prot_E-siliculosus-1a_F_contig137.2214.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig137.2214.1
Unique Nameprot_E-siliculosus-1a_F_contig137.2214.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length101
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 9.920e-63
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG-FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEGANGMDEEEDEG 100
            MATPVNPKPFLNELTGKPVMVKLKWGMEYKG FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEGANGMDEEEDEG
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEGANGMDEEEDEG 101          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 144 bits (362), Expect = 7.870e-43
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 85
            + PVNPKPFLN LTGKPVMVKLKWGMEYKGFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE   +AD
Sbjct:   10 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 93          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 142 bits (358), Expect = 2.520e-42
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 85
            M+ PVNPKPFLN LTGKPV+VKLKWGMEYKGFL SVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE   +AD
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 85          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 142 bits (358), Expect = 2.520e-42
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 85
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYLRGV EDE   + D
Sbjct:    1 MATVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDAVEED 86          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: A0A835M2E4_9MAGN (Sm protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 142 bits (357), Expect = 3.800e-42
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 85
            + PVNPKPFLN LTGKPVMVKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE   +AD
Sbjct:    4 SVPVNPKPFLNTLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDEDITEAD 87          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: A0A7I8LGH6_SPIIN (Sm protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN)

HSP 1 Score: 141 bits (356), Expect = 5.240e-42
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 85
            PVNPKPFLN LTGKPV+VKLKWGMEYKGFLVSVD+YMNL L +TEEYVDGEF GNLG++LIRCNNVLYLRGV ED+    AD
Sbjct:    7 PVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYVDGEFTGNLGEILIRCNNVLYLRGVPEDDEIEDAD 88          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: A0A804J679_MUSAM (Sm protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 141 bits (355), Expect = 7.020e-42
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 85
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEYVDG+F GNLG++LIRCNNVLYLRGV EDE    AD
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 86          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: A0A5P1EWT9_ASPOF (Sm protein F n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EWT9_ASPOF)

HSP 1 Score: 141 bits (355), Expect = 8.910e-42
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 85
            A PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE    AD
Sbjct:   11 AIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 94          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: A0A200QAB0_9MAGN (Sm protein F n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QAB0_9MAGN)

HSP 1 Score: 143 bits (360), Expect = 1.080e-41
Identity = 67/84 (79.76%), Postives = 74/84 (88.10%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 85
            A PVNPKPFLN LTGKPVMVKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE    AD
Sbjct:   73 AVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 156          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Match: A0A2N9FFJ8_FAGSY (Sm protein F n=2 Tax=Fagaceae TaxID=3503 RepID=A0A2N9FFJ8_FAGSY)

HSP 1 Score: 140 bits (354), Expect = 1.090e-41
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 85
            A PVNPKPFLN LTGKPV+VKLKWGMEYKGFL SVD+YMNL L +TEEY+DG+F GNLG++LIRCNNV+YLRGV EDE   +AD
Sbjct:    4 AIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVIYLRGVPEDEEIEEAD 87          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig137.2214.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI9.920e-6399.01Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7J6WA49_THATH7.870e-4379.76Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
A0A6P9F5Z8_JUGRE2.520e-4277.65Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A176VZF1_MARPO2.520e-4280.23Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
A0A835M2E4_9MAGN3.800e-4278.57Sm protein F n=1 Tax=Coptis chinensis TaxID=261450... [more]
A0A7I8LGH6_SPIIN5.240e-4281.71Sm protein F n=1 Tax=Spirodela intermedia TaxID=51... [more]
A0A804J679_MUSAM7.020e-4280.23Sm protein F n=10 Tax=Mesangiospermae TaxID=143718... [more]
A0A5P1EWT9_ASPOF8.910e-4278.57Sm protein F n=1 Tax=Asparagus officinalis TaxID=4... [more]
A0A200QAB0_9MAGN1.080e-4179.76Sm protein F n=1 Tax=Macleaya cordata TaxID=56857 ... [more]
A0A2N9FFJ8_FAGSY1.090e-4177.38Sm protein F n=2 Tax=Fagaceae TaxID=3503 RepID=A0A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 4.4E-23
score: 92.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..72
e-value: 3.7E-20
score: 71.4
IPR016487Sm-like protein Lsm6/SmFPIRSFPIRSF006609snRNP_SmFcoord: 1..83
e-value: 4.2E-37
score: 123.0
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..81
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 1.5E-30
score: 106.5
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN POLYPEPTIDE Fcoord: 1..81
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig137contigE-siliculosus-1a_F_contig137:55376..58568 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig137.2214.1mRNA_E-siliculosus-1a_F_contig137.2214.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig137 55131..58584 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig137.2214.1 ID=prot_E-siliculosus-1a_F_contig137.2214.1|Name=mRNA_E-siliculosus-1a_F_contig137.2214.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEY
VDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEGANGMDEEEDEG
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR016487Lsm6/sSmF
IPR001163LSM_dom_euk/arc