Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1027.233.1 vs. uniprot
Match: D7G6T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T0_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 6.900e-10 Identity = 33/41 (80.49%), Postives = 33/41 (80.49%), Query Frame = -1 Query: 315 DNKKKVV*RHETDSQARALCLFPPRRRGDVVTIDASRAETA 437
DNKKKV R ETDSQA LCL PPRR GDVVTID SRAETA
Sbjct: 2 DNKKKVAYRRETDSQASTLCLSPPRRCGDVVTIDTSRAETA 42
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 573 |
| Model size | 1033 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927529.976459-CDS-E-siliculosus-1a_F_contig1027:31268..31841 | 1622927529.976459-CDS-E-siliculosus-1a_F_contig1027:31268..31841 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1027 31269..31841 + |
| 1696318570.2443883-CDS-E-siliculosus-1a_F_contig1027:31268..31841 | 1696318570.2443883-CDS-E-siliculosus-1a_F_contig1027:31268..31841 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1027 31269..31841 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927529.9885905-UTR-E-siliculosus-1a_F_contig1027:31841..32299 | 1622927529.9885905-UTR-E-siliculosus-1a_F_contig1027:31841..32299 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1027 31842..32299 + |
| 1696318570.2528267-UTR-E-siliculosus-1a_F_contig1027:31841..32299 | 1696318570.2528267-UTR-E-siliculosus-1a_F_contig1027:31841..32299 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1027 31842..32299 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1027.233.1 >prot_E-siliculosus-1a_F_contig1027.233.1 ID=prot_E-siliculosus-1a_F_contig1027.233.1|Name=mRNA_E-siliculosus-1a_F_contig1027.233.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=191bp
CACLSCSCAYTFRVVCTCVTWLRANSSLSSDLLCIRPRWCRGVQHTQQVV
LLLFSIQLRVSSVLFSLCAFIVDGTRRPQSTQGASQRTILSVPNATPTQP
AVRRSAVSARDASIVTTSPRLRGGKRQRALAWESVSCLYTTFFLLSVFFS
EFYIYGFVGVASRQRPLPDCCTIKSLFYYYFLSLNTTVCV* back to topmRNA from alignment at E-siliculosus-1a_F_contig1027:31269..32299+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1027.233.1 ID=mRNA_E-siliculosus-1a_F_contig1027.233.1|Name=mRNA_E-siliculosus-1a_F_contig1027.233.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1031bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1027:31269..32299+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGCCTGTTTGTCGTGTTCTTGTGCGTATACGTTCCGAGTGGTGTGTAC
GTGTGTGACGTGGCTGCGTGCGAATTCTTCTTTGTCTTCCGATCTGCTAT
GCATACGTCCTCGCTGGTGTCGGGGTGTCCAACACACACAACAGGTGGTG
TTGTTGTTGTTCTCGATACAGCTGCGTGTGTCATCTGTGTTATTTTCTCT
