Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10278.237.1 vs. uniprot
Match: D7G724_ECTSI (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G724_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 7.810e-12 Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 2 Query: 107 AGSSRFGGSVGRGGVTVAPRGGQGRQELGQAAAPGALDHVHAAPGVE 247
AG+SRFG SVGRGGV V P+GGQGRQE+GQAAAPGAL VHA P VE
Sbjct: 49 AGTSRFGESVGRGGVAVVPQGGQGRQEMGQAAAPGALHSVHALPEVE 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 219 |
| Model size | 249 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927530.7719157-UTR-E-siliculosus-1a_F_contig10278:1374..1404 | 1622927530.7719157-UTR-E-siliculosus-1a_F_contig10278:1374..1404 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10278 1375..1404 - |
| 1696318570.7263258-UTR-E-siliculosus-1a_F_contig10278:1374..1404 | 1696318570.7263258-UTR-E-siliculosus-1a_F_contig10278:1374..1404 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10278 1375..1404 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10278.237.1 >prot_E-siliculosus-1a_F_contig10278.237.1 ID=prot_E-siliculosus-1a_F_contig10278.237.1|Name=mRNA_E-siliculosus-1a_F_contig10278.237.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp
GRSPPGLRRPRPSRRDNPALPPTRTERRRPSAGTRCRIFSVRRKRRPWRC
NCRPSRWSRSTRAGSGGCPRRP* back to topmRNA from alignment at E-siliculosus-1a_F_contig10278:1375..2405- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10278.237.1 ID=mRNA_E-siliculosus-1a_F_contig10278.237.1|Name=mRNA_E-siliculosus-1a_F_contig10278.237.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1031bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10278:1375..2405- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGCGATCACCACCCGGCTTAAGAAGGCCTCGGCCAAGTCGACGAGACAA
TCCTGCACTACCACCGACGAGGACCGAGAGGAGGAGGCCATCAGCTGGCA
CCCGTTGCAGGTGCTGCATGCTGGTTCTTTGTTTTTGTCTTTGCGTGGTT
CAGGTATCGCTGTTGTTGTTGTTGATTCACGTAACCGTTGTTGCTGGCCT
TGCTGTTGTCGATTGCTGTTGTGGTCATCGTCTGTTGCCGTCGTTGTCTT
TGTTGTTTTGGTTGTGTTGTGCTCTCGTTGTTGTTGTTGTTGTTGATGTC
GTCGTTAGGTGTTACATGTACATCCCGACTGGCTTTTCTCGGTGCCCTTT
TCCTCCCCCCGGGCGAGCCCAAAGCTGACCCCTGCCATTTGTCGCGTGTG
GTGCTCACCTGGCTACTGTTGTTCTCGCCTTGTATCGGTTAGCCGGCGGA
TCGTGTGCTTCCCTTAAGTTGTTGCGGTGTGTTGTGTTTTGTGGGTTGTT
TGTTCTTGGTAGCAACGAACAGTCAAGTTGAACGTGCACATCCTGTGGAT
GCGCGCCCTGAACAACCTTTGGGGGGGGGGGGGGGGAGGTCGGTGTTTCG
ATGCCCGTTTGGTAGAGGTGGGGTCTAAGGCCGTTGTGACGGGCAAAGAC
TTCGATCCAGACACGGGTGAGATGAAGGACAAGCTCGACGCCTCCAAGCT
CGTGACGTGCACCTTCCTGCCGGCTTTTGCTTGAAAGCTCGTCGCCTCTC
CTCGTCGCTGACCAATCATGGAACGCACGAACTACAACTCTTCTCTATCT
GTTGTCGTTCCCTCAGTCAAGTACTCTTCTTCTCTTTTCTGCCATTCACG
TACGCATGTGTTCCTATCTCTTGTTTTTTTTTTCTGTCGTAGGATCTTCT
CGGTTCGGAGGAAGCGTCGGCCGTGGCGGTGTAACTGTCGCCCCTCGAGG
TGGTCAAGGTCGACAAGAGCTGGGTCAGGCGGCTGCCCCCGGCGCCCTTG
ATCACGTCCACGCTGCACCAGGAGTCGAGCC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10278:1375..2405- >mRNA_E-siliculosus-1a_F_contig10278.237.1 ID=mRNA_E-siliculosus-1a_F_contig10278.237.1|Name=mRNA_E-siliculosus-1a_F_contig10278.237.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10278:1375..2405- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGCGATCACCACCCGGCTTAAGAAGGCCTCGGCCAAGTCGACGAGACAA
TCCTGCACTACCACCGACGAGGACCGAGAGGAGGAGGCCATCAGCTGGCA
CCCGTTGCAGGGGCGATCACCACCCGGCTTAAGAAGGCCTCGGCCAAGTC
GACGAGACAATCCTGCACTACCACCGACGAGGACCGAGAGGAGGAGGCCA
TCAGCTGGCACCCGTTGCAGGATCTTCTCGGTTCGGAGGAAGCGTCGGCC
GTGGCGGTGTAACTGTCGCCCCTCGAGGTGGTCAAGGTCGACAAGAGCTG
GGTCAGGCGGCTGCCCCCGGCGCCCTTGAGATCTTCTCGGTTCGGAGGAA
GCGTCGGCCGTGGCGGTGTAACTGTCGCCCCTCGAGGTGGTCAAGGTCGA
CAAGAGCTGGGTCAGGCGGCTGCCCCCGGCGCCCTTGA back to top
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