prot_E-siliculosus-1a_F_contig1389.2305.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1389.2305.1
Unique Nameprot_E-siliculosus-1a_F_contig1389.2305.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length112
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1389.2305.1 vs. uniprot
Match: A0A6H5KWC2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWC2_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 2.300e-51
Identity = 101/112 (90.18%), Postives = 103/112 (91.96%), Query Frame = 0 
Query:    1 MMAKIVRSVLAAAVVIALICGPGDAFVVGAGRGLAPGRPVRTTTSAFAPACCSSPPRGRPAGGMAFRASLSSTPAFRGRNRKAISTRRLGFREGEGGMNEGGHNGGAVGGKE 112
            MMAKIVRSVLA  VVIALICGPGDAFVVGAGRGLAPGRP+ TTTSAFAPACCSSP RGRPAGGMAFRASLSSTPAFRGRNRKA+STRRLG REGE GMNEG H G AVGGKE
Sbjct:    1 MMAKIVRSVLA--VVIALICGPGDAFVVGAGRGLAPGRPLHTTTSAFAPACCSSPRRGRPAGGMAFRASLSSTPAFRGRNRKAMSTRRLGCREGERGMNEGVHYGDAVGGKE 110
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1389.2305.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWC2_9PHAE2.300e-5190.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..112
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.841
NoneNo IPR availableTMHMMTMhelixcoord: 9..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1389contigE-siliculosus-1a_F_contig1389:31983..33168 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1389.2305.1mRNA_E-siliculosus-1a_F_contig1389.2305.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1389 31860..33168 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1389.2305.1 ID=prot_E-siliculosus-1a_F_contig1389.2305.1|Name=mRNA_E-siliculosus-1a_F_contig1389.2305.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=112bp
MMAKIVRSVLAAAVVIALICGPGDAFVVGAGRGLAPGRPVRTTTSAFAPA
CCSSPPRGRPAGGMAFRASLSSTPAFRGRNRKAISTRRLGFREGEGGMNE
GGHNGGAVGGKE
back to top