mRNA_E-siliculosus-1a_F_contig1369.2197.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1369.2197.1 vs. uniprot
Match: A0A6H5L6Q5_9PHAE (SREBP regulating gene protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q5_9PHAE) HSP 1 Score: 536 bits (1381), Expect = 6.050e-183 Identity = 445/559 (79.61%), Postives = 454/559 (81.22%), Query Frame = 3
Query: 138 MDATPRFRLFDNRRGSSNQMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AACGAGVLASARLLARASLSYYSSWPSSSSLPGYLHSSGAGSADXXXXXXXXXXXXXDRHKH---RRPAVSLGPDAIPSVLLVERGPSGLPSGPALPGGARKASSLVDAAGAVPGXXXXXXXXXXXXXXRDNRSNPYRCRNTVQGATLVADSEGRVCHRAELAVEEGDDDDVRHRPGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSVPTTTRTQTRRGGEGGVGVELVAL---AHGXXXXXXXXXX-----EEALSTPFSCWSCDVGEDGPSGSNGGVNDSPSFSSCCSSYEFCVSCCQNPQRGEEREAIQASAALSGHPAYRDLLGSGNNDAANRRXXXXXRQLRASAAAAEAGAVEKSEXXXAEERDARELAFAHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAASAAAAALPGGWGGVVEGGESRGAPPLQLDPLLFGLAEP 1778
MDATPRFRLFDNRRGSSNQMD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AACGAGVLASARLLARASLSY SSWPSSSSLPGYLHSSGAGS DXXXXXXXXXXXXX RRPAVSLGPDAIPSVLLVERGPSGLPSGPALPGGARKASSLVD GAV G R+N SNPYRCRNTVQGATLVADSEGRVCHRAEL VEEGDD VRHRPG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P S P TTRT+TRRG EGGV VELV L AHGXXXXXXXXXX EEALSTPFSCWSCDVGEDGPSG+ SSYEFCVSCCQNPQRG+EREAIQASAALSGHPAYRDLLG GNNDA+NRR RQL+AS AAAEAG VEKS+ AEERDARE+AFAHCAFRCRTYSGSV HENSYRSPLKHCFGRFRPPAASAAAAALPGG GVVEG ESRGAPP Q+DPLLF LAEP
Sbjct: 1 MDATPRFRLFDNRRGSSNQMDEEAGQATATLPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAACGAGVLASARLLARASLSY-SSWPSSSSLPGYLHSSGAGSTDXXXXXXXXXXXXXXXXXXXXXRRPAVSLGPDAIPSVLLVERGPSGLPSGPALPGGARKASSLVDVTGAVLGDGGGGGEIRGGEG-RENSSNPYRCRNTVQGATLVADSEGRVCHRAELIVEEGDDXXVRHRPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKHKHPPAA------PHSGPATTRTETRRGVEGGVSVELVELGELAHGXXXXXXXXXXXXFPPEEALSTPFSCWSCDVGEDGPSGNXXXXXXXXXXXXXXSSYEFCVSCCQNPQRGKEREAIQASAALSGHPAYRDLLGPGNNDASNRRELPPPRQLQASHAAAEAG-VEKSQEE-AEERDAREMAFAHCAFRCRTYSGSVVHENSYRSPLKHCFGRFRPPAASAAAAALPGGRAGVVEGRESRGAPPHQVDPLLFDLAEP 549
BLAST of mRNA_E-siliculosus-1a_F_contig1369.2197.1 vs. uniprot
Match: D7FXG4_ECTSI (SREBP regulating gene protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG4_ECTSI) HSP 1 Score: 505 bits (1300), Expect = 1.090e-170 Identity = 441/554 (79.60%), Postives = 445/554 (80.32%), Query Frame = 3
Query: 138 MDATPRFRLFDNRRGSS-NQMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA----CGAGVLASARLLARASLSYYSSWPSSSSLPGYLHSSGAGSADXXXXXXXXXXXXXDRHKHRRPAVSLGPDAIPSVLLVERGPSGLPSGPALPGGARKASSLVDAAGAVPGXXXXXXXXXXXXXXRDNRSNPYRCRNTVQGATLVADSEGRVCHRAELAVEEGDDDDVRHRPGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSVPTTTRTQTRRGGEGGVGVELVALAHGXXXXXXXXXX-EEALSTPFSCWSCDVGEDGPSGSNGGVNDSPSFSSCCSSYEFCVSCCQNPQRGEEREAIQASAALSGHPAYRDLLGSGNNDAANRRXXXXXRQLRASAAAAEAGAVEKS-EXXXAEERDARELAFAHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAASAAAAALPGGWGGVVEGGESRGAPPLQLDPLLFGLAEP 1778
MDATPRFRLFDNRRGSS NQMD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGAGVLASARLLARAS S+ SSWPSSSS PGYLHSSGAG XXXXXXXXXXXXX RRPAVSLGPDAIPSVLLVERGPSGLPSGPALPGGARKASSLVD AGAVPG R+N SNPYRCRNTVQGATLVADSEGRVCHRAEL VEEGD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX EEALSTPFSCWSCDVGEDGPSGSNGG NDSPSFSSCCSSYEFCVSCCQNPQRGEEREAIQASAALSGHPAYRDLLGSGNNDAAN R XXX EAG VEK+ + AEERDARELAFAHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAASAAAAALPGGWGGVVEGGESRGAPPLQLDPLLF LAEP
Sbjct: 1 MDATPRFRLFDNRRGSSINQMDEEAGRQTATTLPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAGVLASARLLARASSSH-SSWPSSSSAPGYLHSSGAGXXXXXXXXXXXXXXXXXXXXXRRPAVSLGPDAIPSVLLVERGPSGLPSGPALPGGARKASSLVDPAGAVPGGGGGETRGGRG---RENSSNPYRCRNTVQGATLVADSEGRVCHRAELVVEEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEALSTPFSCWSCDVGEDGPSGSNGGGNDSPSFSSCCSSYEFCVSCCQNPQRGEEREAIQASAALSGHPAYRDLLGSGNNDAANGREPXXXXXXXXXXXXXEAGGVEKNGQQVEAEERDARELAFAHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAASAAAAALPGGWGGVVEGGESRGAPPLQLDPLLFALAEP 550
BLAST of mRNA_E-siliculosus-1a_F_contig1369.2197.1 vs. uniprot
Match: T0QMQ3_SAPDV (SREBP regulating gene protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QMQ3_SAPDV) HSP 1 Score: 62.0 bits (149), Expect = 1.140e-6 Identity = 49/157 (31.21%), Postives = 57/157 (36.31%), Query Frame = 3
Query: 1191 ALSTPFSCWSCDVGEDGPSGSNGGVNDSPSFSSCCSSYEFCVSCCQNPQRGE--EREAIQASAALSGHPAYRDLLGSGNNDAANRRXXXXXRQLRASAAAAEAGAVEKSEXXXAEERDARELAFAHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRP 1655
A + FSC SC+V + CCS YE CVSCC +P E + A+ A HP Y GA F CAFRCRT S SV H+NSYRS KHC+G RP
Sbjct: 207 ASTVTFSCTSCNV----------------AAPHCCSEYERCVSCCMSPDHREILRHFLLHANPA---HPVY--------------------------------GAPHHLSV------------FGFCAFRCRTSSASVQHQNSYRSTKKHCYGLHRP 300
BLAST of mRNA_E-siliculosus-1a_F_contig1369.2197.1 vs. uniprot
Match: A0A067CTZ4_SAPPC (SREBP regulating gene protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTZ4_SAPPC) HSP 1 Score: 59.7 bits (143), Expect = 6.450e-6 Identity = 47/155 (30.32%), Postives = 57/155 (36.77%), Query Frame = 3
Query: 1197 STPFSCWSCDVGEDGPSGSNGGVNDSPSFSSCCSSYEFCVSCCQNPQRGEEREAIQASA--ALSGHPAYRDLLGSGNNDAANRRXXXXXRQLRASAAAAEAGAVEKSEXXXAEERDARELAFAHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRP 1655
++ FSC SC S + CCS+YE CVSCC P + RE ++ A HP Y GA F CAFRCR+ S SV H+NSYRS KHC+G RP
Sbjct: 207 ASAFSCTSC----------------SAAAPHCCSAYERCVSCCMGP---DHREMVRHFLLHATPAHPVY--------------------------------GAPHHLSV------------FGFCAFRCRSSSASVQHQNSYRSSRKHCYGLHRP 298
BLAST of mRNA_E-siliculosus-1a_F_contig1369.2197.1 vs. uniprot
Match: A0A7S3UXD3_HETAK (SREBP regulating gene protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXD3_HETAK) HSP 1 Score: 58.5 bits (140), Expect = 1.630e-5 Identity = 36/126 (28.57%), Postives = 49/126 (38.89%), Query Frame = 3
Query: 1278 SFSSCCSSYEFCVSCCQNPQRGEEREAIQASAALSGHPAYRDLLGSGNNDAANRRXXXXXRQLRASAAAAEAGAVEKSEXXXAEERDARELAFAHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRP 1655
S S CC YE CVSCC +P R+ ++ + S H Y+ L F C ++CRT SGSV +ENSYR+P+K+C+G P
Sbjct: 105 SGSHCCQEYEMCVSCCMDPAN---RDVLEKFKSQSTHFVYQHTP----------------------------------------------LGFEFCRYKCRTSSGSVQNENSYRNPVKYCYGELLP 181 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1369.2197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1369.2197.1 >prot_E-siliculosus-1a_F_contig1369.2197.1 ID=prot_E-siliculosus-1a_F_contig1369.2197.1|Name=mRNA_E-siliculosus-1a_F_contig1369.2197.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=548bp MDATPRFRLFDNRRGSSNQMDEEAGQTTTLPRRRMLTSSVAVARQRRRNRback to top mRNA from alignment at E-siliculosus-1a_F_contig1369:5333..7490- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1369.2197.1 ID=mRNA_E-siliculosus-1a_F_contig1369.2197.1|Name=mRNA_E-siliculosus-1a_F_contig1369.2197.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2158bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1369:5333..7490- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1369:5333..7490- >mRNA_E-siliculosus-1a_F_contig1369.2197.1 ID=mRNA_E-siliculosus-1a_F_contig1369.2197.1|Name=mRNA_E-siliculosus-1a_F_contig1369.2197.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1369:5333..7490- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |