prot_E-siliculosus-1a_F_contig10272.236.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig10272.236.1
Unique Nameprot_E-siliculosus-1a_F_contig10272.236.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length175
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: D7FS46_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS46_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.250e-64
Identity = 145/174 (83.33%), Postives = 146/174 (83.91%), Query Frame = 0 
Query:    1 ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVLGWGAAADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 174
            A  + GSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTC EAAVSFVLGWGAAADPNADGDDG XXXXXXXXXXX                      XXXXXXXXXXXXXXXXXXXXXXXX PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct:   16 AARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCLEAAVSFVLGWGAAADPNADGDDGNXXXXXXXXXXXDSTKGSKAEAGKKLFGRGDGSGXXXXXXXXXXXXXXXXXXXXXXXXEPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 189
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BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: A0A6H5JK77_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK77_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.840e-54
Identity = 165/174 (94.83%), Postives = 167/174 (95.98%), Query Frame = 0 
Query:    1 ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVLGWGAAADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 174
            A  + GSDKPLDADSLLPLLVHSLAHANLPRVHEAL+FLRNFQGAGWGGEQEYYVTC EAAVSFVL WGA ADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct:  955 AARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALSFLRNFQGAGWGGEQEYYVTCLEAAVSFVLDWGAVADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 1127
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BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: A0A7S2GUB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUB1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.820e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0 
Query:    8 DKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVL 66
            DKPLDAD + P+LV ++ H+ LP +H  + FLRNF  A   GE  Y++TC EAAVSFV+
Sbjct:  135 DKPLDADVMFPILVLAIVHSKLPHMHSYIFFLRNFAIADTTGEAAYFLTCCEAAVSFVM 193
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS46_ECTSI1.250e-6483.33VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JK77_9PHAE1.840e-5494.83VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2GUB1_9STRA2.820e-1154.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003123VPS9 domainPFAMPF02204VPS9coord: 5..65
e-value: 1.9E-9
score: 37.6
IPR003123VPS9 domainPROSITEPS51205VPS9coord: 1..74
score: 18.372
IPR037191VPS9 domain superfamilyGENE3D1.20.1050.80coord: 1..87
e-value: 5.7E-11
score: 44.4
IPR037191VPS9 domain superfamilySUPERFAMILY109993VPS9 domaincoord: 7..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10272contigE-siliculosus-1a_F_contig10272:1198..2061 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10272.236.1mRNA_E-siliculosus-1a_F_contig10272.236.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig10272 1198..2061 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig10272.236.1 ID=prot_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGE
QEYYVTCFEAAVSFVLGWGAAADPNADGDDGNNNKKDDDNTTTDSAKGSK
AAAGKKLLGRGDDSGGSSSGNGASAAGRRAARRAGEEEEEPDKGREALVR
LGIFLEKHEVQEDTVDVLSSAGWL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037191VPS9_dom_sf
IPR003123VPS9