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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1029.244.1 vs. uniprot
Match: D7FLX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX9_ECTSI) HSP 1 Score: 288 bits (738), Expect = 4.930e-96 Identity = 182/229 (79.48%), Postives = 189/229 (82.53%), Query Frame = 1 Query: 1 MEVGNMAYLAVVIEAIIALTETGKRASLLPSLKKQLPRVKSKLRSAIQAGVEDGSLVKAIRGSSESRRYGPLGNFLRNLLLIVTSYKLGSAGGKTSSXXXXXXXXXXXXXXX---ALVVRASKSATAAGRKNASKRKTRVSTPAKAPSTAVSNAGK-IAAVLWPGRRTADPARKTASVKRAGKPATVVSRRTAAAAGKKRAAVARKKTLTKGSTVAKIKAATGKKVAKR 675
MEVGNMAYLAVV+EAIIAL ETGKRASLLPSLKKQLPRVKSKLRSAIQAGVEDGSLVKAIRGS +SRRYGPLG+ LR L+LI +YKLGSAGGKTS A VVRAS SATAA RK+ASKRKTRVST AKAPSTAVSNAGK IAAV WPGRRT ARKTA VKRAGKPATVVSR TAAAAGKKRAAVARKKT+TKG TVAK KA T KKVAKR
Sbjct: 1 MEVGNMAYLAVVVEAIIALAETGKRASLLPSLKKQLPRVKSKLRSAIQAGVEDGSLVKAIRGSRDSRRYGPLGSLLRTLVLIAKTYKLGSAGGKTSRSSVARGKKKPMVTVTRRKAEVVRASDSATAARRKSASKRKTRVSTSAKAPSTAVSNAGKKIAAVFWPGRRTGKSARKTACVKRAGKPATVVSRWTAAAAGKKRAAVARKKTVTKGRTVAKTKATTSKKVAKR 229
BLAST of mRNA_E-siliculosus-1a_F_contig1029.244.1 vs. uniprot
Match: A0A6H5J777_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J777_9PHAE) HSP 1 Score: 256 bits (654), Expect = 3.070e-83 Identity = 166/248 (66.94%), Postives = 182/248 (73.39%), Query Frame = 1 Query: 1 MEVGNMAYLAVVIEAIIALTETGKRASLLPSLKKQLPRVKSKLRSAIQAGVEDGSLVKAIRGSSESRRYGPLGNFLRNLLLIVTSYKLGSAGGKTSSXXXXXXXXXXXXXXXALVVRASKSATAAGRKN------------------------ASKRKTRVSTPAKAPSTAVSNAGKIAAVLWPGRRTADPARKTASVKRAGKPATVVSRRTAAAAGKKRAAVARKKTLTKGSTVAKIKAATGKKVAK 672
M VGN+AY+AVV+EAIIA+TETG RASLLPSLKKQLPR+KSKLRSAIQ GVEDGSL KAIRGS +SRR+GPLG+FLR +LLI YKLGSAGGKTS+ V K T R+ ASK+KTRVST AKAPSTAVSNAGKIAAVLWPG RTA+PA+KTASVKRAGKPATVVSRRTA AAGKKRAAVAR+KT+TKG TVAKIKA T KKVAK
Sbjct: 1 MAVGNVAYIAVVVEAIIAVTETGNRASLLPSLKKQLPRMKSKLRSAIQTGVEDGSLAKAIRGSRDSRRHGPLGSFLRTILLIA--YKLGSAGGKTSTSS----------------VAKRKMRTVVTRRKXXXXXXXXXXXXXXXXXXXXXXXXASKKKTRVSTSAKAPSTAVSNAGKIAAVLWPGWRTANPAKKTASVKRAGKPATVVSRRTALAAGKKRAAVARRKTVTKGGTVAKIKATTSKKVAK 230
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 678 |
| Model size | 678 |
| Exons | 4 |
| Ec32 ortholog | Ec-22_000130.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1029.244.1 >prot_E-siliculosus-1a_F_contig1029.244.1 ID=prot_E-siliculosus-1a_F_contig1029.244.1|Name=mRNA_E-siliculosus-1a_F_contig1029.244.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=226bp
