prot_E-siliculosus-1a_F_contig14016.2380.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig14016.2380.1
Unique Nameprot_E-siliculosus-1a_F_contig14016.2380.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length66
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14016.2380.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.420e-10
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 0 
Query:    1 VRRLVVSVVLANTSDSLLDGRCFRQTLRVASEIWRGFRSHCKVELAVLLDGFLLKTLR 58
            +RRLVVS+V+  +++ L+D R FR  L + + +W+ FR HCKVELAVL++  +LK LR
Sbjct: 1402 IRRLVVSLVINISAEVLMDERIFRLVLELVTALWKRFRRHCKVELAVLMENLVLKLLR 1459
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BLAST of mRNA_E-siliculosus-1a_F_contig14016.2380.1 vs. uniprot
Match: B7G9T2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9T2_PHATC)

HSP 1 Score: 55.8 bits (133), Expect = 1.870e-7
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 0 
Query:    1 VRRLVVSVVLANTSDSLLDGRCFRQTLRVASEIWRG--FRSHCKVELAVLLDGFLLKTLRAPSPQVRF 66
            +RR+VV  +L NT  +L D + F++ +R+ SE+W    +RSHCKVEL VL++ + ++ L    PQ  F
Sbjct: 1015 IRRMVVPCLLENTRHALEDPQIFQRVVRIVSELWSSPIYRSHCKVELGVLMEHYGVRILNL-GPQFLF 1081
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14016.2380.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZFI0_9STRA1.420e-1050.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7G9T2_PHATC1.870e-741.18Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14016contigE-siliculosus-1a_F_contig14016:905..1102 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14016.2380.1mRNA_E-siliculosus-1a_F_contig14016.2380.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig14016 905..1102 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig14016.2380.1 ID=prot_E-siliculosus-1a_F_contig14016.2380.1|Name=mRNA_E-siliculosus-1a_F_contig14016.2380.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=66bp
VRRLVVSVVLANTSDSLLDGRCFRQTLRVASEIWRGFRSHCKVELAVLLD
GFLLKTLRAPSPQVRF
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