mRNA_E-siliculosus-1a_F_contig1025.222.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1025.222.1 vs. uniprot
Match: D7G2Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y2_ECTSI) HSP 1 Score: 1400 bits (3624), Expect = 0.000e+0 Identity = 1065/1306 (81.55%), Postives = 1082/1306 (82.85%), Query Frame = 1 Query: 1 MSGMSLASLGSLSRSRSTRRLGGLFDVDEALDDSRAWRNYFLLQHGPAGLSESGSDVVAELMGKPRAGNPVGAGAEATVAGGARSAEGADAKVEGAGVAAXXXXXXXXXXXXXXXXXVVAVGDGDDIPSPPACVDGRGRVQDLSQRVAELRQQSYNRRLMATAAVGPPRGRAAPPPLPVGVNLAPDETPASSPSEPKLSPGSVGQRVPSSGVVPGAKAAAVNAGYGDSMLEGSGGG-----------KGRVRGRRRKAAASFIRKIGLAATGRQHQHHQSEGGSLESSAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVKRAGLRGRLGQVWSSRRKVDRRDSGSKERAGELMRPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPLGRSFDPDQPLLSGSVDDSNVSLPPQFGTAAKSLGASNASFDPNRSTRSWFDTSAESQARVPPEVPPGLWVEPQPQHGALAPLAVGRQTVPPTSRPWSEAERETAAAAAAGIALATGATMSVGSTERGGPSVSISPARQAGXXXXXXXXXXXXXXXXXVLARPTFDEDLLVTELSDLSVSGGGEGNGQDGSSVGGMCLGDATGEQQQGRMWPNCAAAGEGKGALASTAAA-ADWSRPTQQQREAMQGLRWLAAQQGSVPPNGDTAPAHPPMGLAPQSTGARAISAESGIDPMLGQAPTMAPTLQFSGGSTRSQSVDVGMLSHKGQSRGDSGTAAAHTGWGVDSGGXXXXXXXDGRLSRAMGSWPNQGADANVVTRSXXXXXXXXXXXXXXXXXXTRSLSRTGLVASSGSPLQRSVSVDTSASGVPHGSHRGXXXXXXX---EGGNGAQFASLRALQQEAAGTGGFVPXXXXXXPALDGDDSMHAPALSGGGGALEGGQKNQXXXXXXXXXXRKSWSALHAMIPLPGMXXXXXXXXXXXXXXXXXXXXXXXXXX----ASXXXXXXXXHDDDGSSRRPSLPTSTNGVFADGTAALAGGGGSDAGSTDGVDGGRRRR-LSDRSWRAALPTFRHSKEPAAAGSDTLDMSVQ-GMDEMFLKRRLDSSRLLDLSVGNHKKQCLDGLAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTVAGTKPPAGVPIAIAPKGELPSAAAGGGVXXXXXXXXXXXXXXXXXSLGIPQQKQKAEVNPQAKKARQAVAARRPRDRGRFMKSSQKWVTQGELKQTKTTGKPADDGQG 3855
MSGMSLASLGSLSRSRST+RLGGLFDVDEALDDSRAWRNYFLLQHGPAGLSESGSDVVAELMGKPRAGN VGAGAE TVAGGA SAE XXXXXXXXXXXXXXXXX D PSPPACVDGRGRVQDLSQRVAELRQQSY+RRLMATAAVGPPRGRAAPPPLPVGVNLAPDETPA+SPSEPKLSPGSV QRVP SGVVPGAKAAAV+AGYGDSMLEGSGGG KGRV+GRRRKAAASFIRKIGLAATGRQHQ HQSEGGSLESSAH XXXXXXXXXXXX GSAVKRAGLRGRLGQVWSSRRKVDRRDSGSKERAGELMRPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPLGRSFDP+QPLLSGSVDDSNVSLPPQFGTAA SLGASNASFDPNRSTRSWFDTSAESQARVPPEVPPGLWVEPQPQHGALAPLAVG+QTVPPTSRPWSEAERETAAAAAAGIALAT ATMSVGSTERGGPSVSISPA+QA XXXXXXXXXXXXXXXXX+LARPTFDE+LLV ELSDLSVSGGGEGNGQDGSSVGGMCLGDATGEQQQGRMWPNCAA GEG ADWSRP QQQREAMQGLRW AAQQ SVPPNGDTAPAHPPMGL+PQSTGAR ISAESGIDPMLGQAPT APTLQFSGGSTRSQSVDVGMLSHKGQSR DSGTAAAHTGWGVD G XXXXXDGRLSRAMGSWP+QG DANVVTRS XXXXXXX TRSLSR+GL+ASSG PLQRSVSVDTSASGVPHGSHRG XXXXX EG GAQFASLRALQQEAAGTGGFVP XXXXX XXXXXXXXXXRKSWSALHAMIPLPGMXXXXXXXXXXXXXXXXXXXXXXXXX + XXXXXXXX DDDGSSRRPSLPTST GVFADGTAALAG AGSTDGVDGGRRRR LS RSWRAALPTFRHSKEPAAAGSDTLDMSVQ MDEMFLKRRL+SSR LDLSVGNHKKQCLDGL PPAA XXXXXXXXXXXXXX STVAGTKP AGVPIAIAPKG+LPSAA G X SLGIPQQKQKAEVNPQAKKARQAVAARRPRDRGRFMKSSQKWVTQGELKQTKTTGKPADDGQG
Sbjct: 1 MSGMSLASLGSLSRSRSTKRLGGLFDVDEALDDSRAWRNYFLLQHGPAGLSESGSDVVAELMGKPRAGNSVGAGAEDTVAGGATSAE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTPSPPACVDGRGRVQDLSQRVAELRQQSYSRRLMATAAVGPPRGRAAPPPLPVGVNLAPDETPATSPSEPKLSPGSVAQRVPPSGVVPGAKAAAVDAGYGDSMLEGSGGGGRGVDSSXXXXKGRVKGRRRKAAASFIRKIGLAATGRQHQQHQSEGGSLESSAHSGSNNXXXXXXXXXXXXAEGSLTSGSWSADSSSQG-----GSAVKRAGLRGRLGQVWSSRRKVDRRDSGSKERAGELMRPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPLGRSFDPNQPLLSGSVDDSNVSLPPQFGTAANSLGASNASFDPNRSTRSWFDTSAESQARVPPEVPPGLWVEPQPQHGALAPLAVGQQTVPPTSRPWSEAERETAAAAAAGIALATSATMSVGSTERGGPSVSISPAQQAXXXXXXXXXXXXXXXXXXLLARPTFDENLLVAELSDLSVSGGGEGNGQDGSSVGGMCLGDATGEQQQGRMWPNCAAGGEGXXXXXXXXXXXADWSRPNQQQREAMQGLRWPAAQQRSVPPNGDTAPAHPPMGLSPQSTGARGISAESGIDPMLGQAPTTAPTLQFSGGSTRSQSVDVGMLSHKGQSRDDSGTAAAHTGWGVDGG---XXXXXDGRLSRAMGSWPHQGVDANVVTRSSXXXXXXX----------TRSLSRSGLIASSGGPLQRSVSVDTSASGVPHGSHRGGGXXXXXXXXEGRTGAQFASLRALQQEAAGTGGFVPQXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSWSALHAMIPLPGMXXXXXXXXXXXXXXXXXXXXXXXXXLPLPASGXXXXXXXXXDDDGSSRRPSLPTSTTGVFADGTAALAGXXXXXAGSTDGVDGGRRRRRLSGRSWRAALPTFRHSKEPAAAGSDTLDMSVQDNMDEMFLKRRLNSSRSLDLSVGNHKKQCLDGLGPPAAPAGESTAATPGTADTCNAAGATNPTAFEPFDFLRGLGGXXXXXXXXXXXXXX----STVAGTKPSAGVPIAIAPKGDLPSAA-GXXXXMIGGAAAGAPPSPQPPSLGIPQQKQKAEVNPQAKKARQAVAARRPRDRGRFMKSSQKWVTQGELKQTKTTGKPADDGQG 1281
BLAST of mRNA_E-siliculosus-1a_F_contig1025.222.1 vs. uniprot
Match: A0A6H5K7Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z9_9PHAE) HSP 1 Score: 1377 bits (3565), Expect = 0.000e+0 Identity = 1061/1365 (77.73%), Postives = 1091/1365 (79.93%), Query Frame = 1 Query: 1 