mRNA_E-siliculosus-1a_F_contig1389.2305.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1389.2305.1
Unique NamemRNA_E-siliculosus-1a_F_contig1389.2305.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1389.2305.1 vs. uniprot
Match: A0A6H5KWC2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWC2_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.940e-51
Identity = 101/112 (90.18%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:  124 MMAKIVRSVLAAAVVIALICGPGDAFVVGAGRGLAPGRPVRTTTSAFAPACCSSPPRGRPAGGMAFRASLSSTPAFRGRNRKAISTRRLGFREGEGGMNEGGHNGGAVGGKE 459
            MMAKIVRSVLA  VVIALICGPGDAFVVGAGRGLAPGRP+ TTTSAFAPACCSSP RGRPAGGMAFRASLSSTPAFRGRNRKA+STRRLG REGE GMNEG H G AVGGKE
Sbjct:    1 MMAKIVRSVLA--VVIALICGPGDAFVVGAGRGLAPGRPLHTTTSAFAPACCSSPRRGRPAGGMAFRASLSSTPAFRGRNRKAMSTRRLGCREGERGMNEGVHYGDAVGGKE 110
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1389.2305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWC2_9PHAE2.940e-5190.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1389contigE-siliculosus-1a_F_contig1389:31860..33168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size336
Model size459
Exons2
Hectar predicted targeting categorychloroplast
Ec32 orthologEc-00_004280.1
Ec32 ortholog descriptionexpressed unknown protein
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1389.2305.1prot_E-siliculosus-1a_F_contig1389.2305.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1389 31983..33168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927900.7098732-UTR-E-siliculosus-1a_F_contig1389:31859..319821622927900.7098732-UTR-E-siliculosus-1a_F_contig1389:31859..31982Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1389 31860..31982 +
1696318729.7413657-UTR-E-siliculosus-1a_F_contig1389:31859..319821696318729.7413657-UTR-E-siliculosus-1a_F_contig1389:31859..31982Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1389 31860..31982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927900.727162-CDS-E-siliculosus-1a_F_contig1389:31982..321171622927900.727162-CDS-E-siliculosus-1a_F_contig1389:31982..32117Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1389 31983..32117 +
1696318729.751824-CDS-E-siliculosus-1a_F_contig1389:31982..321171696318729.751824-CDS-E-siliculosus-1a_F_contig1389:31982..32117Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1389 31983..32117 +
1622927900.7545943-CDS-E-siliculosus-1a_F_contig1389:32967..331681622927900.7545943-CDS-E-siliculosus-1a_F_contig1389:32967..33168Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1389 32968..33168 +
1696318729.761035-CDS-E-siliculosus-1a_F_contig1389:32967..331681696318729.761035-CDS-E-siliculosus-1a_F_contig1389:32967..33168Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1389 32968..33168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1389.2305.1

>prot_E-siliculosus-1a_F_contig1389.2305.1 ID=prot_E-siliculosus-1a_F_contig1389.2305.1|Name=mRNA_E-siliculosus-1a_F_contig1389.2305.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=112bp
MMAKIVRSVLAAAVVIALICGPGDAFVVGAGRGLAPGRPVRTTTSAFAPA
CCSSPPRGRPAGGMAFRASLSSTPAFRGRNRKAISTRRLGFREGEGGMNE
GGHNGGAVGGKE
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mRNA from alignment at E-siliculosus-1a_F_contig1389:31860..33168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1389.2305.1 ID=mRNA_E-siliculosus-1a_F_contig1389.2305.1|Name=mRNA_E-siliculosus-1a_F_contig1389.2305.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1309bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1389:31860..33168+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGGCAGGCAGGAACCGAGAGAGCGCGCCGTTGCCGCTTTTCTCGCCTA
GTCTCGTGGCAGATATCGATTCTATCTTGGCTTGAGCTGTGTCGGACTGC
TTGCGGGCCTGTCTTCCGGCCAGATGATGGCGAAGATTGTACGCTCTGTC
CTTGCGGCAGCGGTCGTGATTGCGTTGATCTGCGGTCCAGGGGATGCGTT
TGTTGTAGGCGCGGGCCGGGGGCTGGCTCCAGGGCGACCAGTGCGTACGA
CCACGTCGGTAAGTGTGCTCTCAAAGATTGTTTCCAGGACATGTAGGGTG
GATGCAGTCCGTCGCTTGCATGTGTCGTACATATTCTCTTGTGGGTTGGC
TGTCTCTCTCTCTGTCTTGTTGCAACGTGTCGGGCCGTGCGTGCGGCGCA
CCTGATAGGTTGTAGTTTGGCTCGCATCATGTGTTGCATGTTCCAATCCC
TTAACGTCCGGCTTCCAGCCGGCTGTGTGCTCTCCACATGTTGACAGGGG
GGAACCCACTCACTCACATCTTGGGATCGCCGCCAATGTTGGGTAGCAAT
TTATGTGTTGCGGCCGTTGCTGCTCTCTCATGAGCATGTAGGGAACATCT
TGCAGTTTGAGGGGGGGCACTGTTGGTCGCAACTGCTGTGGAATGAATGT
CTAACAGCCGCAGGGGGCATTTACATCTGTGCTGACCCACATTCAACTGC
AACGCCTCTTTGGTATCCAGTGTTTTCTTCGCAAACCGCATGCCGGTTTT
GAAGCTTCGACGACACACCCGAACACTGGTGTAGACGAAAGCGCCAGTTC
ATAGACAGGAGTACTGCTGTTGTATCGCAATGGGTGCGACTGATTTTTCG
CAGTTACCCCATCGCATGTGGCAATCTAGTCTAGATCCATCATCCACATT
CATACCCATTCCGAGCTCGCCGGCGTACGTCGGCAAGCGGATGCCTGCAC
CACAGCAGGGGCGGTGCTATTCTACGAAGGTGCTGCACTGCATGGGGTGC
TGTTCGCATGCATACTTGTAGGCTCCAAAGTACGAGCAAAGTAACAACAG
ACCCCAAGGAAACCCTACTGATGTGGTACAATCCCCTGCCCCTCTCGTCC
TCCGCCAGGCATTCGCCCCCGCTTGCTGTAGTAGCCCCCCAAGAGGTCGA
CCTGCGGGCGGAATGGCGTTCCGGGCCTCCCTATCAAGCACGCCGGCATT
CCGCGGTAGGAACCGGAAAGCTATTTCGACGCGGAGGTTGGGCTTCCGGG
AAGGTGAAGGGGGGATGAACGAGGGAGGGCACAACGGGGGCGCCGTCGGT
GGAAAGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1389:31860..33168+

>mRNA_E-siliculosus-1a_F_contig1389.2305.1 ID=mRNA_E-siliculosus-1a_F_contig1389.2305.1|Name=mRNA_E-siliculosus-1a_F_contig1389.2305.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1389:31860..33168+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGGCGAAGATTGTACGCTCTGTCCTTGCGGCAGCGGTCGTGATTGC
GTTGATCTGCGGTCCAGGGGATGCGTTTGTTGTAGGCGCGGGCCGGGGGC
TGGCTCCAGGGCGACCAGTGCGTACGACCACGTCGATGATGGCGAAGATT
GTACGCTCTGTCCTTGCGGCAGCGGTCGTGATTGCGTTGATCTGCGGTCC
AGGGGATGCGTTTGTTGTAGGCGCGGGCCGGGGGCTGGCTCCAGGGCGAC
CAGTGCGTACGACCACGTCGGCATTCGCCCCCGCTTGCTGTAGTAGCCCC
CCAAGAGGTCGACCTGCGGGCGGAATGGCGTTCCGGGCCTCCCTATCAAG
CACGCCGGCATTCCGCGGTAGGAACCGGAAAGCTATTTCGACGCGGAGGT
TGGGCTTCCGGGAAGGTGAAGGGGGGATGAACGAGGGAGGGCACAACGGG
GGCGCCGTCGGTGGAAAGGAGGCATTCGCCCCCGCTTGCTGTAGTAGCCC
CCCAAGAGGTCGACCTGCGGGCGGAATGGCGTTCCGGGCCTCCCTATCAA
GCACGCCGGCATTCCGCGGTAGGAACCGGAAAGCTATTTCGACGCGGAGG
TTGGGCTTCCGGGAAGGTGAAGGGGGGATGAACGAGGGAGGGCACAACGG
GGGCGCCGTCGGTGGAAAGGAG
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