mRNA_E-siliculosus-1a_F_contig13993.2352.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13993.2352.1
Unique NamemRNA_E-siliculosus-1a_F_contig13993.2352.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13993.2352.1 vs. uniprot
Match: D8LGI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI8_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 4.150e-39
Identity = 79/100 (79.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 MDMQMSIQHDRIKSAKVEQLQKKKQKLEKDEEKFRGLANVAWMAFP--------------------ERKRNAQRKINEVDAELLALTNVNVHRSFAISDS 240
            MDMQMSIQHDRIKSAKVEQLQKKKQKLEKDEEKFRGLANVAWMAFP                    ERKRNAQRKINEVDAELLALTNVNVHR+FAISDS
Sbjct:   57 MDMQMSIQHDRIKSAKVEQLQKKKQKLEKDEEKFRGLANVAWMAFPVTAIVFVCTXXXXXLPELMKERKRNAQRKINEVDAELLALTNVNVHRNFAISDS 156
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BLAST of mRNA_E-siliculosus-1a_F_contig13993.2352.1 vs. uniprot
Match: A0A6H5JSH8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSH8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 8.500e-35
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MDMQMSIQHDRIKSAKVEQLQKKKQKLEKDEEKFRGLANVAWMAFP-------ERKRNAQRKINEVDAELLALTNVNVHRSFAISDS 240
            MDMQMSIQHDRIKSAKVEQLQ+KK+KL+KDE+KFRGLANVAW+AFP       ER+RNAQRKINEVDAELL LTNVNVHRSFAISDS
Sbjct: 1650 MDMQMSIQHDRIKSAKVEQLQRKKEKLQKDEDKFRGLANVAWIAFPVTAIVAEERERNAQRKINEVDAELLTLTNVNVHRSFAISDS 1736
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BLAST of mRNA_E-siliculosus-1a_F_contig13993.2352.1 vs. uniprot
Match: D7FX07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX07_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.580e-28
Identity = 64/99 (64.65%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    4 DMQMSIQHDRIKSAKVEQLQKKKQKLEKDEEKFRGLANVAWMAFP--------------------ERKRNAQRKINEVDAELLALTNVNVHRSFAISDS 240
            DM MS+ HDRIKS KVEQL+KK++KLEKDEEK+RGL N AW+AFP                    E+KRNAQRKIN VDAELLALTNVNV R+FAISDS
Sbjct:  142 DMHMSMHHDRIKSTKVEQLEKKRKKLEKDEEKYRGLVNAAWIAFPVTMVVYVLTCCSCCLPELMKEKKRNAQRKINVVDAELLALTNVNVRRNFAISDS 240
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BLAST of mRNA_E-siliculosus-1a_F_contig13993.2352.1 vs. uniprot
Match: A0A6H5KZI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.230e-23
Identity = 58/80 (72.50%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:    1 MDMQMSIQHDRIKSAKVEQLQKKKQKLEKDEEKFRGLANVAWMAFPERKRNAQRKINEVDAELLALTNVNVHRSFAISDS 240
            MDMQMSIQHDRIKSAKVEQLQ+KK+KL +                 ER+RNAQRKINEVDAELLALTNVNVHRSFAISDS
Sbjct:   20 MDMQMSIQHDRIKSAKVEQLQRKKEKLAE-----------------ERERNAQRKINEVDAELLALTNVNVHRSFAISDS 82
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13993.2352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGI8_ECTSI4.150e-3979.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSH8_9PHAE8.500e-3583.91Integrase catalytic domain-containing protein n=1 ... [more]
D7FX07_ECTSI1.580e-2864.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZI7_9PHAE1.230e-2372.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13993contigE-siliculosus-1a_F_contig13993:226..1195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size240
Model size240
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.3367817-CDS-E-siliculosus-1a_F_contig13993:225..3631622927910.3367817-CDS-E-siliculosus-1a_F_contig13993:225..363Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13993 226..363 +
1696318733.52844-CDS-E-siliculosus-1a_F_contig13993:225..3631696318733.52844-CDS-E-siliculosus-1a_F_contig13993:225..363Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13993 226..363 +
1622927910.3530765-CDS-E-siliculosus-1a_F_contig13993:1093..11951622927910.3530765-CDS-E-siliculosus-1a_F_contig13993:1093..1195Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13993 1094..1195 +
1696318733.5375645-CDS-E-siliculosus-1a_F_contig13993:1093..11951696318733.5375645-CDS-E-siliculosus-1a_F_contig13993:1093..1195Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13993 1094..1195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13993.2352.1prot_E-siliculosus-1a_F_contig13993.2352.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13993 226..1195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13993.2352.1

>prot_E-siliculosus-1a_F_contig13993.2352.1 ID=prot_E-siliculosus-1a_F_contig13993.2352.1|Name=mRNA_E-siliculosus-1a_F_contig13993.2352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=80bp
MDMQMSIQHDRIKSAKVEQLQKKKQKLEKDEEKFRGLANVAWMAFPERKR
NAQRKINEVDAELLALTNVNVHRSFAISDS
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mRNA from alignment at E-siliculosus-1a_F_contig13993:226..1195+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13993.2352.1 ID=mRNA_E-siliculosus-1a_F_contig13993.2352.1|Name=mRNA_E-siliculosus-1a_F_contig13993.2352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=970bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13993:226..1195+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACATGCAAATGTCCATCCAGCATGACCGCATCAAGAGCGCCAAGGT
CGAGCAGTTGCAGAAGAAGAAGCAGAAGCTGGAGAAAGACGAGGAGAAGT
TCCGGGGGCTCGCGAACGTGGCGTGGATGGCGTTCCCGGTGACGGCGATC
GTGTTCGTTTGCACCTGCTGTCAGTGCTGCCTTCCCGAGCTAATGAAGGT
GCCAAAGGGCGGTAGGCTGTTGTTTGTTTTGTGGACCAAAGGCTGGCAGG
ATACGCGAGTACGGGTTCACTCGCGCTTGAGTGAAGGTCCAAACTTGCTT
CTTTTTTAGCTTCGAACTCGAACCCCCTGAGGCAGAAAGTCTCGTGGCTT
GTGTCGTGCGTCAAGTTCGGGTGTTCACTCTCGACCAGCATCTACGACGT
CGTGGTCACAGCCTTGTCGATCGTTGTGTTCCGCTCCTTTGCTGTTGTTC
ATGTATGGTCCACGCGTTGACGAAATCATCCCTTTATCCGTTCCATCGTC
ACTTTCACAATCCTAAGATGTATCCAACTTTCATTCTGAACGAACTACTG
CTCAGTCTACCGCATGCTCTTCGTCGTCCGTCCTGACCTCCTACAGGTAG
TACCATATATGTTTGTGTATACAAAATAGTGCCTGCCGAAAACAACAGCG
AAAACGTATGTTGCCCAAGGCTGAGGTGGATCCATGCCGATAAGTATGAA
CCCGTTCGTCATGCTCCATGGGATCTGTATCTATCATCGGGAGAAGAGTC
ATTAGCTATGGAAGGAAGTAACCCTTCGTCGATCCGGCTGGTTGTGTGTG
AATATTTCATTTCGCTTCCTCACTAACTGTTCTTGTTTGTGCCTACGTAT
GTTGCTCGTCCTTGGCAGGAGAGGAAGAGGAACGCCCAGCGAAAGATCAA
CGAGGTGGACGCTGAGCTCCTGGCCCTCACCAACGTCAACGTCCACAGAA
GCTTCGCGATCTCCGACTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13993:226..1195+

>mRNA_E-siliculosus-1a_F_contig13993.2352.1 ID=mRNA_E-siliculosus-1a_F_contig13993.2352.1|Name=mRNA_E-siliculosus-1a_F_contig13993.2352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13993:226..1195+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACATGCAAATGTCCATCCAGCATGACCGCATCAAGAGCGCCAAGGT
CGAGCAGTTGCAGAAGAAGAAGCAGAAGCTGGAGAAAGACGAGGAGAAGT
TCCGGGGGCTCGCGAACGTGGCGTGGATGGCGTTCCCGATGGACATGCAA
ATGTCCATCCAGCATGACCGCATCAAGAGCGCCAAGGTCGAGCAGTTGCA
GAAGAAGAAGCAGAAGCTGGAGAAAGACGAGGAGAAGTTCCGGGGGCTCG
CGAACGTGGCGTGGATGGCGTTCCCGGAGAGGAAGAGGAACGCCCAGCGA
AAGATCAACGAGGTGGACGCTGAGCTCCTGGCCCTCACCAACGTCAACGT
CCACAGAAGCTTCGCGATCTCCGACTCGGAGAGGAAGAGGAACGCCCAGC
GAAAGATCAACGAGGTGGACGCTGAGCTCCTGGCCCTCACCAACGTCAAC
GTCCACAGAAGCTTCGCGATCTCCGACTCG
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