mRNA_E-siliculosus-1a_F_contig14011.2379.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14011.2379.1
Unique NamemRNA_E-siliculosus-1a_F_contig14011.2379.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: A0A7H9AQD8_9FLAO (UDP-2,3-diacylglucosamine diphosphatase n=1 Tax=Costertonia aggregata TaxID=343403 RepID=A0A7H9AQD8_9FLAO)

HSP 1 Score: 380 bits (976), Expect = 2.090e-132
Identity = 169/192 (88.02%), Postives = 185/192 (96.35%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            YKT+VP+GFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFH+PQQY  + TSFF+GHGDGLGPHDKGYKRMKKLFTNP+AKWFFRWMHPD GV++AQYFSVKNKLISGD+DA+FLGEDKEWLVQYAKRKLE+QHYDHF+FGHRHLPLEI+LN KSKYTNLGDWIKYYTYAVFDG +L L+K+
Sbjct:   62 YKTVVPKGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHRPQQYKINDTSFFIGHGDGLGPHDKGYKRMKKLFTNPVAKWFFRWMHPDWGVRLAQYFSVKNKLISGDEDAKFLGEDKEWLVQYAKRKLESQHYDHFVFGHRHLPLEIQLNEKSKYTNLGDWIKYYTYAVFDGEILSLEKF 253
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: A0A3Q9FKD8_9FLAO (UDP-2,3-diacylglucosamine diphosphatase n=2 Tax=unclassified Maribacter TaxID=2615042 RepID=A0A3Q9FKD8_9FLAO)

HSP 1 Score: 376 bits (966), Expect = 7.750e-131
Identity = 167/192 (86.98%), Postives = 183/192 (95.31%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            YKT+VP+GFTRTLGKLAEISD+GIPI+YFVGNHDLWMNGYFEEELNIPVFH+PQQYT +G SFF+GHGDGLGPHDKGYKRMKK+FTNP+AKWFFRW+HPD+GVK+AQYFSVKNKLISGD+DA+FLG DKEWLVQYAKRKLETQHYDHFIFGHRHLPLEI+LN KSKYTNLGDWI YYTYAVFDG  L L+ Y
Sbjct:   62 YKTVVPKGFTRTLGKLAEISDAGIPIFYFVGNHDLWMNGYFEEELNIPVFHRPQQYTINGISFFIGHGDGLGPHDKGYKRMKKVFTNPVAKWFFRWLHPDLGVKLAQYFSVKNKLISGDEDAKFLGADKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIDLNEKSKYTNLGDWINYYTYAVFDGDSLSLRAY 253
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: A0A2G5LDJ9_9FLAO (UDP-2,3-diacylglucosamine hydrolase n=5 Tax=Maribacter TaxID=252356 RepID=A0A2G5LDJ9_9FLAO)

HSP 1 Score: 375 bits (964), Expect = 1.180e-130
Identity = 168/192 (87.50%), Postives = 183/192 (95.31%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            YKT+VPRGFTRTLGKLAE+SDSGIPIYYFVGNHDLWMNGYFEEELNIPV+HKP+QY  +  SFF+GHGDGLGPHDKGYKRMKK+FTNPIAKWFFRW+HPD+GVKVAQYFSVKNKLISGDDDA+FLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEI+LN  SKYTN+GDWI Y+TYAVFDG  L+LKK+
Sbjct:   59 YKTVVPRGFTRTLGKLAELSDSGIPIYYFVGNHDLWMNGYFEEELNIPVYHKPKQYLINDVSFFIGHGDGLGPHDKGYKRMKKVFTNPIAKWFFRWLHPDLGVKVAQYFSVKNKLISGDDDAKFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIKLNETSKYTNIGDWINYFTYAVFDGHELELKKF 250
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: A0A5S3QNW5_9FLAO (UDP-2,3-diacylglucosamine diphosphatase n=2 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3QNW5_9FLAO)

HSP 1 Score: 375 bits (962), Expect = 2.640e-130
Identity = 167/192 (86.98%), Postives = 181/192 (94.27%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            YKT+VP+GF RTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQY  +G SFF+GHGDGLGPHDKGYKRMKK+FTNP++KW +RW+HPD GV++AQYFSVKNKLISGD+DA+FLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIEL GKSKYTNLGDWI YYTYAVFDG  L L+KY
Sbjct:   59 YKTVVPKGFIRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYEINGVSFFIGHGDGLGPHDKGYKRMKKVFTNPVSKWLYRWLHPDWGVRLAQYFSVKNKLISGDEDAQFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELEGKSKYTNLGDWINYYTYAVFDGEQLSLEKY 250
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: UPI00126A295D (UDP-2,3-diacylglucosamine diphosphatase n=1 Tax=Pelagihabitans pacificus TaxID=2696054 RepID=UPI00126A295D)

HSP 1 Score: 371 bits (953), Expect = 6.430e-129
Identity = 164/192 (85.42%), Postives = 183/192 (95.31%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            YKT+VP+GFTRTLGKLAE+SDSGIPI+YFVGNHDLWMNGYFEEELNIPVFHKPQQ+  SG SFF+GHGDGLGPHDKGYKRMKK+FTNPIAKW +RW+HPD GV++AQYFSVKNKLISGD+DA+FLGE++EWLVQYAKRKLET HYDHFIFGHRHLPLEI+LNGKS+YTNLGDWIKYYTYAVFDG  L L+K+
Sbjct:   62 YKTVVPKGFTRTLGKLAELSDSGIPIFYFVGNHDLWMNGYFEEELNIPVFHKPQQFEISGVSFFIGHGDGLGPHDKGYKRMKKVFTNPIAKWLYRWLHPDWGVRLAQYFSVKNKLISGDEDAQFLGEEREWLVQYAKRKLETHHYDHFIFGHRHLPLEIDLNGKSRYTNLGDWIKYYTYAVFDGKELALEKF 253
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: A0A5B7SZU8_9FLAO (UDP-2,3-diacylglucosamine diphosphatase n=2 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SZU8_9FLAO)

HSP 1 Score: 371 bits (952), Expect = 8.510e-129
Identity = 164/192 (85.42%), Postives = 182/192 (94.79%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            YKT++P+GFTRTLGKLAEI+DSGIPIYYFVGNHDLWMNGYFEEEL IPVFHKPQQY  +G +FF+GHGDGLGPHDKGYKRMKK+FTNPI+KWF+RW+HPD GV++AQYFSVKNKLISGD+DA+FLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEI+LNGKSKYTNLGDWI YYTYAV D  +L LKK+
Sbjct:   59 YKTVIPKGFTRTLGKLAEIADSGIPIYYFVGNHDLWMNGYFEEELGIPVFHKPQQYAINGVTFFIGHGDGLGPHDKGYKRMKKVFTNPISKWFYRWVHPDWGVRLAQYFSVKNKLISGDEDAKFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIDLNGKSKYTNLGDWINYYTYAVLDEGMLSLKKF 250
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: A0A223V4T8_9FLAO (UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Maribacter cobaltidurans TaxID=1178778 RepID=A0A223V4T8_9FLAO)

HSP 1 Score: 368 bits (945), Expect = 1.030e-127
Identity = 166/192 (86.46%), Postives = 180/192 (93.75%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            Y+T+VP+GFTRTLGKLAE+SDSGIPIYYFVGNHDLWM+GYFEEELNIPVFHKPQQY  +  SFFVGHGDGLGP DKGYKRMKKLFTNP+AKWFFRW+HPD+GVKVAQYFSVKNKLISGDDDA+FLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEI L+  SKYTN+GDWI Y+TYAVFDG  L L+KY
Sbjct:   62 YRTVVPKGFTRTLGKLAELSDSGIPIYYFVGNHDLWMDGYFEEELNIPVFHKPQQYLINNISFFVGHGDGLGPDDKGYKRMKKLFTNPVAKWFFRWLHPDLGVKVAQYFSVKNKLISGDDDAKFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEITLSESSKYTNIGDWINYFTYAVFDGQHLVLEKY 253
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: A0A2N0FUM7_9FLAO (UDP-2,3-diacylglucosamine hydrolase n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A2N0FUM7_9FLAO)

HSP 1 Score: 367 bits (943), Expect = 2.220e-127
Identity = 161/192 (83.85%), Postives = 182/192 (94.79%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            YKT+VP+GFTRTLGKLAEISDSGIPIY+FVGNHDLWMNGYFEEELNIPVFHKPQQ+  +G +FF+GHGDGLGP DKGYKRMKK+FTNP+A+W FRW+HPDIGV++AQYFSVKNKLISGDDDA++LG+D EWLVQYAKRKLET HYDHFIFGHRHLPLEI+LNGKSKYTNLGDW+ YYTYAVFDG  L+L+K+
Sbjct:   62 YKTVVPKGFTRTLGKLAEISDSGIPIYFFVGNHDLWMNGYFEEELNIPVFHKPQQFNINGATFFIGHGDGLGPDDKGYKRMKKVFTNPLAQWLFRWLHPDIGVRLAQYFSVKNKLISGDDDAKYLGDDNEWLVQYAKRKLETLHYDHFIFGHRHLPLEIDLNGKSKYTNLGDWVNYYTYAVFDGVQLRLQKF 253
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: UPI000640C967 (UDP-2,3-diacylglucosamine diphosphatase n=2 Tax=Maribacter TaxID=252356 RepID=UPI000640C967)

HSP 1 Score: 364 bits (935), Expect = 3.550e-126
Identity = 160/192 (83.33%), Postives = 180/192 (93.75%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            YKT+VP+GFTRT GKLAE+SD+GIPI+YFVGNHDLWMNGYFEEELNIPVFH+PQQY  +G SFF+GHGDGLGPHDKGYKRMKK+FTNP+AKWFFRW+HPD+GV++AQYFSVKNKLISGD+DA+FLGEDKEWLVQYAKRKLET+HYDHFIFGHRHLPLEI L+  SKYTN GDWI YYTYA FDG  L+LKK+
Sbjct:   62 YKTVVPKGFTRTFGKLAELSDAGIPIFYFVGNHDLWMNGYFEEELNIPVFHRPQQYLINGVSFFIGHGDGLGPHDKGYKRMKKVFTNPVAKWFFRWLHPDLGVRLAQYFSVKNKLISGDEDAKFLGEDKEWLVQYAKRKLETRHYDHFIFGHRHLPLEINLSQTSKYTNTGDWIHYYTYAEFDGQQLQLKKF 253
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Match: G0LAV5_ZOBGA (Metallophosphoesterase family n=15 Tax=Zobellia TaxID=112040 RepID=G0LAV5_ZOBGA)

