mRNA_E-siliculosus-1a_F_contig10249.219.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10249.219.1
Unique NamemRNA_E-siliculosus-1a_F_contig10249.219.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: D7FZ17_ECTSI (Domain repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ17_ECTSI)

HSP 1 Score: 490 bits (1261), Expect = 4.560e-170
Identity = 241/247 (97.57%), Postives = 243/247 (98.38%), Query Frame = 1
Query:    1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            GRNDWGQLGKGDFLDRGDDP TMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYV+LG GVE ISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGG+VKCWGDNRSGQLGLGHVDTIGDDP EMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC
Sbjct:  112 GRNDWGQLGKGDFLDRGDDPATMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVNLGTGVEMISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGSVKCWGDNRSGQLGLGHVDTIGDDPFEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 358          
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A6H5L5B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B3_9PHAE)

HSP 1 Score: 496 bits (1276), Expect = 6.260e-169
Identity = 243/247 (98.38%), Postives = 246/247 (99.60%), Query Frame = 1
Query:    1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            GRNDWGQLGKGDFLDRGDDP TMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGV+AISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDN+QEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESH+CAILGDGSTRC
Sbjct:  150 GRNDWGQLGKGDFLDRGDDPATMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVQAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNLQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHSCAILGDGSTRC 396          
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A382THL9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382THL9_9ZZZZ)

HSP 1 Score: 222 bits (566), Expect = 6.190e-69
Identity = 124/242 (51.24%), Postives = 155/242 (64.05%), Query Frame = 1
Query:   16 GQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            GQLG+G     GD P  MG+NL AVDLGT  +      A AI TG+  TC L+  G VKC+G N  GQ G+G+  +  G  G  +MGDNL  VDLG G  A ++S GT   CA L  G VKCWG N+ G LG G +  +GD++ +MGDN+  VDLGTG+T   +A G  + CA L  G +KCWG+N  GQLG GH + +GDDP EMGD+L  VDLG G TAT+LS G +HTCA+L D S +C
Sbjct:    3 GQLGQGHRNSLGDGPGEMGDNLAAVDLGTGKT------ATAIATGEADTCALLNDGTVKCWGSNGYGQLGQGHSRSLGGDPG--EMGDNLAAVDLGTGKSATAISGGTHFFCALLNDGTVKCWGRNNGGRLGQGHTNRIGDQDGEMGDNLAAVDLGTGKTATAIAAGNGYVCATLNDGTLKCWGENDLGQLGQGHANFLGDDPGEMGDNLAAVDLGTGKTATALSAGYNHTCALLNDNSVKC 236          
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A7C1YL65_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YL65_9ACTN)

HSP 1 Score: 221 bits (563), Expect = 5.980e-65
Identity = 121/247 (48.99%), Postives = 155/247 (62.75%), Query Frame = 1
Query:    1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            G N  GQLG+GD  DRGD+P  MG NL AVDLG   +      A AIT G   TC L++   VKC+G N  GQ G+G+ ++  G  G  +MGDNLP ++L  G  A ++S+    TCA L  G VKCWG N  GGLG G + ++GD   +MG+N+  +DLG G T   +  G  H CA+L    VKCWGDN  GQLG G  D IGD+P EMGD+LP VDLGAG TAT+++ G  HTCA+L + + +C
Sbjct:   69 GSNSSGQLGQGDNTDRGDNPGEMGANLPAVDLGAGRT------ATAITAGTNHTCALLDNDTVKCWGNNVLGQLGQGDANSRGGDPG--EMGDNLPTINLSRGGTATAISTSGVHTCALLHNGTVKCWGYNLNGGLGQGHTDDIGDNPGEMGNNLPPIDLGAGRTATAITAGDSHTCALLDNSTVKCWGDNSYGQLGQGTTDDIGDNPGEMGDNLPPVDLGAGRTATAITAGSFHTCALLDNNTVKC 307          
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A150G0E4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G0E4_GONPE)

HSP 1 Score: 206 bits (523), Expect = 5.740e-62
Identity = 116/247 (46.96%), Postives = 149/247 (60.32%), Query Frame = 1
Query:    1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            GR   GQLG GD  +RGD+P  MG+NL  VDLGT  +      AV +  G   TC +++ G  KC+G N+  Q G G  DTN   +   +MGD+LP+VDLG G  A++++ G   TCA L  G  KCWG +S G LG GD+   GD   +MGD++  VDLGTG T   +  G  H+CA+L     KCWG    GQLG G ++T GD P EMGD+LPYVDLG G TA +L+ G  H CAIL +   +C
Sbjct:   54 GRAANGQLGYGDTNNRGDNPGEMGDNLPFVDLGTGRT------AVVLAGGHYHTCAVLDNGRAKCWGWNNAAQLGYG--DTNNRGDNPGEMGDSLPFVDLGTGRTAVAMAGGELHTCAVLDNGRAKCWGVSSLGQLGYGDTSIRGDNPGEMGDSLPYVDLGTGRTAVVITAGTYHSCAVLDNARAKCWGPYYFGQLGYGDLNTRGDGPGEMGDNLPYVDLGTGRTAVALATGAYHNCAILDNRRVKC 292          
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN)

HSP 1 Score: 214 bits (546), Expect = 9.110e-62
Identity = 119/242 (49.17%), Postives = 153/242 (63.22%), Query Frame = 1
Query:   16 GQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            G+LG+G     GD     G+ L  VDLGT  +      A AI  GQQ+TC L++ G VKC+G N  GQ G+GN D ++G N  E MGDNLP VDLG G  A ++S+G++ TCA L  G VKCWG  S+G LG GD    GD   +MGDN+  ++LGTG T   V+ G  H CA+L  G VKCWG   +GQLG G V  +GD+P EMGD+LP VDLG+G TA +++ G   +CA+L DG  +C
Sbjct:  139 GRLGQGSTDTIGDSTAERGDGLPTVDLGTGRT------ATAIAAGQQYTCALLDDGTVKCWGNNSSGQLGQGNTD-DIGDNPGE-MGDNLPAVDLGTGRTATAISAGSSHTCALLDDGTVKCWGSGSFGRLGYGDLTKRGDGAGEMGDNLPPLELGTGRTATAVSAGNTHTCALLDDGTVKCWGGGFNGQLGTGDVTGLGDNPGEMGDNLPPVDLGSGRTAIAIAAGSRASCAVLDDGGVKC 372          
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A830HVT6_9CHLO (EGF-like domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HVT6_9CHLO)

HSP 1 Score: 211 bits (537), Expect = 2.780e-61
Identity = 116/247 (46.96%), Postives = 148/247 (59.92%), Query Frame = 1
Query:    1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            G N  GQLG GD + RGD P TMG+NL  VD+GT  +         IT G   TC +++   VKC+G N  G+ G G  DTN   +G  +MGDNLPYVD+G G     +S+G++ TCA L    +KCWG N  G LG+GD+   GD  ++MGDN+  VD+GTG T   ++    H CAIL    VKCWG N  GQLG G   T GD P+EMGD+LPYVD+G G T   + +   HTCAIL +   +C
Sbjct:  165 GNNGNGQLGYGDTIQRGDIPNTMGDNLPYVDVGTGRT------VKQITAGSSHTCAILDDDKVKCWGSNHNGELGYG--DTNRRGDGPNEMGDNLPYVDVGTGRTVKQISAGSSYTCAILDNDKLKCWGSNYAGALGIGDTMQRGDGPNEMGDNLPYVDVGTGRTVKQISVSGSHTCAILDDDKVKCWGYNYVGQLGYGDTTTRGDGPNEMGDNLPYVDVGTGRTVKQIEVSGGHTCAILDNDKLKC 403          
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A0K1ECX1_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1ECX1_CHOCO)

HSP 1 Score: 207 bits (528), Expect = 5.320e-61
Identity = 120/247 (48.58%), Postives = 146/247 (59.11%), Query Frame = 1
Query:    1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            G N  GQLG GD   RG+ P  MG  L A +LGT       + AVA+  G   +C L+ GG VKC+G N+ GQ G G  D     N   +MGD LP VDLGAG  A ++ +G   +CA L  GGVKCWG N  G LG+GD    GD+  +MGD +  VD               H CA+L  G VKCWGDNRSG+LGLG V+  GDD  EMGD LP VDLGAG  A +++ GE+HTCA+LGD S +C
Sbjct:   69 GDNWVGQLGIGDTRTRGEGPGQMGTRLPAAELGTG------SAAVAVAAGAWHSCALLHGGSVKCWGFNEYGQLGVG--DYRNRGNDPGEMGDALPAVDLGAGKTATAIVAGAWHSCALLHDGGVKCWGDNQSGQLGLGDVEARGDDAGEMGDGLPAVDXXXXXXXXXXXXXXXHTCALLGDGGVKCWGDNRSGRLGLGDVEARGDDAGEMGDSLPAVDLGAGQAAVAIAAGEAHTCALLGDQSVKC 307          
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: L7UHS0_MYXSD (RCC1 repeat-containing protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) TaxID=1278073 RepID=L7UHS0_MYXSD)

HSP 1 Score: 205 bits (521), Expect = 6.110e-61
Identity = 121/247 (48.99%), Postives = 149/247 (60.32%), Query Frame = 1
Query:    1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            GRN  GQLG GD ++RG  P  M + L  VDLG         VA A+ TG +  C ++E G VKC+G N  GQ G G    +  S G   MGD LP V+LG    A ++++G A +CA L  G VKCWGGN YG LG+GD  + G E D+MGD + EV LG G T   +A G  H CAIL  G VKCWGDN  G+LGLG     GD P EMGD LP VDLG G TA ++SLG  ++CA+L D + +C
Sbjct:   39 GRNTEGQLGLGDTVNRGAGPREMDDALAFVDLGVG------RVAKALATGYEHACAILEDGAVKCWGYNMNGQLGLGVRSNHGDSQGS--MGDALPTVNLGTKRTAKAITAGRAHSCAILDDGAVKCWGGNEYGQLGLGDKASRGVEPDEMGDALPEVKLGVGRTATAIAAGNLHTCAILDDGAVKCWGDNGYGRLGLGDKSGRGDAPGEMGDALPSVDLGTGRTAKAISLGYYYSCALLDDDTLKC 277          
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A520PN85_9PROT (Big_5 domain-containing protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A520PN85_9PROT)

HSP 1 Score: 211 bits (536), Expect = 7.550e-61
Identity = 114/247 (46.15%), Postives = 151/247 (61.13%), Query Frame = 1
Query:    1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741
            G+ND GQLG+G+    GD  + MG+NLT +DLGT  +      A AI  G    C +++   +KC+G N  GQ G G+ D     +G  +MGDNLP +DLG G  A ++++G A +CA L    VKCWG N  G LG+GD+ N GD  D+MGD++  VDLGTG T   +  G  H CA+L   +VKCWGD   GQ+G G    +GD   EMGD L  +DLG G TAT++S G SHTCA+L + S +C
Sbjct:  269 GKNDRGQLGQGNTNSLGDAGSEMGDNLTPIDLGTGRT------ATAIAGGGWHNCAILDNSSIKCWGINSAGQLGIGSTDDR--GDGANEMGDNLPSIDLGTGRTATAIAAGGAHSCAILDNSAVKCWGKNDAGQLGLGDTNNRGDGADEMGDDLDAVDLGTGRTAVSITAGYAHTCALLDNYSVKCWGDAAEGQMGTGKTFDLGDAAGEMGDSLTAIDLGTGRTATAISAGRSHTCAMLDNSSIKC 507          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ17_ECTSI4.560e-17097.57Domain repeat protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L5B3_9PHAE6.260e-16998.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A382THL9_9ZZZZ6.190e-6951.24Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7C1YL65_9ACTN5.980e-6548.99Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A150G0E4_GONPE5.740e-6246.96Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7C1YRK2_9ACTN9.110e-6249.17Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A830HVT6_9CHLO2.780e-6146.96EGF-like domain-containing protein n=1 Tax=Pycnoco... [more]
A0A0K1ECX1_CHOCO5.320e-6148.58Uncharacterized protein n=1 Tax=Chondromyces croca... [more]
L7UHS0_MYXSD6.110e-6148.99RCC1 repeat-containing protein n=1 Tax=Myxococcus ... [more]
A0A520PN85_9PROT7.550e-6146.15Big_5 domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10249contigE-siliculosus-1a_F_contig10249:457..2290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size753
Model size753
Exons4
Ec32 orthologEc-20_001190.1
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.DZ
EggNOG OGsCOG5184@1,KOG1426@2759
EggNOG free text desc.guanyl-nucleotide exchange factor activity
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Preferred nameRCCD1
Seed eggNOG ortholog2880.D7FZ17
Seed ortholog evalue6.1e-137
Seed ortholog score493.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10249.219.1prot_E-siliculosus-1a_F_contig10249.219.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10249 457..2290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.3157215-CDS-E-siliculosus-1a_F_contig10249:456..6481622927528.3157215-CDS-E-siliculosus-1a_F_contig10249:456..648Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10249 457..648 +
1696318569.2573571-CDS-E-siliculosus-1a_F_contig10249:456..6481696318569.2573571-CDS-E-siliculosus-1a_F_contig10249:456..648Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10249 457..648 +
1622927528.3306956-CDS-E-siliculosus-1a_F_contig10249:967..12461622927528.3306956-CDS-E-siliculosus-1a_F_contig10249:967..1246Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10249 968..1246 +
1696318569.269528-CDS-E-siliculosus-1a_F_contig10249:967..12461696318569.269528-CDS-E-siliculosus-1a_F_contig10249:967..1246Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10249 968..1246 +
1622927528.345544-CDS-E-siliculosus-1a_F_contig10249:1620..17071622927528.345544-CDS-E-siliculosus-1a_F_contig10249:1620..1707Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10249 1621..1707 +
1696318569.2858436-CDS-E-siliculosus-1a_F_contig10249:1620..17071696318569.2858436-CDS-E-siliculosus-1a_F_contig10249:1620..1707Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10249 1621..1707 +
1622927528.360863-CDS-E-siliculosus-1a_F_contig10249:2095..22901622927528.360863-CDS-E-siliculosus-1a_F_contig10249:2095..2290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10249 2096..2290 +
1696318569.3042169-CDS-E-siliculosus-1a_F_contig10249:2095..22901696318569.3042169-CDS-E-siliculosus-1a_F_contig10249:2095..2290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10249 2096..2290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10249.219.1

>prot_E-siliculosus-1a_F_contig10249.219.1 ID=prot_E-siliculosus-1a_F_contig10249.219.1|Name=mRNA_E-siliculosus-1a_F_contig10249.219.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=251bp
GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTG
QQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDL
GAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDD
MGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGH
VDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRCVVG
*
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mRNA from alignment at E-siliculosus-1a_F_contig10249:457..2290+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10249.219.1 ID=mRNA_E-siliculosus-1a_F_contig10249.219.1|Name=mRNA_E-siliculosus-1a_F_contig10249.219.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1834bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10249:457..2290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTCGCAACGACTGGGGCCAGCTTGGCAAGGGAGATTTTCTCGACCGCGG GGACGACCCCACTACCATGGGTAACAACCTCACGGCCGTTGATCTCGGCA CTGCGCCGTCCGGGAACGGCACAGCGGTAGCCGTCGCGATCACGACGGGC CAGCAGTTCACCTGCGTGCTTGTGGAGGGCGGCGGCGTCAAGGTAACGCC TTTTTTTTTTTTTTGCTTGGGTGAAACGGCCATGTTTTTGTTGCGGCTCT TGTTTTGAGTGACATGGCTATATTTCTGGGGGCTTTTGATGCCTTTGTGG ACTCATCGTTCTTACATAGTCTTTACTCCTTTGTGTTTTTTATTTAGTTT TCTGCTCTTGGAAGCGGGAAAATATTCAGAGCCGACTATCGATATCACCC GACTTTGACCAAAGCTGCTAGCTCTCTCGCCTTAAAAAAACGTCAACTCG GAACGTGTTGTTCACCGACCACCCTCCCCCTTTTTGCGTCGCGATGCCAT CCAACACCCAGTGCTTCGGGCGAAACGACGAGGGACAGTGCGGCCGCGGA AACCTGGACACGAACGTCGGCAGCAACGGTCTGGAGGACATGGGCGACAA CCTCCCTTACGTGGATCTCGGTGCCGGCGTGGAGGCGATATCGGTCTCTT CGGGCACCGCTTCCACCTGCGCCGCTCTCCTGGGAGGCGGGGTCAAGTGC TGGGGGGGGAACAGCTACGGTGGCCTTGGGGTCGGGGACTCGTACAATGT GGGTGATGAGGAAGACGACATGGGAGACAACGTCCAGGAGGTGCGTGTGT GTTGTTTGGTAGATGTGGTAGATCGTTGCGTATCCGGTTTCGTTGCGTTG GGTCTATTTTTATTTTTATTATTGGGTGGCGGTTGGTGGTGTTGCCATCT CTTGGCTTGCGGATTTTTAGGCTGGGGTGGGTGTTGTTTCGGCGTTGATG TGAACGAAGGTGGTATCGGCGGCCTACACGCGCTGCAAACATTGTCGTAC CTCGCGCCCCCATGAAGGAAGGTGACCTTAAGAATTGTCCCATCTCACCA CTATGGTGTATCGAGGACGATTCCCTTTTCTTGACACCCCGAGTCTATGT TCTCAACTCTTCCTTCCGACGCACGGCGCGCGACTTGCTCTTGGTCGATT TTGTGGTGGAACAGGTGGACCTCGGAACCGGCGAGACCGGCTACTACGTT GCGTACGGCCTCCGACACGCGTGCGCTATCCTGATGGGAGGCAACGTCAA GGTGAGTTTCTATTGAGCTTATTTATTCGTCGTGTTTTGGCTGGACTAGT TCCTCTCTCGGCGAAAGCAGTTGAAGCAACGCGACCTCGCCAATATGAAG CAGCAGCAGCGACACCAGCACTGGCAGGGGCATACGTCACTACGGTTTTA CGAAAGAACGGCGATGAAACATATGCATATATTCTTCGAAGTATGACGGA GTTTTTTTTTTTTTCGTAGTTCTATTGGTTTTAGGATGGAAGGGACACAT CAAATTTGTCTTATTTATTTCGGGAAGAATGTATCAGAGATGAGTCGCCC CTTCGCATGGATGCAAATGACCCTCCGCCCTTCCCGTCTCTCACGTCTGG CGCACTTAATTTTCTCGCAAACCACTTGTACAACAACAGTGCTGGGGGGA CAACAGGTCTGGGCAGCTGGGCCTAGGGCACGTCGATACCATCGGCGACG ACCCGTCCGAGATGGGGGATGACCTGCCCTACGTCGATCTCGGTGCAGGG AACACGGCCACGTCGCTGTCCCTAGGAGAGAGTCACACCTGCGCCATTCT GGGGGATGGCAGCACCAGGTGCGTCGTTGGGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10249:457..2290+

>mRNA_E-siliculosus-1a_F_contig10249.219.1 ID=mRNA_E-siliculosus-1a_F_contig10249.219.1|Name=mRNA_E-siliculosus-1a_F_contig10249.219.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10249:457..2290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTCGCAACGACTGGGGCCAGCTTGGCAAGGGAGATTTTCTCGACCGCGG
GGACGACCCCACTACCATGGGTAACAACCTCACGGCCGTTGATCTCGGCA
CTGCGCCGTCCGGGAACGGCACAGCGGTAGCCGTCGCGATCACGACGGGC
CAGCAGTTCACCTGCGTGCTTGTGGAGGGCGGCGGCGTCAAGGGTCGCAA
CGACTGGGGCCAGCTTGGCAAGGGAGATTTTCTCGACCGCGGGGACGACC
CCACTACCATGGGTAACAACCTCACGGCCGTTGATCTCGGCACTGCGCCG
TCCGGGAACGGCACAGCGGTAGCCGTCGCGATCACGACGGGCCAGCAGTT
CACCTGCGTGCTTGTGGAGGGCGGCGGCGTCAAGTGCTTCGGGCGAAACG
ACGAGGGACAGTGCGGCCGCGGAAACCTGGACACGAACGTCGGCAGCAAC
GGTCTGGAGGACATGGGCGACAACCTCCCTTACGTGGATCTCGGTGCCGG
CGTGGAGGCGATATCGGTCTCTTCGGGCACCGCTTCCACCTGCGCCGCTC
TCCTGGGAGGCGGGGTCAAGTGCTGGGGGGGGAACAGCTACGGTGGCCTT
GGGGTCGGGGACTCGTACAATGTGGGTGATGAGGAAGACGACATGGGAGA
CAACGTCCAGGAGTGCTTCGGGCGAAACGACGAGGGACAGTGCGGCCGCG
GAAACCTGGACACGAACGTCGGCAGCAACGGTCTGGAGGACATGGGCGAC
AACCTCCCTTACGTGGATCTCGGTGCCGGCGTGGAGGCGATATCGGTCTC
TTCGGGCACCGCTTCCACCTGCGCCGCTCTCCTGGGAGGCGGGGTCAAGT
GCTGGGGGGGGAACAGCTACGGTGGCCTTGGGGTCGGGGACTCGTACAAT
GTGGGTGATGAGGAAGACGACATGGGAGACAACGTCCAGGAGGTGGACCT
CGGAACCGGCGAGACCGGCTACTACGTTGCGTACGGCCTCCGACACGCGT
GCGCTATCCTGATGGGAGGCAACGTCAAGGTGGACCTCGGAACCGGCGAG
ACCGGCTACTACGTTGCGTACGGCCTCCGACACGCGTGCGCTATCCTGAT
GGGAGGCAACGTCAAGTGCTGGGGGGACAACAGGTCTGGGCAGCTGGGCC
TAGGGCACGTCGATACCATCGGCGACGACCCGTCCGAGATGGGGGATGAC
CTGCCCTACGTCGATCTCGGTGCAGGGAACACGGCCACGTCGCTGTCCCT
AGGAGAGAGTCACACCTGCGCCATTCTGGGGGATGGCAGCACCAGGTGCG
TCGTTGGGTAGTGCTGGGGGGACAACAGGTCTGGGCAGCTGGGCCTAGGG
CACGTCGATACCATCGGCGACGACCCGTCCGAGATGGGGGATGACCTGCC
CTACGTCGATCTCGGTGCAGGGAACACGGCCACGTCGCTGTCCCTAGGAG
AGAGTCACACCTGCGCCATTCTGGGGGATGGCAGCACCAGGTGCGTCGTT
GGGTAG
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