MSGMSLASLGSLSRSRSTRRLGGLFDVDEALDDSRAWRNYFLLQHGPAGLSESGSDVVAELMGKPRAGNPVGAGAEATVAGGARSAEGADAKVEGAGVAAXXXXXXXXXXXXXXXXX--------VVAVGDGDDIPSPPACVDGRGRVQDLSQRVAELRQQSYNRRLMATAAVGPPRGRAAPPPLPVGVNLAPDETPASSPSEPKLSPGSVGQRVPSSGVVPGAKAAAVNAGYGDSMLEGSGGGK-----------GRVRGRRRKAAASFIRKIGLAATGRQHQHHQSEGGSLESSAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------GSAVKRAGLRGRLGQVWSSRRKVDRRDSGSKERAGELMRPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPLGRSFDPDQPLLSGSVDDSNVSLPPQFGTAAKSLGASNASFDPNRSTRSWFDTSAESQARVPPEVPPGLWVEPQPQHGALAPLAVGRQTVPPTSRPWSEAERETAAAAAAGIALATGATMSVGSTERGGPSVSISPARQAGXXXXXXXXXXXXXXXXXVLARPTFDEDLLVTELSDLSVSGGGEGNGQDGSSVGGMCLGDATGEQQQGRMWPNCAAAGEGKGALASTAAA-ADWSRPTQQQREAMQGLRWLAAQQGSVPPNGDTAPAHPPMGLAPQSTGARAISAESGIDPMLGQAPTMAPTLQFSGGSTRSQSVDVGMLSHKGQSRGDSGTAAAHTGWGVDSGGXXXXXXXDGRLSRAMGSWPNQGADANVVTRSXXXXXXXXXXXXXXXXXXTRSLSRTGLVASSGSPLQRSVSVDTSASGVPHGSHRGXXXXXXXEGGNGAQFASLRALQQEAAGTGGFVPXXXXXXP--ALDGDDSMHAPALSGGGGALEGGQKNQXXXXXXXXXXRKSWSALHAMIPLPGMXXXXXXXXXXXXXXXXXXXXXXXXXXASXXXXXXXXHDDDGSSRRPSLPTSTNGVFADGTAALAGGGGSDAGSTDGVDGGRRRRLSDRSWRAALPTFRHSKEPAAAGSDTLDMSVQG---MDEMFLKRRLDSSRLLDLSVGNHKKQCLDGLAPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-TVAGTKPPAGVPIAIAPKGELPSAAAGGGVXXXXXXXXXXXXXXXXXSLGIPQQKQKAEVNPQAKKARQAVAARRPRDRGRFMKSSQKWVTQGELKQTKTTGKPADDGQG 3855
MSGMSLASLGSLSRSRST+RLGGLFDVDEALDDS+AWRNYFLLQHGPAGLSESG+DVVAELMGKP AGNPVGAGAEATV GGARSA GADAKVE AGVA XXXXXXXXXXXXX VVA G+GDDIPSPPACVDGRGRVQDLS+RVAELRQQSY+RRLMATAAVGPPRGRA+PPPLPVGVNLAPDETP +SPSEPKLSPGSV QRVP SGVV AK AV+AG G+SMLEGSGGG GRV+GRRRKAAASFIRKIGLAATGRQHQ HQSEGGSLESSAH XXXXXXXXXXXXXX GSAVKRAGLRGRLGQVWSSRRKVDR D G KERAGELMR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TSPLGRSFDP+QPLLSGSVDDSNVSLPPQFGTAA SLGASNASFDPNRSTRSWFDTSAESQARVPPE P GLWVEPQPQHG LAPLAV ++ V PTSRPWSEAERE AAAAA GIA GAT+SVGSTERGGPSVSISPAR G XXXXXXXXXXXXX VLARPTFDE LLV ELSDLSVS GGE NGQDGS+VGG+CLGDATGEQQQGRMWPNCAAAGE ADWSRP QQQREAMQGLRW AAQQGS PPNGDTAP HPPMGLAPQS+GARA+SAESG+DPML QAPTM PTLQF GGSTRSQSVDVGMLSHK QSR DS TAAAHTGWGVD GGXX DGRLSRAMGSWP+QGADA+V TRS XXXXXXXX TRSLSR+GL+ SS SPLQRSVSVDTS SGVPH SHRG E +GAQFASLRALQQEAAGTGGFVPXXXXXX ALDGDD MHAP LSGGGGALEGGQKNQ RKSWSALHAMIPLPGMXXXXXXXXXXXXXXXXXX ASXXXXXXXX DG SRRPSLPTSTNG FA+GTA LAGGGGSDAGSTDGVDGGRRRRLS RSWR A PT RHSK PAAAGSDTLDMSVQ MDE+FLKRRL SSR LDLSVGNHK+QCLDGL PPAA XXXXXXXXXXXXXXXXX XXXXXXXXXXXXS TVAGTKPPAGVPIAIAPKG+LP AA GGG XXXXXXXXXXXXXXXXX LGIPQQKQKAEVN QAKKARQAVAARRPRDRGRFMKSSQKWVTQGELKQTKTTGKPADDG+G
