prot_E-siliculosus-1a_F_contig1027.233.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1027.233.1
Unique Nameprot_E-siliculosus-1a_F_contig1027.233.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length191
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1027.233.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 130..155
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 156..190
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 73..129
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..72
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..48
NoneNo IPR availableTMHMMTMhelixcoord: 135..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1027contigE-siliculosus-1a_F_contig1027:31269..31841 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1027.233.1mRNA_E-siliculosus-1a_F_contig1027.233.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1027 31269..32299 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1027.233.1 ID=prot_E-siliculosus-1a_F_contig1027.233.1|Name=mRNA_E-siliculosus-1a_F_contig1027.233.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=191bp
CACLSCSCAYTFRVVCTCVTWLRANSSLSSDLLCIRPRWCRGVQHTQQVV
LLLFSIQLRVSSVLFSLCAFIVDGTRRPQSTQGASQRTILSVPNATPTQP
AVRRSAVSARDASIVTTSPRLRGGKRQRALAWESVSCLYTTFFLLSVFFS
EFYIYGFVGVASRQRPLPDCCTIKSLFYYYFLSLNTTVCV*
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