mRNA_E-siliculosus-1a_F_contig1027.234.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1027.234.1
Unique NamemRNA_E-siliculosus-1a_F_contig1027.234.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1027.234.1 vs. uniprot
Match: A0A6H5JGG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.030e-14
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:  103 MCGAMTVYVLLFCLSHLAADTMTVASWECTIIKLGD 210
            MCGAM VYVLLFC SHLAADT TV SWECTIIKLGD
Sbjct:    1 MCGAMAVYVLLFCFSHLAADTSTVGSWECTIIKLGD 36
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1027.234.1 vs. uniprot
Match: A0A6H5JR50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR50_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.250e-13
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = -2 
Query:   78 SPNLIIVHSQDATVIVSAAR*LKQNSNTYTVIAPHMPREPSPAR 209
            SPNLIIVHSQD TVIVSAAR LKQNSNTYT IAPHMP  P P +
Sbjct:   65 SPNLIIVHSQDPTVIVSAARLLKQNSNTYTAIAPHMP-SPEPRK 107
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1027.234.1 vs. uniprot
Match: A0A6H5JSA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.170e-9
Identity = 28/36 (77.78%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  100 GMCGAMTVYVLLFCLSHLAADTMTVASWECTIIKLG 207
            G CGAM VY LLFCLSHLAADT     WECTIIKLG
Sbjct:   16 GTCGAMAVYALLFCLSHLAADT-----WECTIIKLG 46
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1027.234.1 vs. uniprot
Match: A0A6H5JZV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZV7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.340e-9
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:  118 TVYVLLFCLSHLAADTMTVASWECTIIK 201
            TVYVLLFCLSHLAADTMTV SWECTII 
Sbjct:    7 TVYVLLFCLSHLAADTMTVGSWECTIIN 34
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1027.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGG7_9PHAE2.030e-1488.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR50_9PHAE1.250e-1381.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSA2_9PHAE1.170e-977.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZV7_9PHAE1.340e-992.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1027contigE-siliculosus-1a_F_contig1027:38256..38500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size210
Model size213
Exons2
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.9199698-CDS-E-siliculosus-1a_F_contig1027:38255..383541622927529.9199698-CDS-E-siliculosus-1a_F_contig1027:38255..38354Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1027 38256..38354 +
1696318570.2228913-CDS-E-siliculosus-1a_F_contig1027:38255..383541696318570.2228913-CDS-E-siliculosus-1a_F_contig1027:38255..38354Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1027 38256..38354 +
1622927529.9389799-CDS-E-siliculosus-1a_F_contig1027:38388..384991622927529.9389799-CDS-E-siliculosus-1a_F_contig1027:38388..38499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1027 38389..38499 +
1696318570.2335954-CDS-E-siliculosus-1a_F_contig1027:38388..384991696318570.2335954-CDS-E-siliculosus-1a_F_contig1027:38388..38499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1027 38389..38499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1027.234.1prot_E-siliculosus-1a_F_contig1027.234.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1027 38256..38499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1027.234.1

>prot_E-siliculosus-1a_F_contig1027.234.1 ID=prot_E-siliculosus-1a_F_contig1027.234.1|Name=mRNA_E-siliculosus-1a_F_contig1027.234.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=70bp
QPGITTAADTGFVDVRVHLKKSQENLRAGLGSLGMCGAMTVYVLLFCLSH
LAADTMTVASWECTIIKLGD
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1027:38256..38500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1027.234.1 ID=mRNA_E-siliculosus-1a_F_contig1027.234.1|Name=mRNA_E-siliculosus-1a_F_contig1027.234.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=245bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1027:38256..38500+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAACCTGGAATTACTACTGCTGCGGATACTGGATTCGTGGACGTACGTGT
TCACCTGAAGAAAAGCCAAGAGAACCTGCGAGCAGGACTTGGCTCCCTAG
TGAAATCCAAGTGGCTTCCTGGGTTCGGACGAGGGCATGTGTGGAGCTAT
GACAGTGTATGTGTTACTATTTTGTTTGAGTCATCTAGCTGCTGACACGA
TGACTGTTGCATCTTGGGAGTGTACGATTATCAAATTGGGAGATG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1027:38256..38500+

>mRNA_E-siliculosus-1a_F_contig1027.234.1 ID=mRNA_E-siliculosus-1a_F_contig1027.234.1|Name=mRNA_E-siliculosus-1a_F_contig1027.234.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=420bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1027:38256..38500+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAACCTGGAATTACTACTGCTGCGGATACTGGATTCGTGGACGTACGTGT
TCACCTGAAGAAAAGCCAAGAGAACCTGCGAGCAGGACTTGGCTCCCTAC
AACCTGGAATTACTACTGCTGCGGATACTGGATTCGTGGACGTACGTGTT
CACCTGAAGAAAAGCCAAGAGAACCTGCGAGCAGGACTTGGCTCCCTAGG
CATGTGTGGAGCTATGACAGTGTATGTGTTACTATTTTGTTTGAGTCATC
TAGCTGCTGACACGATGACTGTTGCATCTTGGGAGTGTACGATTATCAAA
TTGGGAGATGGCATGTGTGGAGCTATGACAGTGTATGTGTTACTATTTTG
TTTGAGTCATCTAGCTGCTGACACGATGACTGTTGCATCTTGGGAGTGTA
CGATTATCAAATTGGGAGAT
back to top