mRNA_E-siliculosus-1a_F_contig10269.230.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10269.230.1 vs. uniprot
Match: D8LHG6_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG6_ECTSI) HSP 1 Score: 838 bits (2165), Expect = 9.310e-293 Identity = 587/651 (90.17%), Postives = 595/651 (91.40%), Query Frame = 1 Query: 13 GAWRSRARTWASMGDLAEADVAPDVTGGGGA--EGTAGGSKGAGVRWASRRRSSTSECSTADGSAVAIEDEDGGRIGGGSQRHRGSMRSCLSRDSLAAASDGGDTDLADRTCSEASDLEENQENIVFHSNSSILFREGVCRTIRKRVGPPRVPSLPPSRHRRTLAAVKNLNSFHDATALAATQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAVAGLAVAGKFLGLNKGMVDKAAQEMGKKLALWPGAAGMGGAAMTSVSSLGSLAAGAITGVTSNSXXXXXXXXXXXXXXXNCNPHTPLGSPRSASASVSAALTDSPVRWDPSSQHGSTVSTDLGLGEISGAESEACVNRGRQSLDAKAAXXXXXXXXXXXVXXXXLSAAVGGGLKRVSSSRTALIQLSDLELAEPCGKRIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------VLPPRPDDEYELLFTTRVIGLQFRELLDGTGVCVAGSEGYVGPAPTTGVPGERLCPDTGDVLESYNGVSARGKPADVVSQELAQCGRPLRLGFRSTRAERELLAEEKEGEMETAWVGGSRPRAPLSEDGSGXXXXXXXXXXGGAAAVSSGASSCRDEAFAGPSQHPWAVSS 1941
GAWRSRARTWASMGDLAEADVAPDVTGGGG +GTAGGSKGAGVRWASRRRSSTSECSTAD S VAIED+DGGRIGGGSQR RGSMRSCLSRDSLAAASDGGDTDLADRTCSEASDLEENQENIVFHSN S FREGVCRTIRKRVGPPRVPSLPPSRHRRTLAAVKNLNSFHDATALAATQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAPAVAGLAVAGKFLGLNKGMVDKAAQEMGKKLALWPGAAGMGGAAMTSV SLGSLAAGAITGVTSNS N +PHTPLGSPRSASASVSAALTDSPVRWDPSSQHGSTVSTDLGLGEISGAE EACVNRGRQSLDAKAAXXXXXXXX V XLSAAVGGGLKRVSSSRTALIQLSDLELAEPCG+RIG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VLPPRPDDEYELLFTTRVIGLQFRELLDGTGVCVAGSEGYVGPAPTTGVPGERLCPDTGDVLESYNGVSARGKPADVV++ELAQCGRPLRLGFRSTRAE LLAEE+EGEME AWVGGSRPRAPL E+GSG XXXXXXXXX SSCRDEAFAGPSQHPWAVSS
Sbjct: 454 GAWRSRARTWASMGDLAEADVAPDVTGGGGGGVDGTAGGSKGAGVRWASRRRSSTSECSTADVSTVAIEDDDGGRIGGGSQRRRGSMRSCLSRDSLAAASDGGDTDLADRTCSEASDLEENQENIVFHSNISSQFREGVCRTIRKRVGPPRVPSLPPSRHRRTLAAVKNLNSFHDATALAATQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AAPAVAGLAVAGKFLGLNKGMVDKAAQEMGKKLALWPGAAGMGGAAMTSVCSLGSLAAGAITGVTSNSNSNAAAGGAG-----NYHPHTPLGSPRSASASVSAALTDSPVRWDPSSQHGSTVSTDLGLGEISGAEWEACVNRGRQSLDAKAAXXXXXXXXVGAVAASXLSAAVGGGLKRVSSSRTALIQLSDLELAEPCGRRIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPPRPDDEYELLFTTRVIGLQFRELLDGTGVCVAGSEGYVGPAPTTGVPGERLCPDTGDVLESYNGVSARGKPADVVARELAQCGRPLRLGFRSTRAEEGLLAEEEEGEMEPAWVGGSRPRAPLLEEGSGSXXXXXXXXXXXXXXXXX--SSCRDEAFAGPSQHPWAVSS 1096
BLAST of mRNA_E-siliculosus-1a_F_contig10269.230.1 vs. uniprot
Match: A0A6H5KNE7_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE7_9PHAE) HSP 1 Score: 764 bits (1974), Expect = 1.190e-262 Identity = 543/644 (84.32%), Postives = 558/644 (86.65%), Query Frame = 1 Query: 16 