Sbjct: 102 MSGMSLASLGSLSRSRSTKRLGGLFDVDEALDDSKAWRNYFLLQHGPAGLSESGNDVVAELMGKPCAGNPVGAGAEATVVGGARSAGGADAKVEDAGVATAGGAXXXXXXXXXXXXXXXXXXAATVVAEGEGDDIPSPPACVDGRGRVQDLSERVAELRQQSYSRRLMATAAVGPPRGRASPPPLPVGVNLAPDETPPASPSEPKLSPGSVAQRVPPSGVVQVAKLTAVDAGSGESMLEGSGGGXXXXXXXXXXXXGRVKGRRRKAAASFIRKIGLAATGRQHQQHQSEGGSLESSAHSGSXXXXXXXXXXXXXXAEGALTSGSWGADRSSQGGTGGSNTLPYTRSGSDPRSTQAFPNSPSLAAPEPLARGASVGLGALAESSAAATAALAAGSAVKRAGLRGRLGQVWSSRRKVDRSDCGGKERAGELMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TSPLGRSFDPNQPLLSGSVDDSNVSLPPQFGTAANSLGASNASFDPNRSTRSWFDTSAESQARVPPEFPSGLWVEPQPQHGVLAPLAVEQRGVAPTSRPWSEAEREAAAAAAXGIAXXAGATISVGSTERGGPSVSISPARHGGGGXXXXXXXXXXXXXA-VLARPTFDEKLLVAELSDLSVSCGGESNGQDGSNVGGVCLGDATGEQQQGRMWPNCAAAGEXXXXXXXXXXXXADWSRPNQQQREAMQGLRWTAAQQGSGPPNGDTAPTHPPMGLAPQSSGARAVSAESGMDPMLDQAPTMPPTLQFGGGSTRSQSVDVGMLSHKSQSRDDSRTAAAHTGWGVDGGGXXG----DGRLSRAMGSWPHQGADADVFTRSSXXXXXXXXG--------TRSLSRSGLIVSSRSPLQRSVSVDTSVSGVPHWSHRGDGGGGSREEVSGAQFASLRALQQEAAGTGGFVPXXXXXXXXLALDGDDRMHAPTLSGGGGALEGGQKNQHHQH------RKSWSALHAMIPLPGMXXXXXXXXXXXXXXXXXXRRFTLPLLASXXXXXXXX---DGQSRRPSLPTSTNGFFANGTAGLAGGGGSDAGSTDGVDGGRRRRLSGRSWREAFPTLRHSKGPAAAGSDTLDMSVQDKIKMDEVFLKRRLASSRSLDLSVGNHKRQCLDGLGPPAAPAGESXXXXXXXXXXXXXXXXXNAAGTTNPSAFEPFDFLRGLGGXXXXXXXXXXXXSSTVAGTKPPAGVPIAIAPKGDLPPAA-GGGAXXXXXXXXXXXXXXXXXXLGIPQQKQKAEVNLQAKKARQAVAARRPRDRGRFMKSSQKWVTQGELKQTKTTGKPADDGRG 1441 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1025.222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1025.222.1 >prot_E-siliculosus-1a_F_contig1025.222.1 ID=prot_E-siliculosus-1a_F_contig1025.222.1|Name=mRNA_E-siliculosus-1a_F_contig1025.222.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1286bp MSGMSLASLGSLSRSRSTRRLGGLFDVDEALDDSRAWRNYFLLQHGPAGLback to top mRNA from alignment at E-siliculosus-1a_F_contig1025:32224..38901+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1025.222.1 ID=mRNA_E-siliculosus-1a_F_contig1025.222.1|Name=mRNA_E-siliculosus-1a_F_contig1025.222.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1025:32224..38901+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1025:32224..38901+ >mRNA_E-siliculosus-1a_F_contig1025.222.1 ID=mRNA_E-siliculosus-1a_F_contig1025.222.1|Name=mRNA_E-siliculosus-1a_F_contig1025.222.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=7716bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1025:32224..38901+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |