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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig103.247.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.080e-27 Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 3
Query: 600 GECCYACNNEFSTVV-PIFCCRGCGKLFHGDCVGYNLDSRQSPPPDWVCPCCPDGERGPIERCVHLSLKGLGSVKQALGNQPWCPICLEDNRALGNKM 890
G C AC F+ V P F CR C KL+H CVGY +RQSPPPDW+CP CP GERGP + VHLS+ G G+VKQ GN PWCPICL D+R +K+
Sbjct: 119 GRGCEACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGPSPQ-VHLSVAGKGTVKQRKGNMPWCPICLRDDRLPNSKL 215
BLAST of mRNA_E-siliculosus-1a_F_contig103.247.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI) HSP 1 Score: 114 bits (285), Expect = 8.010e-24 Identity = 64/131 (48.85%), Postives = 73/131 (55.73%), Query Frame = 3
Query: 762 ERGPIERCVHLSLKGLGSV--KQALGNQPWCPICLEDNRALGNKMGTRCSTKCRGCGFQTHNHC-------------IAGLQIGADGRWPCDECQRRTDGVVL--GDNRVWMRLKAARLGGGFLVAP-SPL 1100
E GP + +H SL+G G Q GNQPWCP CL DNR G K S +C GCG TH C G ADG W CDEC+RR DGVV+ GD+ VW+RLKAARL GGF V+ SPL
Sbjct: 525 EHGPDDTHLHESLRGKGGAAPSQPRGNQPWCPNCLGDNRLPGEKTMGSDSKRCPGCGLHTHARCRRKRPEASPGAAGATGGXXAADGSWACDECKRREDGVVVAGGDDPVWLRLKAARLDGGFKVSSLSPL 655
BLAST of mRNA_E-siliculosus-1a_F_contig103.247.1 vs. uniprot
Match: A0A6H5L6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A7_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 2.530e-5 Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 3
Query: 975 GRWPCDECQRRTDGVVLG--DNRVWMRLKAARLGGGFLVA-PSPL 1100
G W CDEC+RR DGV + D+ VW+RLKAARL GGF V+ PSPL
Sbjct: 44 GSWACDECKRREDGVAVASADDPVWLRLKAARLDGGFKVSSPSPL 88
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 489 |
| Model size | 1142 |
| Exons | 4 |
| Ec32 ortholog | Ec-03_000240.1 |
| Ec32 ortholog description | Zinc finger, FYVE/PHD-type |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig103.247.1 >prot_E-siliculosus-1a_F_contig103.247.1 ID=prot_E-siliculosus-1a_F_contig103.247.1|Name=mRNA_E-siliculosus-1a_F_contig103.247.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=163bp
MAMTPPKIRWRVTAIDPGREKLPWCIPLGHAACVEDLASCWCPRKLESPR
FECGRARHCCRYSTFLRRRAMRCIPRRLASGFGSSRYQGCCFRCLSQRRR
GHHNRRLAFPRSTTSSASDASTSTSTRSSGRTDYNGSNTRPNPCLAWYQP
SHLFRQLFCTES* back to topmRNA from alignment at E-siliculosus-1a_F_contig103:4462..10730+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig103.247.1 ID=mRNA_E-siliculosus-1a_F_contig103.247.1|Name=mRNA_E-siliculosus-1a_F_contig103.247.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6269bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig103:4462..10730+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCATGTACATGGCCAGCAGCAAGGCCCCGCGGGCTACCATCGGCTGTGT
CTTGACATCATCTGTGTGCTTGCATGGCGATGACGCCGCCCAAAATCCGG
TGGAGGGTGACAGCGATCGATCCAGGCCGTGAGAAGCTGCCATGGTGCAT
CCCTCTGGGTCATGCCGCCTGTGTTGAAGATCTAGCCAGGTGAGTGCTAG
ACTACTGTACCAGATCCCTGCGGAGAAAGTCGTTGGGTGTTTGAAAACGA
GACTTCAGGCGAGATAAAGAAAGGAAACTAGTCTCTCGTCGTGGTTGGGG
ATTCTTGACGGGGACAATGTATAGAAAATTCAAGAGCTACATGATACAGC
GTGTTGCACAGTGTGATTTGCGCAGGATTCGACGGGGTTTCGTTCATGAT
GATGGTGTCTACCTACAAGTAGGATCCCTTGTGTAGTGCCCAGGAGTTCA
CTGGCACTACATATATACCGGACCGGCAACTTCCAAGTATTGAGAATGAC
TTGGAATTCGCTGTGTGCCCGCCGAAAACACCGGCAACAGTAGTCTAGAC
TATACCGGGCACCGGAACTGCACTAAACAGGGGCCTCAACTGTGTATGTA
GACTACAGCAGTACAGGTAAAGACCTAACTCTTTGGGCGGCATTGTCTAA
GCGTAAACTCATCCCCTTCGACCGCCGTGGTTATATCTCGAAACGGGTAG
TCTTTCTGTAGTTGTATTCATGTTTCCTAATAAATTCAGCTGTCCTGTTG
CTAAGCGCTGTCGCCGCCGAATTCCGGAAGGCAGGCACCCTCAGGGAGAC
GGCAGCTGTGGAGGGCTGAGGGAAAGAAACAACAACCTCCGTGTGAGGCT
GTGTGCGTGCTCCCAAAGTTACGCGGGTACCTATTTGGCAACGACCGTTT
CGCGTCCGACCCTGTCTGTAACTACAATGTAGAGAATCAACGTCACGACG
CATGTCACTAAAGATGTCAGGATTCTATCCTTGTCCCCGTACTATGTACT
GCTGCACGTATTGTAGGACGGGGCGTTTTCATCCCCAAGGTTTCACCGAG
GTGTGGGAGCGTCAAGATCACGACACCATGATGTCGGCTTGCTCCACTCC
AACACGAACAACATGAGACACTTATTACAATTCCAATTATGCCGGGATAT
TCCATGCCAAGTGCTCGCCGGCCAGGCTCGCCCTCGCCATACGCAGGCAT
ATCAAAACGGGACCCGTGTATCAACCACACCTGCGAATCTGAAAAACCAC
AACCAGACACAAAAAACAACAGAAGTAATTAATACAATAATCTACCCACG
TCACAGGGCCATTGGAACTGGGGGGTTATTTAAAAAACAGTACAAGTGTA
TGCAATAGTGTAAGACGGGCTTGTGCCGGACCCGGAAGCACCTTCTTTAT
TGCGTTTTCCCAAAAAAATAGATCATGAAGACACATGGGCACACACACAT
GGACACGCGACTGTTACCGGAGCCAGAAAAGGGAACAAATGAACGCTTGC
ATGTGATATCCTTTTGCCATTGTGCTGTTTAAGAATGTACGATGAAGAGG
TCAAAATGCGCTTGCCGAGATTTCAAGGCCGCCAACAAGCGATCAGGGGG
GGAATTTGGTACTTTCGAAGTCTACACCACCTTATGGGCAGAATATTGAT
TACCCCCCCTTTTTCTTTGCCCTTGCAGTGAACGATTTAGCCAGTGCGCG
GGGCTGCATGTTTTGAGAAGCGACGAGACTCAGCGAGACGGTAACGGAAC
GCGAACCCAAAGCGCCGGTTACATCCCATGTCTTCGATTGCTCCTTGAGG
TTGTTGGGAAAGGCGAAAGAAAGTGGTTGCATCCGCACGTCGAATTGTCG
GGTGCACACACCAAAACAATACGGGACGCACACATTTGGTTTCGTTTACA
GTAGCTGCTAATAAAAATGTTTTGCTCGTCTTTTTTCATGAGCCGCGGAG
CGCGAAGCGCGACCGTTCTTTCCCTCCGTCCGAGGAGGGACACAACAGGG
TCTATCTACCAGGGGTCCAAGTTTCAATGAACGACCGCCTGAATTTTCCG
TCCTTTTGGACCAGCACGAGGTCTATAGAGCACCGATTGATGGTCTGCTG
GCTTATGAGGAACAAGAAAAATAGGGCGCTCTTCACCACAACGATTTGGT
CGTGCTCCGACAGCAGATAACCGTGCTTCACCGGCATATGTACCCAAAAA
CCGTAGGAGATTTTTACCCCGAACCCCGCGGAGTTGTAGAGAAAATGCAA
GCCTATGCATCGTACATCTCCCACCCAACAGACACACGCGGTCGCTTGGT
TCACACCAGGAGAAACAGAGGAAGCACACAGCGAACCACCCAACACCGCC
GGGATGGCAAGACAACACTGGCGGGGGAAGGGAGCCATACATACACAGAG
CTAGTGGCGGATGTCATTGTCATCGCTGTTGCTTAGGTGGGTGGAGAGTG
ATCATCAGTAAAACCCAACCTTGGCCAGAGCGGAAAAAACGTACGACTGA
TCCCAGCAGACGCGGCGTTTTGCTTTCGGGCTGTCCCACACTCTCGCGCT
TGCAATTTCTGATCGTCCTAGATCCTCCTGGTCTCTATCAATCACCACAC
AAGACGGAGCGTGGACACAGCTCGTGCCGGATACATTTGTTATTGCTGTT
GCTTCGGTGTGCGGGGAGGGGTCACCTCCGATATGGAACGCACGTGTGCA
TATGCATACCACACACCGGTCTACTGCTGTGTAGCTGGGACAGCGCTTCA
GGGCTGGGACAGTGGTATTCGCCGCTTTTTTTCCCTTCCTAAAATGTACT
CTTCTTGATAAATCCACACTCAACCTGCTGTCCCAGCCCTGAAGCGCTGT
CCCAGCCATACACCCTCTGCTGTCCCGGTCCCCGATGCCCACCGTCCCAG
CTATACACTACCCGCTGCCGTGCTGTCCCGTCCCCGTTGGCCACGTCCCA
GCTTGGCTATATATATCGTATTCGCCGCCCCATTGGCCCGGCACATACAG
CTCAGACGCCAATACCCACTACCAACACCAGGCCTCACAATATGTTGTGT
TTGGGTGCGGTAGCTCGTCAGAGACCGAAAGAGAAAGAAGGTTGACTCAA
GACCTTGTTGCTTGGAGCGTGAGAGACATACGGTAGGCCACACCATCGCC
ATGCAGCATGTCCGTCAAAACATACCATCCGCGTATCCCCCGGAGGCCCC
ACAGACAGTATACTCTGCCGAGTACCCAAACAACTGCTGTACCGTCGGTG
ACATAAGATACCACACCCCAAAAATCTCGATTATTCCACAACGAACAGGA
TGCGTAAACTCAGAGAGACGCTGTCGGAAAGCTCTTGACGAGACGGTTCC
CGCACCACCACTTTCGGAGCCGCCACTCTTTGTGGTGTGGAGCAATCGAG
CTTTGGAAGTTGGTCCAGGGTGTGGTATCTTGTGTCATCTACGGAAAGAC
TACTACTGTATGCGCACGAATCCCAACGGCCGTCCGTGCGTTGCAGAGGA
AGAGCCTCTTTTTATGTTGTGGTTGTTGATGATGACTCGGATTCAATATT
CAACGGTCGGGTGCACTAGCCACCGAAAAAAGCATCGCAGATAGAAGACT
GCAAGGTATTGAGTCGGCTACCCCGGGGCTCGTTGCCCCGCCCTATCTAG
AAGTACAGGGGCCGAGGTGCTCTGAACAAGTCGACAGCTGCTGGAGAACA
GATTAATAGGTCCTGAACAGATCGCTTTATCCATAAACTGATCCCATGTT
TGCCCGTCTGCTGCTGTCTTGCCATCTGCACCGAACCAGAGCTGTTGGTG
TCCGAGAAAACTTGAATCGCCAAGATTCGAGTGCGGGAGGGCCAGACATT
GCTGTAGGTAAGAGGGAAATCCACCCGGTAATGTAGCACTGATCTACAGG
GCAGTGGAACGAGGGGCCATGACGAGAACCCTCCGGCAGCATATATTTCG
GTGCCGCGGAGGGAGTACCCCCGGTTGCGACATGATGCTCATGTGCGTGG
CGCAGAACCTAGGGTAGACCAGGAGGCCGGCAAGAACTTTAGAGAAGCAG
TGGTTGGGTTTGTTCTTGTTCTTCCGGGGGTATGACGTCGCGATAATTTC
ATCGACCCGGTTTGTTCGCGGCTAAACGTGTAGCCGCCTTGGGCAAGAAA
CGTTCGAGGGATGAAGCGCTCCGTCCCGCTCCGTGACGTTGGAGTTTGAC
GCTCCTCCACTCGTACGGCCAAGTTGCAAAAGTATCCGTTCCACCTTTGG
TATTTCCCAAAACAAGAAGCCCGCACTGCACGGTGATGTTTGCCAGCTGC
CACGACCGATCCATGCTAGTTTTCGGGGTTCTCGAACGAGTTCTACCGCG
TCAACATCAAGATCGGTACACTTCAATATGGAAAACAGAGAAGATGACAA
CCAGCAGATGGAGTATCGTTCGTTTCCTTTTGAACCCTCTTGCTTCAACC
CCCTTCCTCTTCCCAAAAGCCAGGCACATCCAGTTCGACCCGACCTAGCT
AGGGCTCTCCACCGACCACTGCTCTTGTCCTTGCCTTCGCTCGTCGAACC
TCGTGAACTGCTGCGTCAATCTCTACATTTGTTTGGCATTTATGGTGACG
ATTTTTCGTCAGAAATGAACTAGGGGTAACTGTCAACGCGCTGCGAAGTT
CAGCTCAGGCTTCAAACATTGTTACATATACACTGTGTGTAAGGGGTGCG
ATCTTTTTTCGGAGGCTAAAACCCGTGTCGCAAGGATGATTTGCGATATA
GGTATTTGCTTTGTACTGTTGATGGACAGCCGTTGCGCCTCTATTGATTT
CAATTATTGGACATAACCGCCGGACCAACGAACGATCTTGGGCGATCAGC
ACCGGAACAGTAAGTCTAGTACAGCATACTCCTGCAGATAAAATAAATAG
TTGCCTCGCTGTTCGCTCGAAAGGGTGCGGCTCAGCGGTGTCCATTGTGT
TGCTTGTAACCACTCAGGGCTACACAACCGCACGCCATTTTCGCACGTAC
GCAGCGCTACGCATTTTTACACAGCTCCTGTTCTAGAGAAGCTACCTTGC
GCTTCTTGTAGAGTCCGTGCCGAATCGACTGCTCATCTCATGAATAACGG
TCCATTTGCTCTTCCCGCTTGGTTCTACTCCTCTCGTGGGTTGACAACGA
CCTAGATATTCTACTTTCCTTCGGCGGAGAGCTATGCGCTGTATCCCCCG
GCGACTTGCTTCTGGATTTGGCTCCTCAAGGTACCAAGGTATGTTGCGTT
CAAGGTCCTATGTTGTGAACTGTACGCCTAGGCTTACCCACGCTCGAGCT
ACACGAATCCGGACCACTTGGTGGTAGATGTTTCAGCTCCTCCGATCACG
CACCTTGTTCTCCGCTTTCCTGCTGCTGAGCTGCTGCTGGCGAAGAGGGA
TTGAGCCCTCATTGACGGCCGCTTGTATCGCAATCGTACTCCTCTATGTT
TACGCTTCCTGCCAGGATGCTGTTTTCGTTGCTTGTCGCAAAGGAGACGG
GGACACCATAACCGCAGGCTTGCCTTCCCCCGCTCAACAACCAGCAGCGC
CAGTGACGCCAGCACTAGCACCAGCACCAGATCCAGCGGCCGAACGGATT
ACAACGGCAGCAACACCAGACCAAACCCGTGTCTCGCCTGGTACCAACCC
AGCCATCTCTTCCGGCAACTCTTCTGCACCGAGTCCTAGTGGAGCAGGAG
CTGGAGACACCAGCAGCGACAAGAGTGGGGAATGCTGCTACGCGTGCAAC
AACGAGTTTTCTACCGTCGTACCAATATTTTGCTGCCGGGGTTGCGGCAA
ACTCTTCCACGGGGACTGCGTAGGCTACAACCTCGATTCAAGGCAATCCC
CCCCACCCGATTGGGTTTGTCCCTGCTGCCCGGATGGCGAGCGTGGGCCT
ATCGAGAGATGCGTCCACCTGTCCTTGAAGGGCCTGGGGTCGGTAAAGCA
AGCCCTAGGGAACCAGCCGTGGTGCCCGATCTGCTTGGAAGACAATCGGG
CCCTGGGTAACAAGATGGGCACCAGGTGTTCGACGAAGTGCCGCGGTTGC
GGGTTCCAGACCCACAACCACTGTATTGCCGGGCTGCAGATCGGGGCAGA
TGGCAGGTGGCCGTGTGACGAGTGCCAGCGCCGAACAGACGGCGTCGTCC
TCGGCGACAACCGGGTTTGGATGCGGCTGAAGGCAGCCAGGTTGGGTGGG
GGGTTCCTTGTCGCCCCATCACCACTTGCGTTGAGTGGCAGGCCGACTAA
GGCGGCGGCCGCGGCGATG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig103:4462..10730+ >mRNA_E-siliculosus-1a_F_contig103.247.1 ID=mRNA_E-siliculosus-1a_F_contig103.247.1|Name=mRNA_E-siliculosus-1a_F_contig103.247.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=978bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig103:4462..10730+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGATGACGCCGCCCAAAATCCGGTGGAGGGTGACAGCGATCGATCC
AGGCCGTGAGAAGCTGCCATGGTGCATCCCTCTGGGTCATGCCGCCTGTG
TTGAAGATCTAGCCAGATGGCGATGACGCCGCCCAAAATCCGGTGGAGGG
TGACAGCGATCGATCCAGGCCGTGAGAAGCTGCCATGGTGCATCCCTCTG
GGTCATGCCGCCTGTGTTGAAGATCTAGCCAGCTGTTGGTGTCCGAGAAA
ACTTGAATCGCCAAGATTCGAGTGCGGGAGGGCCAGACATTGCTGTAGCT
GTTGGTGTCCGAGAAAACTTGAATCGCCAAGATTCGAGTGCGGGAGGGCC
AGACATTGCTGTAGATATTCTACTTTCCTTCGGCGGAGAGCTATGCGCTG
TATCCCCCGGCGACTTGCTTCTGGATTTGGCTCCTCAAGGTACCAAGATA
TTCTACTTTCCTTCGGCGGAGAGCTATGCGCTGTATCCCCCGGCGACTTG
CTTCTGGATTTGGCTCCTCAAGGTACCAAGGATGCTGTTTTCGTTGCTTG
TCGCAAAGGAGACGGGGACACCATAACCGCAGGCTTGCCTTCCCCCGCTC
AACAACCAGCAGCGCCAGTGACGCCAGCACTAGCACCAGCACCAGATCCA
GCGGCCGAACGGATTACAACGGCAGCAACACCAGACCAAACCCGTGTCTC
GCCTGGTACCAACCCAGCCATCTCTTCCGGCAACTCTTCTGCACCGAGTC
CTAGGATGCTGTTTTCGTTGCTTGTCGCAAAGGAGACGGGGACACCATAA
CCGCAGGCTTGCCTTCCCCCGCTCAACAACCAGCAGCGCCAGTGACGCCA
GCACTAGCACCAGCACCAGATCCAGCGGCCGAACGGATTACAACGGCAGC
AACACCAGACCAAACCCGTGTCTCGCCTGGTACCAACCCAGCCATCTCTT
CCGGCAACTCTTCTGCACCGAGTCCTAG back to top
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