPKHALIFRVEIGGHMVAYVSGETKPARRTRMVKTDLIARNGVFVHVV
DKILYAE*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1435:15597..17776-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1435.2556.1 ID=mRNA_E-siliculosus-1a_F_contig1435.2556.1|Name=mRNA_E-siliculosus-1a_F_contig1435.2556.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2180bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1435:15597..17776- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCTGACCCCCTCGTGTGACGAGCGTTGTGTGACTATTGCAGTACGTAGC
CCTACCCTATGTAGAGCGGATGGTGATCACTCGGCGGTAGCAGGCTCCAA
CTGGGTTCTTCCTTGGTTCTTGCTCCCTCTCGCTGCCCTCTAAACGCTCA
GCTCGGATTGGCTGATTCAAAACGAAACCGTTCGTTAGCGGACCGCCCTC
TCAAGCCCCTCAAGCTCAACACTGCCTGTCAGGAGCGGTGTATCTCCCAA
TCACCACGCAAATATCGCGGGAGCAGCTCACTCGTTCGTACCTGATGTTC
GACTTGGCTTGGCTGAATGCCAAGTCCGAAGCACCGCCTGACAGACGGGT
CCCCCGAGTACGAGTATGGGATGCGAACATCGCTACCGCCTTTGGCAGAG
GTGCTGGAAAATGCGGGTTGTCGCCTGTTCCTCGACGCCATGCGCAAAGC
GGGAAGACTTGAGGGGGCAAATAGCATAACCATTATCGCACCGAACGACG
GCGCCTTCCCTTCAGGTGTGAGGTCTTCTTAATTTTATTGTGTGCAATAT
GTAGCTCAAAGCGCGGGTAAGCGTAAAATGAGAAGGGTTCAACCTTCGGT
TGACCAGGACAACAACCTGGACGACCAGTCTAGACGACTACAGCAGTATG
GTAGTGATCGCACGGCTGAAACAAAGAGGCGGACGGTGCCGAGCCAAAGC
GAGATTGTACAGTTATTGCCGTGCCACCAGTATATTATGTTCACTCTGCG
TATTAGTCTACTGGACATCCGAGACTGTTATGCAAGTTTAAACACAAAGA
GTCTACAGAACTGTTCATTTTGGCACGACTACGCCGTGATTTGTGCGTTC
GTTCTCCTTCGTTATTTCGAATGCAGCGTTGCTCCTGCGCTATCTCGATG
CAGCGCACTGGCACGCTGTGATTTCATCACATATCTGTGCATGCATACCC
CACCTCTCGATGTCTTACGTTGGAACCGGTCTCGTTTGAGTGGTGTCCCA
TGATGTTGTTCTTGGGCGTCTTGTATAGCGGACGCGTTCGATGATTCTTC
GTGGGGACTGCACATCATGGACGGCGCCTATAAAATAGGAGGTGGGTATC
AATGAGCAGCAAAAACACGCTTCGACTAGTATTGTAGTATTGTTGTTCCG
TGACACCACACAATGGAAGAGTGGTCGTGGTCGGCATCTCTGGAACGTGA
TGCTCTCGCTCTACACAGCGATCCCAAGTCTGTTCCAACCAGCATCACCT
CAAATCTGTGCGGAGTTTCCGATCTGTCGATCCTGTGCATTTTCAACGCA
AAAGCCAAATAACCCTGTAACCCGATGGAAACTTCGTGTTTGTCGGCGCC
GATGCTCTTGAAATAACAGAACTGGTAAATTTCAACGGAGGTAGGGTGCA
GCCTCAGAGCCTGGAGCCAAAGCACGCTCTAATCTTCCGCGTCGAGATCG
GGGGCCATATGGTGTGTGAATACATGACGACAATCGCACAGGCAGAGGCG
AAGCAACCCATAACTCACAATATATAGTCTAGACTGGCAAGGACTCATGT
AGGCTATACGTGATGAAGTACGAGGCAATATGTGGTAGGTAGAAGCAGCG
CACAGGTAATTGCCTGCGCACAGATAATCGCACGTATCAACCGATGGGTC
GGAAGTGCTTCATTACGTGCGTGGGTCATGGCTGAAGCACGTAAAACCAA
ACGAAAGAGGGCAACGAAGCAAGTTTCCATAGTTTCGATCGCACCGGCAG
TGATTTAACGTGGAGCTCTAACGAACGCTACTCCACGAAGTGCGGCTTTT
GTTCTGTCAGAATACCTCAGCTGCCATGTAGGTATAGCGTCGTTGCTTGC
GTTTCTCGCTCAACGCTTCCTTGAAAATCCAGAGAGAGAACAGCTCATAG
GAGATATCATATAGTCTACTTCACCGTATGCATACCTTGCTCTCTATTCA
TGCTGGTTTCATTGAAAGGTGGCCTATGTCTCCGGCGAAACCAAGCCAGC
ACGCCGAACGCGCATGGTCAAGACGGATCTCATCGCCCGCAACGGAGTGT
TCGTACACGTCGTGGACAAAATCTTGTATGCGGAATAGTTTCTCCAGAAT
GGAGTTGGTTCTTTGCACGATGTTTAATCGTAAGGAAATAGTCCTTCTCC
ACCTTTCTTTTCGTGCGATCTGCAGCCGTC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1435:15597..17776-

>mRNA_E-siliculosus-1a_F_contig1435.2556.1 ID=mRNA_E-siliculosus-1a_F_contig1435.2556.1|Name=mRNA_E-siliculosus-1a_F_contig1435.2556.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1435:15597..17776- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCAAGTCCGAAGCACCGCCTGACAGACGGGTCCCCCGAGTACGAGTA
TGGGATGCGAACATCGCTACCGCCTTTGGCAGAGGTGCTGGAAAATGCGG
GTTGTCGCCTGTTCCTCGACGCCATGCGCAAAGCGGGAAGACTTGAGGGG
GCAAATAGCATAACCATTATCGCACCGAACGACGGCGCCTTCCCTTCAGA
TGCCAAGTCCGAAGCACCGCCTGACAGACGGGTCCCCCGAGTACGAGTAT
GGGATGCGAACATCGCTACCGCCTTTGGCAGAGGTGCTGGAAAATGCGGG
TTGTCGCCTGTTCCTCGACGCCATGCGCAAAGCGGGAAGACTTGAGGGGG
CAAATAGCATAACCATTATCGCACCGAACGACGGCGCCTTCCCTTCAGCG
GACGCGTTCGATGATTCTTCGTGGGGACTGCACATCATGGACGGCGCCTA
TAAAATAGGAGCGGACGCGTTCGATGATTCTTCGTGGGGACTGCACATCA
TGGACGGCGCCTATAAAATAGGAGAACTGGTAAATTTCAACGGAGGTAGG
GTGCAGCCTCAGAGCCTGGAGCCAAAGCACGCTCTAATCTTCCGCGTCGA
GATCGGGGGCCATATGAACTGGTAAATTTCAACGGAGGTAGGGTGCAGCC
TCAGAGCCTGGAGCCAAAGCACGCTCTAATCTTCCGCGTCGAGATCGGGG
GCCATATGGTGGCCTATGTCTCCGGCGAAACCAAGCCAGCACGCCGAACG
CGCATGGTCAAGACGGATCTCATCGCCCGCAACGGAGTGTTCGTACACGT
CGTGGACAAAATCTTGTATGCGGAATAGGTGGCCTATGTCTCCGGCGAAA
CCAAGCCAGCACGCCGAACGCGCATGGTCAAGACGGATCTCATCGCCCGC
AACGGAGTGTTCGTACACGTCGTGGACAAAATCTTGTATGCGGAATAG
back to top