TTGTGCCTTCATCGTTGATGGCACAAGGCGGCCGCAGTCAACACAAGGTG
CGTCACAGCGTACCATACTCTCAGTCCCAAACGCCACACCTACCCAACCC
GCAGTGCGGCGCAGTGCCGTTTCGGCGCGAGATGCGTCGATTGTCACCAC
GTCACCACGTCTGCGAGGGGGGAAAAGGCAAAGAGCTCTGGCCTGGGAGT
CTGTTTCATGTCTCTACACGACCTTCTTCTTATTGTCCGTCTTTTTTTCC
GAATTTTATATTTACGGTTTTGTAGGAGTCGCCTCCCGCCAAAGGCCACT
GCCTGACTGCTGCACGATTAAAAGTCTTTTTTACTATTATTTCCTTTCTT
TGAACACTACAGTGTGTGTGTAGGGATTTTGCATTTTTGTATGAATAGCG
TCTCTCGCTTGGCCGTTCTTGCTGTAAATTAACGGATTCTGCCGGGGTTT
TGGACGAAACTCGTCGTGTCGTTGTTGCTGCCTGACGTTGGGAATCGAGC
GGCCAACCACGTGTTGCTTGCTCGTTCTTGTAGGGAGAAAGATACATCGC
TGCGCGTGATGGGGGTTAGTTGGACTTTTTTCCACGAGGAGGATGATCCC
CGCTGCGGACAGCCAGCAGCGCGGTACCCGCGTTAACTTTCGGTGTCTTT
GTCGCAGTAGTTTGTTGTTGGGTGTATATCTATCGTGTCTGCTGTTTTGT
TCGCTTGCTTGGGAGGAGCCAAAGCAATTCGTACGACATGCAAGATGAAC
AAGAAATGTTTGGAGGGAGAACCCAAGCACGCGTATGATGTTCATGTGAT
CGAACTACTTTTTTTGTGTAGTGTAGGTGGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1027:31269..32299+ >mRNA_E-siliculosus-1a_F_contig1027.233.1 ID=mRNA_E-siliculosus-1a_F_contig1027.233.1|Name=mRNA_E-siliculosus-1a_F_contig1027.233.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1146bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1027:31269..32299+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGCCTGTTTGTCGTGTTCTTGTGCGTATACGTTCCGAGTGGTGTGTAC
GTGTGTGACGTGGCTGCGTGCGAATTCTTCTTTGTCTTCCGATCTGCTAT
GCATACGTCCTCGCTGGTGTCGGGGTGTCCAACACACACAACAGGTGGTG
TTGTTGTTGTTCTCGATACAGCTGCGTGTGTCATCTGTGTTATTTTCTCT
TTGTGCCTTCATCGTTGATGGCACAAGGCGGCCGCAGTCAACACAAGGTG
CGTCACAGCGTACCATACTCTCAGTCCCAAACGCCACACCTACCCAACCC
GCAGTGCGGCGCAGTGCCGTTTCGGCGCGAGATGCGTCGATTGTCACCAC
GTCACCACGTCTGCGAGGGGGGAAAAGGCAAAGAGCTCTGGCCTGGGAGT
CTGTTTCATGTCTCTACACGACCTTCTTCTTATTGTCCGTCTTTTTTTCC
GAATTTTATATTTACGGTTTTGTAGGAGTCGCCTCCCGCCAAAGGCCACT
GCCTGACTGCTGCACGATTAAAAGTCTTTTTTACTATTATTTCCTTTCTT
TGAACACTACAGTGTGTGTGTAGTGTGCCTGTTTGTCGTGTTCTTGTGCG
TATACGTTCCGAGTGGTGTGTACGTGTGTGACGTGGCTGCGTGCGAATTC
TTCTTTGTCTTCCGATCTGCTATGCATACGTCCTCGCTGGTGTCGGGGTG
TCCAACACACACAACAGGTGGTGTTGTTGTTGTTCTCGATACAGCTGCGT
GTGTCATCTGTGTTATTTTCTCTTTGTGCCTTCATCGTTGATGGCACAAG
GCGGCCGCAGTCAACACAAGGTGCGTCACAGCGTACCATACTCTCAGTCC
CAAACGCCACACCTACCCAACCCGCAGTGCGGCGCAGTGCCGTTTCGGCG
CGAGATGCGTCGATTGTCACCACGTCACCACGTCTGCGAGGGGGGAAAAG
GCAAAGAGCTCTGGCCTGGGAGTCTGTTTCATGTCTCTACACGACCTTCT
TCTTATTGTCCGTCTTTTTTTCCGAATTTTATATTTACGGTTTTGTAGGA
GTCGCCTCCCGCCAAAGGCCACTGCCTGACTGCTGCACGATTAAAAGTCT
TTTTTACTATTATTTCCTTTCTTTGAACACTACAGTGTGTGTGTAG back to top
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