HSP 1 Score: 362 bits (930), Expect = 2.280e-125
Identity = 161/192 (83.85%), Postives = 179/192 (93.23%), Query Frame = 1 
Query:    1 YKTMVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKPQQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGVKVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHRHLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKY 576
            YKT+VP+GFTRTLGKLAEISDSGIPIY+FVGNHDLWMNGYFEEELNIPVFHKPQQ+  +G SFFVGHGDGLGP DKGYKRMKK+FTNP+AKW FRW+HPDIGV++AQ+ SVKNKLISGDDDA+FLGEDKEWLVQYAKRKLET+HYDHF+FGHRHLP+EIE+   SKYTNLGDWI YYTYAVFDG  L L+K+
Sbjct:   62 YKTVVPKGFTRTLGKLAEISDSGIPIYFFVGNHDLWMNGYFEEELNIPVFHKPQQFNINGVSFFVGHGDGLGPDDKGYKRMKKVFTNPLAKWLFRWLHPDIGVRLAQHLSVKNKLISGDDDAQFLGEDKEWLVQYAKRKLETRHYDHFVFGHRHLPMEIEVGENSKYTNLGDWIHYYTYAVFDGEELSLEKF 253
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14011.2379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7H9AQD8_9FLAO2.090e-13288.02UDP-2,3-diacylglucosamine diphosphatase n=1 Tax=Co... [more]
A0A3Q9FKD8_9FLAO7.750e-13186.98UDP-2,3-diacylglucosamine diphosphatase n=2 Tax=un... [more]
A0A2G5LDJ9_9FLAO1.180e-13087.50UDP-2,3-diacylglucosamine hydrolase n=5 Tax=Mariba... [more]
A0A5S3QNW5_9FLAO2.640e-13086.98UDP-2,3-diacylglucosamine diphosphatase n=2 Tax=Ma... [more]
UPI00126A295D6.430e-12985.42UDP-2,3-diacylglucosamine diphosphatase n=1 Tax=Pe... [more]
A0A5B7SZU8_9FLAO8.510e-12985.42UDP-2,3-diacylglucosamine diphosphatase n=2 Tax=Ag... [more]
A0A223V4T8_9FLAO1.030e-12786.46UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Mariba... [more]
A0A2N0FUM7_9FLAO2.220e-12783.85UDP-2,3-diacylglucosamine hydrolase n=2 Tax=Flavob... [more]
UPI000640C9673.550e-12683.33UDP-2,3-diacylglucosamine diphosphatase n=2 Tax=Ma... [more]
G0LAV5_ZOBGA2.280e-12583.85Metallophosphoesterase family n=15 Tax=Zobellia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14011contigE-siliculosus-1a_F_contig14011:596..1180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size576
Model size585
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
BiGG ReactioniE2348C_1286.E2348C_0457
COG Functional cat.S
EC3.6.1.54
EggNOG OGs1HWZZ@117743,4NEF1@976,COG2908@1,COG2908@2
EggNOG free text desc.UDP-2,3-diacylglucosamine hydrolase
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0019897,GO:0019898,GO:0030145,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0046467,GO:0046493,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509
KEGG ModuleM00060
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ReactionR04549
KEGG koko:K03269
KEGG rclassRC00002
Preferred namelpxH
Seed eggNOG ortholog143224.JQMD01000002_gene2973
Seed ortholog evalue8.1e-97
Seed ortholog score359.8
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.2786863-CDS-E-siliculosus-1a_F_contig14011:595..11711622927918.2786863-CDS-E-siliculosus-1a_F_contig14011:595..1171Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14011 596..1171 -
1696318736.4464478-CDS-E-siliculosus-1a_F_contig14011:595..11711696318736.4464478-CDS-E-siliculosus-1a_F_contig14011:595..1171Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14011 596..1171 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.2914035-UTR-E-siliculosus-1a_F_contig14011:1171..11801622927918.2914035-UTR-E-siliculosus-1a_F_contig14011:1171..1180Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14011 1172..1180 -
1696318736.4632468-UTR-E-siliculosus-1a_F_contig14011:1171..11801696318736.4632468-UTR-E-siliculosus-1a_F_contig14011:1171..1180Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14011 1172..1180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14011.2379.1prot_E-siliculosus-1a_F_contig14011.2379.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14011 596..1171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14011.2379.1

>prot_E-siliculosus-1a_F_contig14011.2379.1 ID=prot_E-siliculosus-1a_F_contig14011.2379.1|Name=mRNA_E-siliculosus-1a_F_contig14011.2379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=192bp
MVPRGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVFHKP
QQYTFSGTSFFVGHGDGLGPHDKGYKRMKKLFTNPIAKWFFRWMHPDIGV
KVAQYFSVKNKLISGDDDAEFLGEDKEWLVQYAKRKLETQHYDHFIFGHR
HLPLEIELNGKSKYTNLGDWIKYYTYAVFDGTVLKLKKYSS*
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mRNA from alignment at E-siliculosus-1a_F_contig14011:596..1180-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14011.2379.1 ID=mRNA_E-siliculosus-1a_F_contig14011.2379.1|Name=mRNA_E-siliculosus-1a_F_contig14011.2379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=585bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14011:596..1180- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TATAAAACTATGGTGCCTAGAGGGTTTACAAGAACTTTAGGAAAATTAGC
TGAAATATCAGACTCTGGCATTCCTATTTATTATTTTGTAGGCAACCATG
ATTTATGGATGAATGGTTATTTTGAAGAAGAACTCAACATTCCCGTCTTT
CATAAACCACAACAATATACTTTTAGTGGTACTTCTTTTTTCGTGGGGCA
TGGCGATGGCTTAGGTCCTCATGACAAAGGCTATAAACGAATGAAAAAGC
TCTTCACTAACCCCATTGCAAAATGGTTCTTTCGTTGGATGCACCCAGAT
ATTGGGGTAAAAGTAGCTCAGTATTTTTCCGTAAAGAATAAATTAATTTC
CGGAGATGACGATGCGGAATTTCTTGGAGAAGACAAAGAATGGTTGGTAC
AGTATGCCAAACGAAAGTTAGAAACACAACATTATGATCACTTCATTTTT
GGTCACCGCCACCTTCCTTTAGAAATTGAATTAAACGGAAAATCAAAGTA
TACCAATTTAGGAGATTGGATAAAGTACTATACCTATGCTGTTTTTGATG
GGACCGTATTAAAACTAAAAAAGTATAGTTCTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14011:596..1180-

>mRNA_E-siliculosus-1a_F_contig14011.2379.1 ID=mRNA_E-siliculosus-1a_F_contig14011.2379.1|Name=mRNA_E-siliculosus-1a_F_contig14011.2379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14011:596..1180- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGCCTAGAGGGTTTACAAGAACTTTAGGAAAATTAGCTGAAATATC
AGACTCTGGCATTCCTATTTATTATTTTGTAGGCAACCATGATTTATGGA
TGAATGGTTATTTTGAAGAAGAACTCAACATTCCCGTCTTTCATAAACCA
CAACAATATACTTTTAGTGGTACTTCTTTTTTCGTGGGGCATGGCGATGG
CTTAGGTCCTCATGACAAAGGCTATAAACGAATGAAAAAGCTCTTCACTA
ACCCCATTGCAAAATGGTTCTTTCGTTGGATGCACCCAGATATTGGGGTA
AAAGTAGCTCAGTATTTTTCCGTAAAGAATAAATTAATTTCCGGAGATGA
CGATGCGGAATTTCTTGGAGAAGACAAAGAATGGTTGGTACAGTATGCCA
AACGAAAGTTAGAAACACAACATTATGATCACTTCATTTTTGGTCACCGC
CACCTTCCTTTAGAAATTGAATTAAACGGAAAATCAAAGTATACCAATTT
AGGAGATTGGATAAAGTACTATACCTATGCTGTTTTTGATGGGACCGTAT
TAAAACTAAAAAAGTATAGTTCTTAAATGGTGCCTAGAGGGTTTACAAGA
ACTTTAGGAAAATTAGCTGAAATATCAGACTCTGGCATTCCTATTTATTA
TTTTGTAGGCAACCATGATTTATGGATGAATGGTTATTTTGAAGAAGAAC
TCAACATTCCCGTCTTTCATAAACCACAACAATATACTTTTAGTGGTACT
TCTTTTTTCGTGGGGCATGGCGATGGCTTAGGTCCTCATGACAAAGGCTA
TAAACGAATGAAAAAGCTCTTCACTAACCCCATTGCAAAATGGTTCTTTC
GTTGGATGCACCCAGATATTGGGGTAAAAGTAGCTCAGTATTTTTCCGTA
AAGAATAAATTAATTTCCGGAGATGACGATGCGGAATTTCTTGGAGAAGA
CAAAGAATGGTTGGTACAGTATGCCAAACGAAAGTTAGAAACACAACATT
ATGATCACTTCATTTTTGGTCACCGCCACCTTCCTTTAGAAATTGAATTA
AACGGAAAATCAAAGTATACCAATTTAGGAGATTGGATAAAGTACTATAC
CTATGCTGTTTTTGATGGGACCGTATTAAAACTAAAAAAGTATAGTTCTT
AA
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