MEVGNMAYLAVVIEAIIALTETGKRASLLPSLKKQLPRVKSKLRSAIQAG
VEDGSLVKAIRGSSESRRYGPLGNFLRNLLLIVTSYKLGSAGGKTSSSVA
KRKKKPIVTRRKALVVRASKSATAAGRKNASKRKTRVSTPAKAPSTAVSN
AGKIAAVLWPGRRTADPARKTASVKRAGKPATVVSRRTAAAAGKKRAAVA
RKKTLTKGSTVAKIKAATGKKVAKR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1029:30461..34621+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1029.244.1 ID=mRNA_E-siliculosus-1a_F_contig1029.244.1|Name=mRNA_E-siliculosus-1a_F_contig1029.244.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4161bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1029:30461..34621+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGGTCGGGAACATGGCATATCTTGCGGTGAGCAACAATAACAACGG
TTCCCCGGGGTCTTGCGTCGGTGTTGCGCCGCGTTTTCGCTGTGCTGCAA
CCGTCCTGGCTGTTTGTGTTCGTGTTGTTGGGCTGTCGCAGGGACATGCG
TTGTTCAACAGGAAGAAGGTCGTGCCGTGTATTGAGGAAGTGTTTCCTCG
TGGTCGCGGCGATGAATGCTGCTGTATCATTACTTTATTGTTAATTGTTG
TTATATTTTTTCAATACGAAGGAACCCATTTATTTTCCTGTCATCATCCC
GTTTGTGCTGTCAAACCTCTCGGTACAATTCACAACACAACAGCCAGGGT
CACAAAGGAGGAAGGTCACGCAGACGGGAGTTGAATTCTCCGCCTTCGTT
CCTGCGATGCATGCCTTGATTTTACGAGTACTTCAGATAGCAGAAAAAAA
TAGGGGTTGCTTGCAACGTTGGCGCAGACCAAAACACCCCCTATTATTCC
AGTGACGGAGGGTATAGGAGCACGCCCTTCCACGCTGGAAGTGGCATCGT
TCTAACCAGCAATTGACGATTGTTTGGGGTGAACGATGCCGAAAACGACC
ACCGCTGGTACATTCCGCCTCTGCTTCCATTCAGAGTCGCCTCACTCCCC
CGGTGCGTGCGCGTGATCGGTGTGGTACTGGGGTCGACAGTTGGTTGCGG
ATGTTGTGACCTATCATTTCATAGCAAGCAGTGTACTTGACTTGAGTTGC
GATGTACAGCAGTATGCATGTAAAGGAACTGTGGGGTAGAGTACCGTAGC
GCACCCACCGCCCAACCATGCCCGACACAACAACAACACTAGAATACAAC
CACAAAACAGATTATTCACACACAACACATAATACACATTACATGCATAG
TCTAGCATACGTAGACATTTTTTGTTGTTGGGTTGATGGGATGGCTTGCG
GCAGGGGGGGGCAACTACAGCAGCAGCAGCAGTAGTTCTATAACTCGCCC
AGCTCTCTGCTCTGAATAGATATACCCTCTTTTCACGAAAAGAAAAAAAA
TGTATGCATACAATAGCCAGGAGTATGCATACGGCTGTAGTACTCCATCA
AACTAATTTTCTACAAGAGGCTTGGCATGATATCCGGCGGTGCCGTACGA
ACTCGACCCACATCGTCACGGTACCATCCCTCTGCATTTGGTTTGTGGCA
GGTGGTTATCGAGGCGATTATCGCGCTCACAGAGACGGGAAAACGCGCTT
CGCTCCTGCCGTCGCTGAAGAAGCAGCTGCCAAGGGTGAAGAGCAAGCTG
CGGTCGGCGATACAGGCCGGGGTCGAGGACGGCTCGCTAGTGAAGGTATT
AATTAGTCTAAACGCGTGTGCCTATGTAAGCCGTATTTCTTCAAACTGGG
TCGACCGCGCGAACCGCTTGATGTTGGCAGTACTATCCCGGGGTGACAAA
CACAAGTTGGCGCTCTCCCCAAGGGCTATCGCAAAGAAAGGGAGCCGAAG
AAAAAACGAGAGCCGCGGCGAGAAAAAAACGGCATGGTCCAGTGTCCAAT
GTCCGGTTTCAGAGTGTAAATAAACAATTCTGACACAACAACACCACAAC
GAAACACTCTCTGCGATATCTGCTCTTCTGCTAGCATCCTTATCCTGCAG
CTGGTCTTTATCTGCCCGGCACTTGTCTTGGTTTAATAGGACTCTTCTCT
ACACCAGTGGATTCAGAACATTCTGGAATCGAAACATGAATATCCCTCCC
TATCCTTTGTTCCTGGACCTCTTTCCACTATCTAACTCTGAAGGTCCATA
TACACCAGTTGGCGTTGTTGACGGTTGTACAGAAAAGATTATGGATCGAA
GACCTCGCGTATCTTTACACCAACGTCTATCGCCCCGCTTGTGCCTGCAC
GAGAAAAAGCGAAAGAGCGAAAGAGTGAGAGAGAGAGAGAGAGAGAGAAA
TAGAGACAGACAGACAGACAGACAGACAGACAGACGGACGGACGGAGGGA
CAGAGAGTCGACTCGCCACCCCCTAAGTGGACAACGATACAAGGTTGTTG
GTTAAAACGTTTGTGTATCACTGTTCTTACTAAGATGCCACCCACCTAAC
GGGTTTGTGCGCTCCTGCTATTATTCCAAGTTCACGTGCATGGCTGCTGC
GTGTATGTGAAAGCGTATTCCTCTCTTAACAAGAGCTAGAAGCAACATAG
AAGCTACCCTGGGCCATCAGCATGGACGCAAAGCTGACCAACCCTTTGCA
TCCCGTGCGCGTTTGTTGCCGCCGTCGTGATTTTCCCCGGATTTTTCCTG
CTTTGGCCATCAACCTGTGTCCTCGGTATGACAAAAAAATACACGAACAC
TTTGTGGTGGACACGACCCACAAACGAAGGCGATCAGGGGCAGCAGCGAG
TCTCGACGATATGGTCCTCTTGGGAACTTCCTCCGGAATCTCTTGCTTAT
TGTGAGTGGTTGACCTCGGTCACAGCGGCCACCCCGTCCTCGTGTCTGAC
AGAGCCGAAGAGCACATGTTCCACCGGAAAGTTTACTATAATAGTAATTC
AAGCGTTGCAGGAAAGGGAAGCGTGGTGCATCACAGTATATGTATCGTGA
AACGTTGCAGAGAGTCAGGCCAGTCGATGTGGGAAACTGTTGGATGGGCA
GTTCATCTATTCATGCACCTGTTGCCTCTTCTAGCAGCGCCTTGAACGTT
TGGTTGGCGAACATGGTCGTACACCTAAGAAGCGTAAAACCCTTTAAACA
CATCACGGTTCATGTAGACTATGCGCTTGCTTTCTACGATTTATTTTGCT
GCGTGAGCATCCTTCATTTTAGGGGTGTACTCTCATGTAAACGCACGCCG
TAGTCGTTAGAGCATTGACCTCGCATCCCTTCAGTACCAGCACGGAGCGA
TATTCCGGATCAATTCCGGCCCAGGCTGCATGTCATAAGGACGAAATAGA
ACAGCTGGTCATCGTCCTTGCGTTTGCTGTGCCAATCCAGATATGCTATG
AGTTGATTGGGCATTTTGGGGGGGGGTGTACTCATAGTCGTGCATGCCGT
AGTCGTTAGACCATGGACCTCGCATCCCTACAAAGCCGGGACGGAGCACG
CCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGGACGAAGCGCCGT
GAGGTATTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCTGCTAAGGGTG
TTCGGCATCTTGTGCTTACTTCCTTGCGTACGGATGACAGCTGCGTATTA
CTTTATTTATTTTCTGGTTCTTTGACTTCCAGGGACATTGTAAGCACTGT
GTAACTGCCTCGAGGGTCTTGACCAATTTTAGCACAACGTGGTGCGATTA
TCCCCTTTGCGCGGAATGAGGGTTCTCGAACCCGCACAACATAATCTGCT
CGACCACCATTCATGGTTACCGCAAAAAAAACAAGGGCAAAAAAATAACT
GCAACCTGGTTGCCGAGCTCACGAAGTGATCGGCTTGTTTTACAACATCG
CTGCCAAGCGACGAAACCCCAACCCCGATGGCAAACACCGGGGGGGGCGG
GGGGGGGTAATTCTACCGCGTGCGTGTCCATTCCGAATCGTGTCAACTCA
ATAGCCGCTCTGATTCGGGGCTCCTGCTCAAACAGCTTCACGAGGGAGCA
CCCTCCGCTCCACTCCTGGTGCCTAAAAATAGCTTAGTATCATTGATTTT
GCACGGCCCGAAAAATATTTCCACAGGCCAAAGCGTCGTACAAGCTCGGC
TCCGCGGGAGGAAAGACGTCATCATCTGTCGCCAAAAGAAAGAAGAAGCC
CATCGTCACCAGGAGAAAGGCACTAGTCGTCAGAGCGAGCAAGTCCGCCA
CCGCCGCTGGGAGGAAAAACGCCTCGAAAAGGAAGACTAGGGTTTCCACG
CCGGCGAAGGCGCCCTCCACCGCCGTCTCGAACGCTGGCAAGATCGCTGC
TGTGCTTTGGCCCGGGCGGCGGACCGCTGACCCCGCCAGAAAGACCGCTT
CCGTCAAGAGAGCCGGGAAGCCGGCAACGGTAGTGTCGAGACGGACAGCG
GCAGCAGCCGGGAAAAAGAGGGCTGCGGTAGCGAGGAAGAAGACCCTCAC
CAAGGGGAGCACCGTCGCAAAGATCAAGGCAGCAACGGGCAAGAAGGTTG
CCAAAAGATGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1029:30461..34621+ >mRNA_E-siliculosus-1a_F_contig1029.244.1 ID=mRNA_E-siliculosus-1a_F_contig1029.244.1|Name=mRNA_E-siliculosus-1a_F_contig1029.244.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1029:30461..34621+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGGTCGGGAACATGGCATATCTTGCGATGGAGGTCGGGAACATGGC
ATATCTTGCGGTGGTTATCGAGGCGATTATCGCGCTCACAGAGACGGGAA
AACGCGCTTCGCTCCTGCCGTCGCTGAAGAAGCAGCTGCCAAGGGTGAAG
AGCAAGCTGCGGTCGGCGATACAGGCCGGGGTCGAGGACGGCTCGCTAGT
GAAGGTGGTTATCGAGGCGATTATCGCGCTCACAGAGACGGGAAAACGCG
CTTCGCTCCTGCCGTCGCTGAAGAAGCAGCTGCCAAGGGTGAAGAGCAAG
CTGCGGTCGGCGATACAGGCCGGGGTCGAGGACGGCTCGCTAGTGAAGGC
GATCAGGGGCAGCAGCGAGTCTCGACGATATGGTCCTCTTGGGAACTTCC
TCCGGAATCTCTTGCTTATTGTGAGCGATCAGGGGCAGCAGCGAGTCTCG
ACGATATGGTCCTCTTGGGAACTTCCTCCGGAATCTCTTGCTTATTGTGA
CGTCGTACAAGCTCGGCTCCGCGGGAGGAAAGACGTCATCATCTGTCGCC
AAAAGAAAGAAGAAGCCCATCGTCACCAGGAGAAAGGCACTAGTCGTCAG
AGCGAGCAAGTCCGCCACCGCCGCTGGGAGGAAAAACGCCTCGAAAAGGA
AGACTAGGGTTTCCACGCCGGCGAAGGCGCCCTCCACCGCCGTCTCGAAC
GCTGGCAAGATCGCTGCTGTGCTTTGGCCCGGGCGGCGGACCGCTGACCC
CGCCAGAAAGACCGCTTCCGTCAAGAGAGCCGGGAAGCCGGCAACGGTAG
TGTCGAGACGGACAGCGGCAGCAGCCGGGAAAAAGAGGGCTGCGGTAGCG
AGGAAGAAGACCCTCACCAAGGGGAGCACCGTCGCAAAGATCAAGGCAGC
AACGGGCAAGAAGGTTGCCAAAAGATGACGTCGTACAAGCTCGGCTCCGC
GGGAGGAAAGACGTCATCATCTGTCGCCAAAAGAAAGAAGAAGCCCATCG
TCACCAGGAGAAAGGCACTAGTCGTCAGAGCGAGCAAGTCCGCCACCGCC
GCTGGGAGGAAAAACGCCTCGAAAAGGAAGACTAGGGTTTCCACGCCGGC
GAAGGCGCCCTCCACCGCCGTCTCGAACGCTGGCAAGATCGCTGCTGTGC
TTTGGCCCGGGCGGCGGACCGCTGACCCCGCCAGAAAGACCGCTTCCGTC
AAGAGAGCCGGGAAGCCGGCAACGGTAGTGTCGAGACGGACAGCGGCAGC
AGCCGGGAAAAAGAGGGCTGCGGTAGCGAGGAAGAAGACCCTCACCAAGG
GGAGCACCGTCGCAAAGATCAAGGCAGCAACGGGCAAGAAGGTTGCCAAA
AGATGA back to top
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