mRNA_E-siliculosus-1a_F_contig1026.228.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1026.228.1
Unique NamemRNA_E-siliculosus-1a_F_contig1026.228.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A6H5KDR8_9PHAE (Peptidase_M14 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDR8_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 2.560e-101
Identity = 146/156 (93.59%), Postives = 154/156 (98.72%), Query Frame = 1 
Query:  145 LAQVYSAQYRYGLRSPGPCSEDGSMKCEQWVLHISDHNTLEAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALREAPESVPWLARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYGQMPQNCMTTITARQ 612
            + QVYSAQYR+GLRSPGPCSEDGS++CEQWVLHISDHNT+ AEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALR+APESVPWLARLALTRSTVIMPMANS+GYYNTDRWENGMDPNRDFPYGQMPQ+CMTTITARQ
Sbjct:    1 MQQVYSAQYRFGLRSPGPCSEDGSIRCEQWVLHISDHNTMAAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALRDAPESVPWLARLALTRSTVIMPMANSIGYYNTDRWENGMDPNRDFPYGQMPQHCMTTITARQ 156
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A836CRP5_9STRA (Peptidase_M14 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRP5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.540e-42
Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 1 
Query:   79 FETLSYDTIVYQIHLLATNYPHLAQVYSAQYRYGLRSPGPCSEDGSMKCEQWVLHISDHNTLEAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVC-HADSSAKECDDDAL--REAPESVPWLARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYGQMPQNCM 591
            ++  +Y  I  ++  +A  YP   +VYSAQ RYG+ SPG C   G   C+QWVLHI+D  TLE + +RPEVFFSGCLHGDE VGP  ++E A L++ AA C  +   A +C D  L        V WL+RL  TRS   MP  N++G+Y   R E+G+DPNRDFPY Q  + CM
Sbjct:   32 YKLRTYAGIEQELEAMAKAYPDYVEVYSAQDRYGIDSPGDC---GEKPCQQWVLHITDLATLEEDVQRPEVFFSGCLHGDEVVGPPTLMETAWLLLRAAACARSGGGAADCRDPTLSGEAGARRVRWLSRLVATRSLWAMPATNALGFYRGRREESGIDPNRDFPYHQDAEQCM 202
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A2R5GMQ1_9STRA (Carboxypeptidase D n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMQ1_9STRA)

HSP 1 Score: 148 bits (373), Expect = 6.570e-38
Identity = 84/183 (45.90%), Postives = 108/183 (59.02%), Query Frame = 1 
Query:   67 PDNQFETLSYDTIVYQIHLLATNYPHLAQVYSAQYRYGLRSPGPCSEDGSMKCEQWVLHISDHNTLEAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALREAPESVPWLARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYGQMPQNCMTTITARQV 615
            P    + L Y  IV ++H L  +YP L ++Y AQ RY L SPG C   G+  C+Q+VL I++  TL  EPERPEVFFSG LHG+E+VGPT ++E A+L++         S   C +           WL RL  TRS  IMP  N++GYY   R EN +DPNRDFP  + P +CM TI AR V
Sbjct:   55 PFRTVKYLDYGDIVDELHRLEKDYPDLVELYDAQARYNLPSPGRCGSHGN--CKQYVLRITNEATL-PEPERPEVFFSGELHGNERVGPTTLMEFARLLL--------ESYTTCSN----------AWLQRLVNTRSIYIMPTTNALGYYRNTRTENTIDPNRDFPIDK-PHSCMETIAARAV 215
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A7S3UYK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UYK6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.180e-35
Identity = 75/169 (44.38%), Postives = 99/169 (58.58%), Query Frame = 1 
Query:  136 YPHLAQVYSAQYRYGLRSPGPCSEDGSMKCEQWVLHISDHNTL--------EAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALREAPESVPWLARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYGQMPQN-CMTTITARQV 615
            YPHL +V  AQ RYG++SPG C   G+  C+QW++ I++  TL        + E +RPEVFFSG LHG+E+VGP+ +V   KL++              +  + +E P   PWL  L  TRS  IMPM N++GYY   R E+ +DPNRDFP      N CM TITAR V
Sbjct:    2 YPHLVEVTDAQSRYGIKSPGEC---GANPCKQWIVRITNEKTLSKSESSTKDNESQRPEVFFSGELHGNERVGPSTLVVFMKLLL--------------ESYSRKENPN--PWLKYLVDTRSIYIMPMTNALGYYQNRREEHNIDPNRDFPIDLSQSNLCMRTITARAV 151
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A1E7ENZ9_9STRA (Zn-dependent exopeptidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENZ9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.780e-34
Identity = 85/202 (42.08%), Postives = 111/202 (54.95%), Query Frame = 1 
Query:   70 DNQFETLSYDTIVYQIHLLATNYPHLAQVYSAQYRYGLRSPGPCSEDGSMKCEQWVLHISD-----HNTLEAE---PERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALREAP--ESVPWLARLALTRSTVIMPMANSMGYYNTDRWEN----------GMDPNRDFPYGQMPQNCMTTITARQV 615
            +  +  LS D IV ++  LAT Y       ++Q RYGL S  P S   +  C   +L I+D     H + E +     RP+VF SG LHGDE+VGP A+V +A L+V AA C A  +    D DAL+E+   E+V WLARL  TR   ++P  NS GYY   R E+          G+DPNRDFPY Q P  CM +ITAR +
Sbjct:   35 EESYIRLSLDEIVDEMQSLATKYSQFVTYDTSQNRYGLPSTCPSSSSQNTGCYNHLLIIADPIIYSHKSGEGQLALQHRPDVFLSGALHGDERVGPVALVHVATLLVKAASCQAKLTVAGNDCDALKESLGIENVAWLARLVSTRRIFVVPTPNSSGYYLEQRNEDYTKPNGQSTSGIDPNRDFPYNQAPSQCMKSITARTI 236
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A7S2RZJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RZJ4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.960e-33
Identity = 80/189 (42.33%), Postives = 111/189 (58.73%), Query Frame = 1 
Query:   76 QFETLSYDTIVYQIHLLATNYPHLAQVYSAQYRYGLRSPG-----PCSEDGSMKCEQWVLHISDHNTLEAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALREAPESVP---WLARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYG-QMPQNCMTTITARQV 615
            +++ L  + IV ++H LA NYP  A + S+Q  +GL   G     P  +DG   C+ W L IS  +    +   PEVF SGC+HG+E+VGPTAV+E A L++ +A C  + S + C    L E+  S     W+ARL  TR  VI+P AN++GYY   R ENG+DPNRDFP+  + P  CM TI  R +
Sbjct:   67 KYQLLDSEEIVSRLHWLADNYPKFATLESSQDSFGLPVAGTEQDCPFEKDGKG-CKNWFLTISGSDE---DNNLPEVFLSGCVHGNERVGPTAVMETATLLLESAACELNYS-EACRASLLTESDISDKERLWMARLVQTRRIVIVPTANALGYYQNVREENGVDPNRDFPFEVEDPSKCMQTIAGRTI 250
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A7S1UCR6_9STRA (Hypothetical protein (Fragment) n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCR6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.410e-33
Identity = 80/199 (40.20%), Postives = 113/199 (56.78%), Query Frame = 1 
Query:   31 LCLAGLSGGDDLPDNQFETLSYDTIVYQIHLLATNYPHLAQVYSAQYRYGLRSPGPCSEDGSMKCEQWVLHISDHNTLEAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDD--DALREAPESVPWLARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYGQMPQN--CMTTITARQV 615
            L L   +G        F+ LSY  I  ++  LA  YP  A + +AQ RYG+ + G C   G   CEQ++L +S  +  +  PE PE F SG +HG+E+VGP A +E ++L+VY A C    + ++C+   +    A E   WL R   TR+  +MPM N++GYY   R ENG+DPNRDFPY   P+   CM +ITAR +
Sbjct:   19 LLLGLAAGAAHAKARHFKNLSYPEIRERLRTLAAKYPQYATLTTAQERYGVGTAGEC---GDGPCEQFILRLSGVSEEDQPPEMPEGFVSGEVHGNERVGPVAALEASELLVYTAACVDTGAHEDCNKIVEYGLTARERA-WLHRTIHTRALYVMPMTNALGYYLNTREENGVDPNRDFPY-DYPEGHRCMRSITARSL 212
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A2D4CIB4_PYTIN (Peptidase_M14 domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIB4_PYTIN)

HSP 1 Score: 135 bits (340), Expect = 3.590e-33
Identity = 79/200 (39.50%), Postives = 112/200 (56.00%), Query Frame = 1 
Query:   31 LCLAGLSGGDDLPDNQFETLSYDTIVYQIHLLATNYPHLAQVYSAQYRYGLRSPGPCS---EDGSMK-CEQWVLHISDHNTLEAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALREAPESVP-WLARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYGQMPQNCMTTITARQV 615
            LC + LS     P   F   SY  +V  +H L+T YP L +V  A+  Y L +P         G+M+ C  +V+H+++H+TL ++P RPEVFFSG LHGDE+VGPT  VE+  L+  +A  +A        ++A+ E P +   WL  L  TRS V+ PM N+ GY +  R E  +DPNRD+ Y      CM  +T+R V
Sbjct:   17 LCSSALSAS---PKGPFRYRSYGEMVAFLHXLSTTYPELVRVSIAEETYNLPTPRELQCLGTHGAMEPCRHYVVHLTNHSTLASDPSRPEVFFSGALHGDERVGPTTTVELIALIASSATAYAKGP-----NEAIAEPPLTTQRWLHELVNTRSIVLTPMTNAYGYAHEKREELDIDPNRDYNYLAKGPECMQAMTSRVV 208
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A024TFI0_9STRA (Peptidase_M14 domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TFI0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.400e-32
Identity = 80/197 (40.61%), Postives = 115/197 (58.38%), Query Frame = 1 
Query:   37 LAGLSGGDDLPDNQFETLSYDTIVYQIHLLATNYPHLAQVYSAQYRYGLRSPGP--CSEDG--SMKCEQWVLHISDHNTLEAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALREAPESVPWLARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYGQMPQNCMTTITARQV 615
            LA  S G   PD  F+  +Y+ +V  +  L  ++P +  ++ AQ +YGL  P    C E+   ++ C+Q+VL I++ +T + +  RPEVFFSG LHG+E+VGP A +E+A L+V  A   A  S      +  R    S  WL RL  +RS  +MPM NS GYY+  R ENG+DPNRD+ Y +   NCM  +T+R V
Sbjct:   15 LAHGSAGSGDPDAMFQYRTYEEMVQTMMALNASHPDVVDLFVAQDKYGLPYPTDLQCGEEHGVAVPCKQYVLRITNESTWDGD--RPEVFFSGALHGNERVGPQATMELALLLVDYATSFAAGSTSSDSTNVRR----SKAWLHRLVNSRSIYMMPMTNSHGYYHNKREENGVDPNRDYNY-KTNGNCMQAMTSRAV 204
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Match: A0A7S0LY62_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LY62_9CRYP)

HSP 1 Score: 123 bits (308), Expect = 3.470e-31
Identity = 67/172 (38.95%), Postives = 96/172 (55.81%), Query Frame = 1 
Query:  103 IVYQIHLLATNYPHLAQVYSAQYRYGLRSPGPCSEDGSMK-CEQWVLHISDHNTLEAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALREAPESVPWLARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYGQMPQNCMTTITARQV 615
            IV ++  L   +P L ++Y+ Q R+GL +PG C  DG +  C+ WV+ +++     A+   PEVF+SG +HGDE+VGPTAV E   L++           +    DA         W  RL  TR   ++P ANS+GY   +R ENG+DPNRDF + Q   +CM TI AR +
Sbjct:    1 IVERLRSLQDRFPDLVEIYNTQDRFGLDAPGTCYVDGGLNPCKVWVIVVTNKALRTADT--PEVFYSGTIHGDERVGPTAVTEFVTLLL-----------ERYGTDA---------WARRLVDTRVLTVVPAANSLGYSRNERTENGLDPNRDFAWDQDAGSCMQTIAARSI 150
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1026.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDR8_9PHAE2.560e-10193.59Peptidase_M14 domain-containing protein n=2 Tax=Ec... [more]
A0A836CRP5_9STRA6.540e-4247.70Peptidase_M14 domain-containing protein n=1 Tax=Tr... [more]
A0A2R5GMQ1_9STRA6.570e-3845.90Carboxypeptidase D n=1 Tax=Hondaea fermentalgiana ... [more]
A0A7S3UYK6_9STRA3.180e-3544.38Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A1E7ENZ9_9STRA1.780e-3442.08Zn-dependent exopeptidase n=1 Tax=Fragilariopsis c... [more]
A0A7S2RZJ4_9STRA1.960e-3342.33Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1UCR6_9STRA2.410e-3340.20Hypothetical protein (Fragment) n=4 Tax=Phaeomonas... [more]
A0A2D4CIB4_PYTIN3.590e-3339.50Peptidase_M14 domain-containing protein n=2 Tax=Py... [more]
A0A024TFI0_9STRA3.400e-3240.61Peptidase_M14 domain-containing protein n=3 Tax=Ap... [more]
A0A7S0LY62_9CRYP3.470e-3138.95Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1026contigE-siliculosus-1a_F_contig1026:25162..31269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size621
Model size621
Exons5
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs28MYZ@1,2QUHR@2759
EggNOG free text desc.Zinc carboxypeptidase
Seed eggNOG ortholog2880.D7FNB3
Seed ortholog evalue6.5e-84
Seed ortholog score317.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1026.228.1prot_E-siliculosus-1a_F_contig1026.228.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1026 25162..31269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.5905259-CDS-E-siliculosus-1a_F_contig1026:25161..253141622927529.5905259-CDS-E-siliculosus-1a_F_contig1026:25161..25314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 25162..25314 +
1696318570.058257-CDS-E-siliculosus-1a_F_contig1026:25161..253141696318570.058257-CDS-E-siliculosus-1a_F_contig1026:25161..25314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 25162..25314 +
1622927529.6048846-CDS-E-siliculosus-1a_F_contig1026:27930..280651622927529.6048846-CDS-E-siliculosus-1a_F_contig1026:27930..28065Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 27931..28065 +
1696318570.0694804-CDS-E-siliculosus-1a_F_contig1026:27930..280651696318570.0694804-CDS-E-siliculosus-1a_F_contig1026:27930..28065Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 27931..28065 +
1622927529.620199-CDS-E-siliculosus-1a_F_contig1026:29656..297701622927529.620199-CDS-E-siliculosus-1a_F_contig1026:29656..29770Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 29657..29770 +
1696318570.0773838-CDS-E-siliculosus-1a_F_contig1026:29656..297701696318570.0773838-CDS-E-siliculosus-1a_F_contig1026:29656..29770Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 29657..29770 +
1622927529.6364238-CDS-E-siliculosus-1a_F_contig1026:30725..308501622927529.6364238-CDS-E-siliculosus-1a_F_contig1026:30725..30850Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 30726..30850 +
1696318570.0848641-CDS-E-siliculosus-1a_F_contig1026:30725..308501696318570.0848641-CDS-E-siliculosus-1a_F_contig1026:30725..30850Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 30726..30850 +
1622927529.649098-CDS-E-siliculosus-1a_F_contig1026:31175..312691622927529.649098-CDS-E-siliculosus-1a_F_contig1026:31175..31269Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 31176..31269 +
1696318570.092218-CDS-E-siliculosus-1a_F_contig1026:31175..312691696318570.092218-CDS-E-siliculosus-1a_F_contig1026:31175..31269Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 31176..31269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1026.228.1

>prot_E-siliculosus-1a_F_contig1026.228.1 ID=prot_E-siliculosus-1a_F_contig1026.228.1|Name=mRNA_E-siliculosus-1a_F_contig1026.228.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=207bp
MRLCLSWAPVLCLAGLSGGDDLPDNQFETLSYDTIVYQIHLLATNYPHLA
QVYSAQYRYGLRSPGPCSEDGSMKCEQWVLHISDHNTLEAEPERPEVFFS
GCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAKECDDDALREAPESVPW
LARLALTRSTVIMPMANSMGYYNTDRWENGMDPNRDFPYGQMPQNCMTTI
TARQVV*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1026:25162..31269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1026.228.1 ID=mRNA_E-siliculosus-1a_F_contig1026.228.1|Name=mRNA_E-siliculosus-1a_F_contig1026.228.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6108bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1026:25162..31269+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCTTGTGCTTGAGCTGGGCGCCGGTGCTCTGCCTAGCCGGCCTCAG
CGGCGGCGATGATCTACCGGACAACCAGTTCGAGACGCTAAGCTACGACA
CCATCGTGTACCAGATTCATTTGTTGGCAACTAATTATCCACACCTCGCT
CAGGTTTGTGCGAAACTCGGCGGTCGGGGGCTGTCTGTCATACCTACGTA
CAAGGGTTAGAGAGTAGGCGCTGTCCGCTGTGTGTTCTCTCTCTGTAGTG
GGGATAAGCGGGAGCGCCAAGAGAGGAATCGGCGCGAAGTTGTACGGGTG
GCATTTACGCACACATGCACTATTAGCCCTAAGAGTTGGGGTGCATACCA
TCCCGTGATCAACAGAAAGTAAAAACAACCATTTTTCGTGTTTGTCAACC
AAAGCGACGCGCAGACGGACGCAGACTTACTCACCTTCCTGTGTGCAAGT
GTGCATGTGGTATGCATATGTGGAGCGCGCAACCCGCCATCCCTCTACGA
TGCACCATTTTATTGTTCACGGCGGATATCAAAGATGACACCCCCGGTTC
AACGGCAACATTGACACCCTGAGATGCCCTTCCGAGCACCCAGTATAGTC
GTCGTTCGACTAAGGTGCCCGGACCACAAGTGTACGTTTTTCAGTTGATT
GACGTTTGTCCAACATTGTGGCATTTATCCCGCGCAGCCAGCAGTTACCC
CTTGAGCAGTTTTGTGGCGAGCTACGCATAGCTCACTCAACAACATTCCA
CACATGCATGTTGTCAAACCACCTTCTGGTGCTGCCCTCGGAGTCTAAAT
GCGTAGGATGTAATCATAATTTTCTCCCCGACGGCCTCGACTCGTCCGCA
CGCAACTCGAACGCCGGTGGAACAGCTCAACTACGCTCGGTCTGCTTCTT
CTCCCGCCACGACCAACCGGACGTTTTTTGCGGAAAGCCTGTCCTCTTCC
TACATCTATCTTGATTGCAGACTGTCTTGTTGTTACCCGCAGCGGAGATG
TCGCTGTCTGCTTCTCGGGTGATAGTAGAACTACAGGTAGTCTCCGCTGA
CGCTAATGAATTCATCGCTAATCTAATGTATTTTTTTTATGCATGTAGAG
TAGAGATGGAATCGGTTTGTCAGTTGTAAGAAAATAGGAAAACAACAATT
TCTTGGGAGCTTATCCCTGGTGGAGTAAAGTCGGCTTTGGGGCATCTATA
GGGCGTGTTAGCTGGCTTGACGACATTCTCATCGCTAGTGACACATGGGA
AGAACATCTAGCCACTCTGACGCTCGTGCTGAACCGCCTTCTGGCTGCGG
GGCTGTCCGCGAACTTCGCGAAATGCATTTTCGGCGCATCATCTCAAGAG
TTCCTCGGCATGATCATTGACAGCACCGGCCTGTACCTGCTGTCATGCAG
TCATGAGTAGCTCTCACTTGAATATGCATACGTCATGAGTGGAGTGGGCC
ATGAGTCATCGTATACATACATATCAATTGTCTCATGGGTGCCGTATGCT
CTCCGGATTGTGATGACAGTTCTGTGGCTCCGTGACGAACAGATCCAGCA
CTGCCCCCATGAAAACGGAACGGTGACAAATCCTCTTCGAAAATTCCTCC
TCCCCTTTGGAATGTGTCCGCGCGTTTTTGTTGTGTGGACACTGCTGGGG
CATATCATGAAAATATCAAGGGTTTACTTGGTGATTTTTGCGCCGTTAAA
GTACGGCCGTGGTGGTCGGTCCCGATAACTCGCCGTTTTACCGCCGTTTT
TTTGTTTTACCGCCTCCGCCAAAAGCGTTACCGCCGAAAAACGCGTTACC
GCCCACCGCCAAAACAATTACCGCCATACGGCGTTACCGCCGAAAAATTA
CCGCCAATGTTCTGTTTTACCGCCTCCACCAAAGCCGTTACCGCCGAAAA
TCGTAATAACGCCTGCCGCCCAAGCAATTATCGCTGTATGGCAATACCGC
CGAAAGAATACCGCCAATAATTGGTTTTTCCGCCTCCGCCAAAGTCGTTA
CCTCGAAAAACGCATTACCACCTACCGTTTTGCCGCCAAGTGCCATTACC
GCCGAAAACCTATCCGCCTGAAAAGCCGTTACCGACTAAACCCTTGAAAC
ATGTTCCCTCGAAATATTCGATTTACCCAGGGGGACGCACGTTACCCTGC
CACGTTGCCACACCGGTCGAGGGAAGGTCTTGACACTCGCACACCACACC
ACACCCAACGGGCTGCACAATCAACCGTCGAGCACAGGATTATGTCCTCC
TGGCATGCTGACCAACAGCGGCGCGACAAGTAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCATGCTGCCACCCACCACCAGTGACACAACGACG
TAAACATGTGCCCCAGTTTTCTGTGGTTTAGGAGGGGTGCCATGTCAACG
CCTCTTCTGGCAGCTCAGGACCGCAACAGCCACCATGTCTGGCCCCACGC
CCAGATGTGCGTGCGTTTTTCTTGTTAGCATCGACCGTGCTAATCGGCTG
ACCAATGAAAATACGTTGGTCTCAGCGTGGTCGAAAACACGAAATGCTTC
TCAAGGCCACGATCTGGGACCCCGTGAGGGAGCGTCATGATGTGTATGCG
TGTGTGTGTGTTTTGAGTTGGCATCGACCGTTCTAACCGGCTGACCAATG
AAAATGCATCAGAGAGCGTGCTTAGCGCGCTACAAGGCTGATGTGTGTTT
TTATCATTAGCAACGACCGCGCTGATGTGTCTGTAGGACTGATTTCCGCC
GGTTCAATGGATTCAACAGGTGTACTCGGCGCAGTACAGATATGGACTGC
GGTCTCCTGGCCCCTGTTCTGAAGACGGGAGCATGAAGTGCGAGCAGTGG
GTGCTGCACATATCGGACCACAACACCTTGGAGGCAGAACCGGAGAGGCC
TGAGGTGTGATTTTGATTGGCTGAACGAAAAGCATACATAACCCAGTCAC
CGAGGCAATACCACGGTACTGCTCTTGTTGAATACCGTAGGACAAGGGCC
TTTTAATACCAAAGCTTTCGCTTCCACTTTTCATGTCCGTAGACGGTTTG
AATTTGAAGAGGAGGGGGGTGAAGAGAGGTCACGAGTGGATTTCCGTGGC
AACGATAACCATAAAGACAACGCCGAAAACGCTCGTCGTCTGGCCTCTGG
GTTTTTTCACGGAATAACAACATCTGCCCAAGGAGATGGAGATGTCAGCA
ACGCCTCTATCCATGTGGATGAGTCGAACCAACGATCACACGATGCTTGT
ATTACCCCCACTCCAATAGCTCCATCCTACGGGAAGACGTTGGGATTGGA
AATTCTCACCTGTGACGGAGACGTTTGTTTTTCCTGTGTTGCAGCGTGTG
TTGAACCCATTGGCGTGAATTTTTTGGCGAAACGTGCGGAGTGCCGTGCC
GATAGGTTGCACAAGATTGGGATCTGTTTTGCCCGGAGTGCGACTGTTCC
TCAGTTAAGGGTCATAACAGACTACTGTTTTCACCTACATCAAGAATTTC
GATGCACCTAACGATAGGATCATCGCGGCATGCGGTGATGACATGTAGTA
GGTCAGTCTGTCGTCACCAAGTAGTCGCACCGGGCCGCCCGTGATAAACT
GAGAATACGGGCCCGACCAGGACTCCTTACTGCTGTGTCTCCGTCATCGA
GCACAGGATATTGCTCAGGTGATAGTGAGGATTAGGATCGATTTAGCCTT
TGCGCCCGCTTTCTTGGGCGAATGATTGGTCTAGATTTCAAGATTCTGAA
CCCGACCTTCTGACGACCTCAATTCTTGTGAGCGGGCCGACCCAGCAGTG
GCGTCGGTAGGGTGTGGCCTTCACAATCCCTAGTATTCTGCTGTGGTTGC
TGGTGTGGTGTTGTTGTTGCTGTGGTGGTGGTGGTGGTGTCTTGGTGTTC
AAAAACATAGTTGAGCCGTAAGAAGTTCGTTCTCTTTCATACAATCCACG
GTATGGGCACAGAATTCCGTCTGCCACAGGGGGGGACCCCAACAGCGCGG
AAGGACGCACACCGGTTGGCACGTCCTGTTCGACGTGACAACGGCGTCAG
AATGTTCCCCCGGTTGAGGCAACGTGGTCCTCAGCGATTGTATCCACGAG
CATGTGCGGGGCTTGTTCAACCGATTGAGAGCATACGGTATGACAAAATA
CCATGGAATGGCACGCACACGGGTTTTAGCCCGTTGTCGTTTGGCATGCC
AGGTGTAGTGCGGGTTGTCTCCATCGAGTGACGCGCAGGCCCCGACGTTG
TGTGCCATGATCCGACGGATATGGAATGAATGACACCATCCCATGGAACG
ACACAGACGCGTTTTTTTTCCCCCGTGGTTGTTTGGCATTCCCGGTGTTC
TTCAGCGTGTGTCTCCATCGAAGTGTCGAGCATACGCGGGTCCTATCGAC
GTTGTGTGCCATGATCCAACCGAAGGAGAGGACACGGAATCCCATGGAAT
GACACTACGAACACGTTTTTTTCCCGTGGTTGTTTGGTATGCCAGGTGTT
CTTCAGCGGGTGTCTCCACGGAGACGAGCAGGTGGGGCCTACCGCGGTGG
TGGAGATGGCGAAACTCATGGTCTACGCTGCGGTATGCCACGCCGACTCC
AGCGCGAAGGTGCAAAAAAGAAAAAAAAAACGCTAAATAACACAATCGCA
ACTTTTTTATGATGAGAATGATCTGCCCCTTTTTATGCCGAGCAAGGCCT
TCGACCACGGGAATCGACCCCGTCAAGTGTTCGACTAGTACAGACAGAAG
AACGTACTGGGCAGAGAGAATGGAACGGCTTTCATTGTGAAGACAACACC
AACAACCACAACAAAGTCTTCCCTTTTGATGTCGAGGAAGGTTTTTTCTT
CTTTTTTTTCCGAAGGTCTTTCCTTTTTATGCCGAGGAAGGCCTTTCTTT
TTGTGCCGAGGAAGGTCTTGTCCCTTTGAAGTGTAAAGACTGCTCCGTAG
GCGTACATACGTGTACCTTGCTGTACGAGGGAGATCAGTACGTACCATAG
TAGGCGGGGTCTGGCATATGGTTTGGCGTGTTCAGGGCACGGTGCTGTTG
CTGTGCTTCCGTGCGACGACGCTTGACCGATAACAAAACTATACATTCCA
AGGTCGGGCGAGAATCGATGTCGTCCAACAGCAGCAGATGGACCGCTGTC
GGCCTGTACACCAACTGTGCGGCTTCATCTGGTTGTTCCGTATGATATGT
ATGCTACAGTAGCGCCTCGGGTTCCGTCTTCGCCGGAATTGACCAAGCGC
CCGAAGACATGGAACGTACATTCTCTAAAAAAATGTTTATTTATGTGCAG
GCGACGAGAGGCACACTCCGACGTCGACCCCCCCCCCCCCCCCCCCCCCC
CCCCTCTTTTTTTTTTTTTTTTCTTTCTCGCCCCCGGCGTGGCGCGCCGC
CGGGCGCCGGCGGCGCCGGCCGCGGCGNNNNNNNNNGCCCGAAGACAGGG
AACGTACATTCTCTAAAAAAATGTTTTTTTGTGGGCGGGCGACGAGAGGC
ACCCCCCGGCGTCGCCCCCCCCCCCCCCCCCCCTTTTTATGTTTTTTTTC
TGTTCCGGCGTTAGGAGTGCGACGACGACGCGCTGCGAGAGGCGCCGGAG
TCGGTTCCCTGGTTGGCCCGACTAGCCCTGACGCGCAGCACCGTGATCAT
GCCCATGGCGAATTCTATGGGGTACTACAACACAGACAGGTGTGACCAAA
GGGAGAGTGCCCACCTGGCAGGTGGACGTGAACACCCCACCCACTCTCTT
TCTTTCTTCCTGTTTTCAAGACCCGCTTCGGCGTAGATCCGTGCCGGGCA
GAGTGCGGTATTCCGTGTTTCAGGAAGGCTCTGCGGTATGGGCCTGCCTC
GCCTTCTCCACGTTCCGCCAGGCGGCAGGCAATGTGAATACTCTCCAACA
CCGTGAACGCCTCTGCCACGCACTGAATGCCACTCCTATCTTCTTTGGCC
TCCCCTCGCGTCGTGCGACGTATTATTTGACTCCGGTAACATGTCAACTG
GGGGCCTTGCGAAGATGGGAAAACGGGATGGATCCGAACCGCGACTTCCC
CTACGGCCAGATGCCTCAGAATTGCATGACGACCATCACAGCGAGGCAAG
TGGTTTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1026:25162..31269+

>mRNA_E-siliculosus-1a_F_contig1026.228.1 ID=mRNA_E-siliculosus-1a_F_contig1026.228.1|Name=mRNA_E-siliculosus-1a_F_contig1026.228.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1242bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1026:25162..31269+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCTTGTGCTTGAGCTGGGCGCCGGTGCTCTGCCTAGCCGGCCTCAG
CGGCGGCGATGATCTACCGGACAACCAGTTCGAGACGCTAAGCTACGACA
CCATCGTGTACCAGATTCATTTGTTGGCAACTAATTATCCACACCTCGCT
CAGATGCGCTTGTGCTTGAGCTGGGCGCCGGTGCTCTGCCTAGCCGGCCT
CAGCGGCGGCGATGATCTACCGGACAACCAGTTCGAGACGCTAAGCTACG
ACACCATCGTGTACCAGATTCATTTGTTGGCAACTAATTATCCACACCTC
GCTCAGGTGTACTCGGCGCAGTACAGATATGGACTGCGGTCTCCTGGCCC
CTGTTCTGAAGACGGGAGCATGAAGTGCGAGCAGTGGGTGCTGCACATAT
CGGACCACAACACCTTGGAGGCAGAACCGGAGAGGCCTGAGGTGTACTCG
GCGCAGTACAGATATGGACTGCGGTCTCCTGGCCCCTGTTCTGAAGACGG
GAGCATGAAGTGCGAGCAGTGGGTGCTGCACATATCGGACCACAACACCT
TGGAGGCAGAACCGGAGAGGCCTGAGGTGTTCTTCAGCGGGTGTCTCCAC
GGAGACGAGCAGGTGGGGCCTACCGCGGTGGTGGAGATGGCGAAACTCAT
GGTCTACGCTGCGGTATGCCACGCCGACTCCAGCGCGAAGGTGTTCTTCA
GCGGGTGTCTCCACGGAGACGAGCAGGTGGGGCCTACCGCGGTGGTGGAG
ATGGCGAAACTCATGGTCTACGCTGCGGTATGCCACGCCGACTCCAGCGC
GAAGGAGTGCGACGACGACGCGCTGCGAGAGGCGCCGGAGTCGGTTCCCT
GGTTGGCCCGACTAGCCCTGACGCGCAGCACCGTGATCATGCCCATGGCG
AATTCTATGGGGTACTACAACACAGACAGGAGTGCGACGACGACGCGCTG
CGAGAGGCGCCGGAGTCGGTTCCCTGGTTGGCCCGACTAGCCCTGACGCG
CAGCACCGTGATCATGCCCATGGCGAATTCTATGGGGTACTACAACACAG
ACAGATGGGAAAACGGGATGGATCCGAACCGCGACTTCCCCTACGGCCAG
ATGCCTCAGAATTGCATGACGACCATCACAGCGAGGCAAGTGGTTTGAAT
GGGAAAACGGGATGGATCCGAACCGCGACTTCCCCTACGGCCAGATGCCT
CAGAATTGCATGACGACCATCACAGCGAGGCAAGTGGTTTGA
back to top