mRNA_E-siliculosus-1a_F_contig10255.223.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10255.223.1
Unique NamemRNA_E-siliculosus-1a_F_contig10255.223.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10255.223.1 vs. uniprot
Match: A0A6H5KAA4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.960e-13
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 2 
Query:    2 PHARLAADAQQQQEGFGHPLRVSLALLARKTPPFTTTHV 118
            PHARLAADAQ QQEGFGHPLRVSLALLARKT PF TTH 
Sbjct:   41 PHARLAADAQ-QQEGFGHPLRVSLALLARKTAPFATTHA 78
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BLAST of mRNA_E-siliculosus-1a_F_contig10255.223.1 vs. uniprot
Match: A0A6H5JES7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 7.050e-8
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 2 
Query:    5 HARLAADAQQQQEGFGHPLRVSLALLARKTPPFTTTHV*AKACRGARGR 151
            +ARLAA A  QQEG G PLRVSLALLARKTPP    H  AK CRG+ G+
Sbjct:   42 YARLAAGAP-QQEGIG-PLRVSLALLARKTPPLAMGHAYAKPCRGSEGK 88
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BLAST of mRNA_E-siliculosus-1a_F_contig10255.223.1 vs. uniprot
Match: A0A6H5KJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA1_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 8.720e-6
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = -1 
Query:    3 GSFWRAGLDSPSRDDRNLLAAAAHPPRGVRV 95
            G+   +GLDSPSRDDRNLLAAA HPPRGVRV
Sbjct:    6 GAQSNSGLDSPSRDDRNLLAAA-HPPRGVRV 35
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BLAST of mRNA_E-siliculosus-1a_F_contig10255.223.1 vs. uniprot
Match: A0A6H5JY20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY20_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 4.860e-5
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = -2 
Query:    5 SEGGGLSGEQG*THPQGMTETFLLLLRIRREACV 106
            SEGGGLS EQG THPQG T+TFLL  R RREACV
Sbjct:    4 SEGGGLSSEQGWTHPQG-TDTFLLR-RTRREACV 35
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BLAST of mRNA_E-siliculosus-1a_F_contig10255.223.1 vs. uniprot
Match: A0A6H5KA44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA44_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 5.420e-5
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:    3 AGLDSPSRDDRNLLAAAAHPPRGVRV 80
            +GLDSPSRDDRNLLAAA HPPRGVRV
Sbjct:   62 SGLDSPSRDDRNLLAAA-HPPRGVRV 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10255.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAA4_9PHAE3.960e-1389.74Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JES7_9PHAE7.050e-867.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJA1_9PHAE8.720e-680.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY20_9PHAE4.860e-579.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA44_9PHAE5.420e-592.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10255contigE-siliculosus-1a_F_contig10255:6..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size387
Model size495
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.9179413-CDS-E-siliculosus-1a_F_contig10255:5..3921622927528.9179413-CDS-E-siliculosus-1a_F_contig10255:5..392Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10255 6..392 +
1696318569.6698723-CDS-E-siliculosus-1a_F_contig10255:5..3921696318569.6698723-CDS-E-siliculosus-1a_F_contig10255:5..392Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10255 6..392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.9366271-UTR-E-siliculosus-1a_F_contig10255:392..4991622927528.9366271-UTR-E-siliculosus-1a_F_contig10255:392..499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10255 393..499 +
1696318569.681791-UTR-E-siliculosus-1a_F_contig10255:392..4991696318569.681791-UTR-E-siliculosus-1a_F_contig10255:392..499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10255 393..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10255.223.1prot_E-siliculosus-1a_F_contig10255.223.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10255 6..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10255.223.1

>prot_E-siliculosus-1a_F_contig10255.223.1 ID=prot_E-siliculosus-1a_F_contig10255.223.1|Name=mRNA_E-siliculosus-1a_F_contig10255.223.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=129bp
TTRTPRGGCAAAARRFRSSLEGESSPARQKDPPLHYNPCLSKSLSRSEGK
KQGGHTMVSQQRSGKRDTHVACNHADVWCVVRTHTHGGCLGPPARNVSFV
LRCRLECRRSLKKKSSRPRGPSYLVGLA*
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mRNA from alignment at E-siliculosus-1a_F_contig10255:6..499+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10255.223.1 ID=mRNA_E-siliculosus-1a_F_contig10255.223.1|Name=mRNA_E-siliculosus-1a_F_contig10255.223.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=494bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10255:6..499+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCACACGCACGCCTCGCGGCGGATGCGCAGCAGCAGCAAGAAGGTTTCG
GTCATCCCTTGAGGGTGAGTCTAGCCCTGCTCGCCAGAAAGACCCCCCCC
TTCACTACAACCCATGTCTAAGCAAAAGCTTGTCGAGGAGCGAGGGGAAG
AAGCAAGGGGGGCACACAATGGTTTCGCAGCAGCGGTCAGGAAAGAGGGA
CACCCATGTGGCCTGCAATCACGCGGATGTGTGGTGTGTTGTACGCACAC
ACACACATGGCGGGTGTCTTGGTCCGCCGGCGAGGAACGTTTCTTTCGTG
CTGCGATGCCGTCTTGAGTGCCGTCGTTCGCTCAAGAAGAAGTCAAGCCG
TCCGAGGGGGCCGTCTTATCTCGTTGGCTTGGCGTGACTCACGGGTGGCC
GGCCACCTGAGTCAGAGCTTCGCCCCTGCCATGCACGTGACCTTGCTCGA
ACCAAAGGAGATCCGCACCTTTTTTACTGCTGTGCTGCTGCATC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10255:6..499+

>mRNA_E-siliculosus-1a_F_contig10255.223.1 ID=mRNA_E-siliculosus-1a_F_contig10255.223.1|Name=mRNA_E-siliculosus-1a_F_contig10255.223.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=774bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10255:6..499+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCACACGCACGCCTCGCGGCGGATGCGCAGCAGCAGCAAGAAGGTTTCG
GTCATCCCTTGAGGGTGAGTCTAGCCCTGCTCGCCAGAAAGACCCCCCCC
TTCACTACAACCCATGTCTAAGCAAAAGCTTGTCGAGGAGCGAGGGGAAG
AAGCAAGGGGGGCACACAATGGTTTCGCAGCAGCGGTCAGGAAAGAGGGA
CACCCATGTGGCCTGCAATCACGCGGATGTGTGGTGTGTTGTACGCACAC
ACACACATGGCGGGTGTCTTGGTCCGCCGGCGAGGAACGTTTCTTTCGTG
CTGCGATGCCGTCTTGAGTGCCGTCGTTCGCTCAAGAAGAAGTCAAGCCG
TCCGAGGGGGCCGTCTTATCTCGTTGGCTTGGCGTGAACCACACGCACGC
CTCGCGGCGGATGCGCAGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAG
GGTGAGTCTAGCCCTGCTCGCCAGAAAGACCCCCCCCTTCACTACAACCC
ATGTCTAAGCAAAAGCTTGTCGAGGAGCGAGGGGAAGAAGCAAGGGGGGC
ACACAATGGTTTCGCAGCAGCGGTCAGGAAAGAGGGACACCCATGTGGCC
TGCAATCACGCGGATGTGTGGTGTGTTGTACGCACACACACACATGGCGG
GTGTCTTGGTCCGCCGGCGAGGAACGTTTCTTTCGTGCTGCGATGCCGTC
TTGAGTGCCGTCGTTCGCTCAAGAAGAAGTCAAGCCGTCCGAGGGGGCCG
TCTTATCTCGTTGGCTTGGCGTGA
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