AWRSRARTWASMGDLAEADVAPDVTGGG-GAEGTAGGSKGAGVRWASRRRSSTSECSTADGSAVAIEDEDGGRIGGGSQRHRGSMRSCLSRDSLAAASDGGDTDLADRTCSEASDLEENQENIVFHSNSSILFREGVCRTIRKRVGPPRVPSLPPSRHRRTLAAVKNLNSFHDATALAATQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAVAGLAVAGKFLGLNKGMVDKAAQEMGKKLALWPGAAGMGGAAMTSVSSLGSLAAGAITGVTSNSXXXXXXXXXXXXXXXNCNPHTPLGSPRSASASVSAALTDSPVRWDPSSQHGSTVSTDLGLGEISGAESEACVNRGRQSLDAKAAXXXXXXXXXXXVXXXXLSAAVGGGLKRVSSSRTALIQLSDLELAEPCGKRIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPPRPDDEYELLFTTRVIGLQFRELLDGTGVCVAGSEGYVGPAPTTGVPGERLCPDTGDVLESYNGVSARGKPADVVSQELAQCGRPLRLGFRSTRAERELLAEEKE-GEMETAWVGGSRPRAPLSEDGSGXXXXXXXXXXGGAAAVSSGASSCRDEAFAGPSQHPWAVSS 1941
AWRSRARTWASMGDLAEADVAPDVTGG G +GTAGGSKGAGVRWASR RSSTSE STADGS VAIED+DGG+IG QR RGSMRSCLSR+SLAAASDGGDTDLADRTCSEASDLEENQENIVFHS+SS FREGVCRTIRKRVGPPRVPSLPPSRHRRTLAAVKNLNSFHDAT LAATQLQXXXXXXXXXXXXXXXXXXXXXXXXXXX AAPAVAGLAVAG FLGLNKGMVDKAAQEMGKKLALWPGAAGMG AAMTSVS XXXXXXXXXXXXXXXN +PHTPLGSPRSASASVSAALTDSPVRWDPSSQHGSTVSTDLGLGEISGAESEACVNRGRQSLDAKAAXXXXXXXXXXX XXXX GLKRVSSSRTALIQL+DLELAEPCG++IGG XXXXXXXXXXXXXXXXXXXXXXXXXXXX VLPPRPDDEYELLFTTRVIGLQF+ELLDGTGVCVAG+EGYVGPAPTTGVPGERLCPD GDVLESYNGVSARGKPADVV++ELAQCGRPLRLGFRSTRAE ELL EE+E GEMETAWVG SRPR PL E+GSGXXXXXXXXXX ASSCRDEAFAGPSQHPWAVSS
Sbjct: 574 AWRSRARTWASMGDLAEADVAPDVTGGSSGGDGTAGGSKGAGVRWASRCRSSTSEFSTADGSTVAIEDDDGGKIGXXXQRRRGSMRSCLSRESLAAASDGGDTDLADRTCSEASDLEENQENIVFHSSSSSQFREGVCRTIRKRVGPPRVPSLPPSRHRRTLAAVKNLNSFHDATVLAATQLQXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------AAPAVAGLAVAGMFLGLNKGMVDKAAQEMGKKLALWPGAAGMGEAAMTSVSXXXXX-----XXXXXXXXXXXXXXXXXXXXXXNYHPHTPLGSPRSASASVSAALTDSPVRWDPSSQHGSTVSTDLGLGEISGAESEACVNRGRQSLDAKAAXXXXXXXXXXXXXXXXXXXXXXXGLKRVSSSRTALIQLADLELAEPCGRQIGGGGNEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWRLSSVLPPRPDDEYELLFTTRVIGLQFQELLDGTGVCVAGTEGYVGPAPTTGVPGERLCPDNGDVLESYNGVSARGKPADVVARELAQCGRPLRLGFRSTRAEDELLPEEEEEGEMETAWVGDSRPRTPLLEEGSGXXXXXXXXXXXXXXXX---ASSCRDEAFAGPSQHPWAVSS 1192 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10269.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10269.230.1 >prot_E-siliculosus-1a_F_contig10269.230.1 ID=prot_E-siliculosus-1a_F_contig10269.230.1|Name=mRNA_E-siliculosus-1a_F_contig10269.230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=648bp GGGGGAWRSRARTWASMGDLAEADVAPDVTGGGGAEGTAGGSKGAGVRWAback to top mRNA from alignment at E-siliculosus-1a_F_contig10269:94..2396+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10269.230.1 ID=mRNA_E-siliculosus-1a_F_contig10269.230.1|Name=mRNA_E-siliculosus-1a_F_contig10269.230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2303bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10269:94..2396+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10269:94..2396+ >mRNA_E-siliculosus-1a_F_contig10269.230.1 ID=mRNA_E-siliculosus-1a_F_contig10269.230.1|Name=mRNA_E-siliculosus-1a_F_contig10269.230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3888bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10269:94..2396+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |