mRNA_E-siliculosus-1a_F_contig13676.2194.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: D7G0Q0_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q0_ECTSI) HSP 1 Score: 135 bits (341), Expect = 3.420e-36 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query: 22 WRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEK 216
WRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEK
Sbjct: 313 WRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEK 377
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A7S2UT53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT53_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.930e-34 Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESE 213
VLNDFYE+RF+PL +P PTL D+R L+NNRELSDVTFIVDGFPVYASR HLA+RSEHFRAMLYGGMRES+
Sbjct: 34 VLNDFYEYRFEPLNIPGPTLINDLRSLINNRELSDVTFIVDGFPVYASRAHLAVRSEHFRAMLYGGMRESQ 104
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A7S2WPN5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPN5_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.730e-25 Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
VLND+YE+R +P+ +P T DMR LVNNRELSDVTF+V+G VYASR+HLA RSEHFRAML+GGMRES
Sbjct: 337 VLNDYYEYRLEPVWIPESTYVTDMRTLVNNRELSDVTFLVEGQAVYASRIHLAARSEHFRAMLFGGMRES 406
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A7R9UG27_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG27_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.640e-24 Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
VLNDFYE+RFQ L + P +MR LVNN+ SDVTFIVDG P+YA+R HLA R EHFRAMLYG MRE+
Sbjct: 47 VLNDFYEYRFQHLSIAPSAFLSEMRSLVNNQMFSDVTFIVDGIPIYATRAHLAARCEHFRAMLYGEMREA 116
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A835YYB0_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB0_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.670e-23 Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1
Query: 31 QPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESE 213
+PLLVPP TL D+R +VN RELSDVTF+VDGFPV+ASR HLA RSEHFRAMLYGG+RES+
Sbjct: 331 EPLLVPPSTLAADLRGMVNCRELSDVTFLVDGFPVFASRAHLAARSEHFRAMLYGGLRESQ 391
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A8J9S1L4_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S1L4_PHATR) HSP 1 Score: 90.9 bits (224), Expect = 8.580e-21 Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
VLNDFY++R +P+L+PPPTL D +++NN +LSDV F+V+G V+A R LA RSE+FR ML GGMRES
Sbjct: 41 VLNDFYKFRLKPILMPPPTLVNDFSRMINNPDLSDVRFLVEGKDVFAHRSVLAFRSEYFRVMLCGGMRES 110
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: B7FP97_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP97_PHATC) HSP 1 Score: 90.9 bits (224), Expect = 9.940e-20 Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
VLNDFY++R +P+L+PPPTL D +++NN +LSDV F+V+G V+A R LA RSE+FR ML GGMRES
Sbjct: 307 VLNDFYKFRLKPILMPPPTLVNDFSRMINNPDLSDVRFLVEGKDVFAHRSVLAFRSEYFRVMLCGGMRES 376
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A7S1U372_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U372_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.550e-19 Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1
Query: 34 PLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
P+ +PP +L D+R L+NN++ SDVTFIV G PVYA+R HLA RSEHFRAMLYGGMRE+
Sbjct: 331 PVAIPPSSLVADLRSLINNKDFSDVTFIVGGEPVYATRAHLAARSEHFRAMLYGGMREA 389
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: A0A6U6MZ52_9DINO (Hypothetical protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U6MZ52_9DINO) HSP 1 Score: 87.8 bits (216), Expect = 1.250e-18 Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 1
Query: 28 FQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
F+P+L+PP L +D+RKL+NN +DVTF+V+ VYA+R HLA RSEHFRA+LYGGMRES
Sbjct: 331 FEPVLIPPSILMDDLRKLINNPMFADVTFLVENQTVYATRAHLASRSEHFRALLYGGMRES 391
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Match: B8C0A8_THAPS (BTB domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0A8_THAPS) HSP 1 Score: 85.5 bits (210), Expect = 8.180e-18 Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 1 VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 210
VLNDFY++R +P+ +PP L D+R+L+ ++SDVTFIV+G V+A+R LA+RSE+F ML+GGMRES
Sbjct: 283 VLNDFYKFRLKPVSIPPSALVSDLRRLMIREDMSDVTFIVEGQEVFANRALLAVRSEYFDVMLFGGMRES 352 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13676.2194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13676.2194.1 >prot_E-siliculosus-1a_F_contig13676.2194.1 ID=prot_E-siliculosus-1a_F_contig13676.2194.1|Name=mRNA_E-siliculosus-1a_F_contig13676.2194.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp VLNDFYEWRFQPLLVPPPTLQEDMRKLVNNRELSDVTFIVDGFPVYASRVback to top mRNA from alignment at E-siliculosus-1a_F_contig13676:922..1137- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13676.2194.1 ID=mRNA_E-siliculosus-1a_F_contig13676.2194.1|Name=mRNA_E-siliculosus-1a_F_contig13676.2194.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13676:922..1137- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13676:922..1137- >mRNA_E-siliculosus-1a_F_contig13676.2194.1 ID=mRNA_E-siliculosus-1a_F_contig13676.2194.1|Name=mRNA_E-siliculosus-1a_F_contig13676.2194.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13676:922..1137- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |