mRNA_E-siliculosus-1a_F_contig14016.2380.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14016.2380.1
Unique NamemRNA_E-siliculosus-1a_F_contig14016.2380.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14016.2380.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.420e-10
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 VRRLVVSVVLANTSDSLLDGRCFRQTLRVASEIWRGFRSHCKVELAVLLDGFLLKTLR 174
            +RRLVVS+V+  +++ L+D R FR  L + + +W+ FR HCKVELAVL++  +LK LR
Sbjct: 1402 IRRLVVSLVINISAEVLMDERIFRLVLELVTALWKRFRRHCKVELAVLMENLVLKLLR 1459
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BLAST of mRNA_E-siliculosus-1a_F_contig14016.2380.1 vs. uniprot
Match: B7G9T2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9T2_PHATC)

HSP 1 Score: 55.8 bits (133), Expect = 1.870e-7
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 VRRLVVSVVLANTSDSLLDGRCFRQTLRVASEIWRG--FRSHCKVELAVLLDGFLLKTLRAPSPQVRF 198
            +RR+VV  +L NT  +L D + F++ +R+ SE+W    +RSHCKVEL VL++ + ++ L    PQ  F
Sbjct: 1015 IRRMVVPCLLENTRHALEDPQIFQRVVRIVSELWSSPIYRSHCKVELGVLMEHYGVRILNL-GPQFLF 1081
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14016.2380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZFI0_9STRA1.420e-1050.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7G9T2_PHATC1.870e-741.18Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14016contigE-siliculosus-1a_F_contig14016:905..1102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size198
Model size198
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.3315463-CDS-E-siliculosus-1a_F_contig14016:904..11021622927918.3315463-CDS-E-siliculosus-1a_F_contig14016:904..1102Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14016 905..1102 -
1696318736.4746785-CDS-E-siliculosus-1a_F_contig14016:904..11021696318736.4746785-CDS-E-siliculosus-1a_F_contig14016:904..1102Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14016 905..1102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14016.2380.1prot_E-siliculosus-1a_F_contig14016.2380.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14016 905..1102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14016.2380.1

>prot_E-siliculosus-1a_F_contig14016.2380.1 ID=prot_E-siliculosus-1a_F_contig14016.2380.1|Name=mRNA_E-siliculosus-1a_F_contig14016.2380.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=66bp
VRRLVVSVVLANTSDSLLDGRCFRQTLRVASEIWRGFRSHCKVELAVLLD
GFLLKTLRAPSPQVRF
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mRNA from alignment at E-siliculosus-1a_F_contig14016:905..1102-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14016.2380.1 ID=mRNA_E-siliculosus-1a_F_contig14016.2380.1|Name=mRNA_E-siliculosus-1a_F_contig14016.2380.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=198bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14016:905..1102- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCGTCGACTAGTGGTCTCGGTGGTGCTGGCCAACACCTCGGACTCTCT
ACTGGACGGGAGGTGTTTCCGACAGACTCTGAGGGTAGCTTCCGAAATCT
GGAGGGGCTTTCGGAGCCACTGCAAGGTGGAGCTCGCGGTCCTGTTGGAC
GGCTTTCTCCTCAAGACTCTCCGCGCCCCGTCGCCTCAGGTTCGTTTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14016:905..1102-

>mRNA_E-siliculosus-1a_F_contig14016.2380.1 ID=mRNA_E-siliculosus-1a_F_contig14016.2380.1|Name=mRNA_E-siliculosus-1a_F_contig14016.2380.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14016:905..1102- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCGTCGACTAGTGGTCTCGGTGGTGCTGGCCAACACCTCGGACTCTCT
ACTGGACGGGAGGTGTTTCCGACAGACTCTGAGGGTAGCTTCCGAAATCT
GGAGGGGCTTTCGGAGCCACTGCAAGGTGGAGCTCGCGGTCCTGTTGGAC
GGCTTTCTCCTCAAGACTCTCCGCGCCCCGTCGCCTCAGGTTCGTTTCGT
GCGTCGACTAGTGGTCTCGGTGGTGCTGGCCAACACCTCGGACTCTCTAC
TGGACGGGAGGTGTTTCCGACAGACTCTGAGGGTAGCTTCCGAAATCTGG
AGGGGCTTTCGGAGCCACTGCAAGGTGGAGCTCGCGGTCCTGTTGGACGG
CTTTCTCCTCAAGACTCTCCGCGCCCCGTCGCCTCAGGTTCGTTTC
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