mRNA_E-siliculosus-1a_F_contig14043.2400.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI) HSP 1 Score: 377 bits (969), Expect = 5.460e-130 Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 1
Query: 1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAAS+EEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct: 1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE) HSP 1 Score: 375 bits (963), Expect = 4.460e-129 Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 1
Query: 1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct: 1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: Q5SFY7_9PHAE (Photosystem II protein D1 (Fragment) n=10 Tax=Phaeophyceae TaxID=2870 RepID=Q5SFY7_9PHAE) HSP 1 Score: 346 bits (887), Expect = 4.010e-118 Identity = 166/170 (97.65%), Postives = 168/170 (98.82%), Query Frame = 1
Query: 37 DWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
DWG FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct: 1 DWGHFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 170
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A7S9KII2_9PHAE (Photosystem II protein D1 (Fragment) n=2 Tax=Dictyota TaxID=2875 RepID=A0A7S9KII2_9PHAE) HSP 1 Score: 341 bits (875), Expect = 5.960e-117 Identity = 165/171 (96.49%), Postives = 167/171 (97.66%), Query Frame = 1
Query: 34 RDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
R GTFATWITSTENRLYIGWFGCLMIPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct: 1 RGLGTFATWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 171
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A895I2I7_9PHAE (PsbA (Fragment) n=1 Tax=Ericaria amentacea TaxID=2778316 RepID=A0A895I2I7_9PHAE) HSP 1 Score: 339 bits (869), Expect = 1.180e-116 Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 1
Query: 52 ATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
ATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGT NF
Sbjct: 1 ATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTLNF 165
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A7S4W941_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W941_9STRA) HSP 1 Score: 340 bits (871), Expect = 2.340e-116 Identity = 164/182 (90.11%), Postives = 169/182 (92.86%), Query Frame = 1
Query: 1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
M ATLERRE W F WITSTENRLYIGWFGCLM PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIG+HFYPIWEAAS++EWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct: 1 MTATLERREGVSLWERFCAWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGMHFYPIWEAASIDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A451FLR3_9STRA (Photosystem II protein D1 n=179 Tax=Eukaryota TaxID=2759 RepID=A0A451FLR3_9STRA) HSP 1 Score: 342 bits (877), Expect = 5.250e-116 Identity = 163/182 (89.56%), Postives = 170/182 (93.41%), Query Frame = 1
Query: 1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
M ATLERRE W F +WITSTENRLYIGWFG LMIP LLTA SC+II FIAAPPVDIDGIREPVAGSLLYGNNIISGA++PSSNAIGIHFYPIWEAAS++EWLYNGGPYQLIVFHFL+GVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct: 1 MTATLERREGTSLWERFCSWITSTENRLYIGWFGVLMIPLLLTATSCFIIGFIAAPPVDIDGIREPVAGSLLYGNNIISGAIVPSSNAIGIHFYPIWEAASLDEWLYNGGPYQLIVFHFLLGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 182
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A8K1PKV9_9PHAE (PsbA (Fragment) n=1 Tax=Dictyota cf. canaliculata TaxID=2856270 RepID=A0A8K1PKV9_9PHAE) HSP 1 Score: 335 bits (858), Expect = 7.320e-116 Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 1
Query: 49 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNF
Sbjct: 1 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLLYPIGQGSFSDGMPLGISGTFNF 166
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A8K1PMX9_9PHAE (PsbA (Fragment) n=1 Tax=Lobospira bicuspidata TaxID=157157 RepID=A0A8K1PMX9_9PHAE) HSP 1 Score: 337 bits (863), Expect = 1.690e-115 Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 1
Query: 49 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVE+WLYNGGPYQLIVFHFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct: 1 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEKWLYNGGPYQLIVFHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 166
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Match: A0A8K1UI31_9PHAE (PsbA (Fragment) n=1 Tax=Dictyota cf. liturata TaxID=2856273 RepID=A0A8K1UI31_9PHAE) HSP 1 Score: 335 bits (860), Expect = 1.760e-115 Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 1
Query: 49 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 546
FATWITSTENRLYIGWFGCLMIPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFL+GV+ +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF
Sbjct: 1 FATWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVSSYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNF 166 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14043.2400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14043.2400.1 >prot_E-siliculosus-1a_F_contig14043.2400.1 ID=prot_E-siliculosus-1a_F_contig14043.2400.1|Name=mRNA_E-siliculosus-1a_F_contig14043.2400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=182bp MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIback to top mRNA from alignment at E-siliculosus-1a_F_contig14043:2..547- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14043.2400.1 ID=mRNA_E-siliculosus-1a_F_contig14043.2400.1|Name=mRNA_E-siliculosus-1a_F_contig14043.2400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14043:2..547- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14043:2..547- >mRNA_E-siliculosus-1a_F_contig14043.2400.1 ID=mRNA_E-siliculosus-1a_F_contig14043.2400.1|Name=mRNA_E-siliculosus-1a_F_contig14043.2400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14043:2..547- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |