prot_E-siliculosus-1a_F_contig14043.2400.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig14043.2400.1
Unique Name	prot_E-siliculosus-1a_F_contig14043.2400.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	182

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 5.460e-130
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0

Query:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAAS+EEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 4.460e-129
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0

Query:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: Q5SFY7_9PHAE (Photosystem II protein D1 (Fragment) n=10 Tax=Phaeophyceae TaxID=2870 RepID=Q5SFY7_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 4.010e-118
Identity = 166/170 (97.65%), Postives = 168/170 (98.82%), Query Frame = 0

Query:   13 DWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            DWG FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct:    1 DWGHFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 170

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A7S9KII2_9PHAE (Photosystem II protein D1 (Fragment) n=2 Tax=Dictyota TaxID=2875 RepID=A0A7S9KII2_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 5.960e-117
Identity = 165/171 (96.49%), Postives = 167/171 (97.66%), Query Frame = 0

Query:   12 RDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            R  GTFATWITSTENRLYIGWFGCLMIPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct:    1 RGLGTFATWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 171

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A895I2I7_9PHAE (PsbA (Fragment) n=1 Tax=Ericaria amentacea TaxID=2778316 RepID=A0A895I2I7_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 1.180e-116
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0

Query:   18 ATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            ATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGT NF
Sbjct:    1 ATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTLNF 165

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A7S4W941_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W941_9STRA)

HSP 1 Score: 340 bits (871), Expect = 2.340e-116
Identity = 164/182 (90.11%), Postives = 169/182 (92.86%), Query Frame = 0

Query:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            M ATLERRE    W  F  WITSTENRLYIGWFGCLM PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIG+HFYPIWEAAS++EWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct:    1 MTATLERREGVSLWERFCAWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGMHFYPIWEAASIDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A451FLR3_9STRA (Photosystem II protein D1 n=179 Tax=Eukaryota TaxID=2759 RepID=A0A451FLR3_9STRA)

HSP 1 Score: 342 bits (877), Expect = 5.250e-116
Identity = 163/182 (89.56%), Postives = 170/182 (93.41%), Query Frame = 0

Query:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            M ATLERRE    W  F +WITSTENRLYIGWFG LMIP LLTA SC+II FIAAPPVDIDGIREPVAGSLLYGNNIISGA++PSSNAIGIHFYPIWEAAS++EWLYNGGPYQLIVFHFL+GVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct:    1 MTATLERREGTSLWERFCSWITSTENRLYIGWFGVLMIPLLLTATSCFIIGFIAAPPVDIDGIREPVAGSLLYGNNIISGAIVPSSNAIGIHFYPIWEAASLDEWLYNGGPYQLIVFHFLLGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A8K1PKV9_9PHAE (PsbA (Fragment) n=1 Tax=Dictyota cf. canaliculata TaxID=2856270 RepID=A0A8K1PKV9_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 7.320e-116
Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 0

Query:   17 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNF
Sbjct:    1 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLLYPIGQGSFSDGMPLGISGTFNF 166

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A8K1PMX9_9PHAE (PsbA (Fragment) n=1 Tax=Lobospira bicuspidata TaxID=157157 RepID=A0A8K1PMX9_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 1.690e-115
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 0

Query:   17 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVE+WLYNGGPYQLIVFHFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct:    1 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEKWLYNGGPYQLIVFHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 166

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BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A8K1UI31_9PHAE (PsbA (Fragment) n=1 Tax=Dictyota cf. liturata TaxID=2856273 RepID=A0A8K1UI31_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 1.760e-115
Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 0

Query:   17 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
            FATWITSTENRLYIGWFGCLMIPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFL+GV+ +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct:    1 FATWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVSSYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 166

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBA_ECTSI	5.460e-130	99.45	Photosystem II protein D1 n=1129 Tax=Eukaryota Tax...	[more]
A0A1N7TJI8_9PHAE	4.460e-129	98.35	Photosystem II protein D1 n=412 Tax=Eukaryota TaxI...	[more]
Q5SFY7_9PHAE	4.010e-118	97.65	Photosystem II protein D1 (Fragment) n=10 Tax=Phae...	[more]
A0A7S9KII2_9PHAE	5.960e-117	96.49	Photosystem II protein D1 (Fragment) n=2 Tax=Dicty...	[more]
A0A895I2I7_9PHAE	1.180e-116	97.58	PsbA (Fragment) n=1 Tax=Ericaria amentacea TaxID=2...	[more]
A0A7S4W941_9STRA	2.340e-116	90.11	Hypothetical protein (Fragment) n=2 Tax=Ditylum br...	[more]
A0A451FLR3_9STRA	5.250e-116	89.56	Photosystem II protein D1 n=179 Tax=Eukaryota TaxI...	[more]
A0A8K1PKV9_9PHAE	7.320e-116	96.99	PsbA (Fragment) n=1 Tax=Dictyota cf. canaliculata ...	[more]
A0A8K1PMX9_9PHAE	1.690e-115	97.59	PsbA (Fragment) n=1 Tax=Lobospira bicuspidata TaxI...	[more]
A0A8K1UI31_9PHAE	1.760e-115	96.99	PsbA (Fragment) n=1 Tax=Dictyota cf. liturata TaxI...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 2..182 e-value: 4.8E-10 score: 41.1
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 14..182
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 28..182 e-value: 1.1E-51 score: 175.6
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 1..182
None	No IPR available	PANTHER	PTHR33149:SF20		coord: 1..182
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 29..55
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 141..164
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 76..97
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 109..129
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 130..140
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 56..75
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 98..108
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..28
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 165..182
None	No IPR available	TMHMM	TMhelix		coord: 141..163
None	No IPR available	TMHMM	TMhelix		coord: 30..52
None	No IPR available	TMHMM	TMhelix		coord: 109..128

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig14043	contig	E-siliculosus-1a_F_contig14043:2..547 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig14043.2400.1	mRNA_E-siliculosus-1a_F_contig14043.2400.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig14043 2..547 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig14043.2400.1 ID=prot_E-siliculosus-1a_F_contig14043.2400.1|Name=mRNA_E-siliculosus-1a_F_contig14043.2400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=182bp
MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYII
AFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAA
SVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAP
VAAASAVFLVYPIGQGSFSDGMPLGISGTFNF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000484	Photo_RC_L/M
IPR036854	Photo_II_D1/D2_sf