mRNA_E-siliculosus-1a_F_contig1024.214.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: A0A6H5JFG1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFG1_9PHAE) HSP 1 Score: 587 bits (1513), Expect = 4.850e-209 Identity = 319/347 (91.93%), Postives = 328/347 (94.52%), Query Frame = 2 Query: 62 MVASRSLATLCLLACSCGGVLGFRPQAGTIGRSRWTGDHDVVCETSSAKTSASAALWPSSSRSTRHAARGLTMQQTDEEARRTKLRLRV-EAESPFRKVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNVVVDVTAIVVSVGLVKRDLDAQEGRMARMEIGAKLAGLKVRLQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGAALETSDILIVPLVLESRPGMTGGGADMFRASGAENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
MVASR+L TLCLLACSCGG LGFRPQA TIG SRWTGDHDVVCETSS KTSASAALWPSSSRSTR AARGLTMQQTDEEARRTKLRLR + + +VRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTN+VVDVTA+ V VGLVKRDLDAQEGRMARMEIGAKLAGLKVRLQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAE VKSSLESALPYG ALETSDILIVPLVLESR G TGGGADMFRASGAE+DLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDP+KEGFSLV+KKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI
Sbjct: 1 MVASRALVTLCLLACSCGGALGFRPQARTIGGSRWTGDHDVVCETSSGKTSASAALWPSSSRSTRRAARGLTMQQTDEEARRTKLRLRQRKVVNSQVQVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNIVVDVTAMAVFVGLVKRDLDAQEGRMARMEIGAKLAGLKVRLQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAETVKSSLESALPYGKALETSDILIVPLVLESRSGTTGGGADMFRASGAESDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPLKEGFSLVVKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 347
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: A0A835ZF95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF95_9STRA) HSP 1 Score: 286 bits (733), Expect = 1.230e-91 Identity = 153/271 (56.46%), Postives = 191/271 (70.48%), Query Frame = 2 Query: 287 TDEEARRTKLRLRVEAESPFRKVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNVVVDVTAIVVSVGLVKRDLDAQEGRMARMEIGAKLAGLKVRLQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGAALETSDILIVPLVLESRPGMTGGGADMFRASGAENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
TDE+ + K+RLR E E+PFRKVR+F SFV S TVG L+A RTIALTQGIDQGQ+ EL N+ +D+ AI+ S L+KRDL AQ R+ RMEIGAKLAGLKVR Q + + +T+ LSA RR RGRDKRVA++VGGA+AV +SL +A+PY L+ +DI++VPL + LE AVG HVALPV LN WQE++D+EV TA QG D +++GF+++LKKNGR+G RSKGCPPW LVGDV R A MDTTNI
Sbjct: 38 TDEQMQ--KMRLREEVENPFRKVRLFFLYSFVASGTVGFLIAALRTIALTQGIDQGQAFPELAQNIGIDLAAIIGSALLIKRDLAAQNSRLVRMEIGAKLAGLKVRTQVESEEATIPLSAFRRQRGRDKRVAIVVGGADAVAASLSTAIPYSDELDRADIVLVPL----------------------SQLEEAVGQKHVALPVMLNSWQEWVDTEVATATGQGFDVLRDGFAVILKKNGRVGTRSKGCPPWNVLVGDVQARVAANMDTTNI 284
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: A0A7S3XN54_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN54_HETAK) HSP 1 Score: 210 bits (534), Expect = 3.130e-61 Identity = 119/263 (45.25%), Postives = 163/263 (61.98%), Query Frame = 2 Query: 311 KLRLRVEAESPFRKVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNVVVDVTAIVVSVGLVKRDLDAQEGRMARMEIGAKLAGLKVRLQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGAALETSDILIVPLVLESRPGMTGGGADMFRASGAENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
KLRLR E E+PFRKVR+F + + V SA+VG L+A TR +A G+ GQ + ELL NV +D+ A+V+ L++ + Q + RM GA++A L+VR Q + TLS RR RG DKR+ + VG E V+ SL A Y L +D+L +P+ + + G G R +G E+ +A G HVALP ALN+WQE+ SEVE AL+QG+D +G + V+KKNGR+G R+ G PPW +GDV R+ AGMD TNI
Sbjct: 70 KLRLREETENPFRKVRMFGYGAAVASASVGFLIAATRLLAKGTGVQGGQEVDELLQNVGIDLGAMVLFSVLLRNEYAVQAKILERMAQGARIASLRVRAQVEGTTKQATLSDFRRGRGMDKRLVIFVGSDEIVEKSLIEAEAYSEKLVQNDLLSIPVAIS----LDGDGK--LRCTGGESAAAAAAGRPHVALPAALNQWQEWAASEVEAALAQGVDVQGQGLTFVIKKNGRVGQRAVGSPPWRVFIGDVEDRQAAGMDVTNI 326
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: A0A0G4E9P3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4E9P3_VITBC) HSP 1 Score: 203 bits (517), Expect = 2.380e-59 Identity = 121/270 (44.81%), Postives = 169/270 (62.59%), Query Frame = 2 Query: 317 RLRVEAESPFRKVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNVVVDVTAIVVSVGLVKRDLDAQEGRMARMEIGAKLAGLKVRLQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGAALETSDILIVPLVLESRPGMTGGGADMFRASGA---------ENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
+LR E ESPFRKVR L+ + A V LVA T+TIA GI+ + + E N+ +DV AI V L +RDL +Q R R+ GAKLA L ++LQ DD + V+L+ LRR RGR+KRVA+++GG EAV+ SL+SA+P + L +D+L+VPLV+ G TG + R + ++DLES G HVALP N+W + + SE+ TA Q ++P+ +G +V+KKNGR+G R G P W +L+ DV RR+EAG+D NI
Sbjct: 11 KLREEVESPFRKVRFALYIAGAAGAAVSGLVALTQTIAALSGINV-ELLPEASRNLAIDVAAIAVIAFLWRRDLISQNSRYERISQGAKLAALGLQLQMADDSNVVSLADLRRRRGREKRVAIVLGGKEAVQRSLDSAVPVSSELLANDLLVVPLVI----GQTGDELNAERITDGPRIATLFNLQSDLESREGQPHVALPFGFNQWIDTLQSELVTAEKQKLNPIDDGLLIVIKKNGRVGTRKVGAPIWSSLIQDVERRREAGLDVVNI 275
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: A0A1Z5J7C3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7C3_FISSO) HSP 1 Score: 145 bits (367), Expect = 1.650e-37 Identity = 97/269 (36.06%), Postives = 142/269 (52.79%), Query Frame = 2 Query: 320 LRVEAESPFRKVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNVVVDVTAIVVSVGLVKRDLDAQEGRMARMEIGAKLAGLKVR--------LQTKD-DLSTVTLSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGAALETSDILIVPLVLESRPGMTGGGADMFRASGAENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
+R EAESPFRKVR L+ + A L+V+ R A GI+ + + E NVVVD I V V L KRDLDAQE R+ R GA+LA L VR + D + T +LS RR RG +KR+ + GG ++ ++ A +L SD++++P++ RA L S + A PV +W+ ++ E + A+ QG+D EGF ++LKKNGR+G R++G +VG+V +R+E G+D NI
Sbjct: 1 MREEAESPFRKVRFLLYLTLAGGAAASLVVSAARVAAALSGINP-ELLQESSINVVVDALGIAVLVFLFKRDLDAQESRLKRASRGAELAKLMVRGSKAILGDVDVNDGQIFTASLSDFRRGRGIEKRIVIAAGGRSIIEQVIQEATRLEKSLTLSDLIVIPVLFPDG-----------RAPDQNETLFSCL-----AFPVGEAKWRSFLTEEAKEAIKQGVDVENEGFCVILKKNGRVGQRTRGVF-LDQMVGEVTKRREMGLDVKNI 251
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: A0A7S2ED17_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ED17_9STRA) HSP 1 Score: 149 bits (375), Expect = 2.540e-37 Identity = 107/280 (38.21%), Postives = 144/280 (51.43%), Query Frame = 2 Query: 314 LRLRVEAESPFRKVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNVVVDVTAIVVSVGLVKRDLDAQEGRMARMEIGAKLAGLKVR-----------------LQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGA-ALETSDILIVPLVLESRPGMTGGGADMFRASGAENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
+RLR EAESPFRKVR F + ++ A L V+ R A G++ M E +TN V+D ++V L+KRD DAQE R+ R GA+ A L VR + ++V LSALRR RG DKRV + GG + + L+ A G AL +D++IVP+VL G D + + +V LP N W+ I E E A QG+D KEGF +VLKKNGR+G R++G + G+V R+EAGMD NI
Sbjct: 118 IRLREEAESPFRKVRFLGFGALLVGALTSLAVSTARIAAALAGVNT-DLMEESVTNAVIDTAGVIVLGFLLKRDGDAQESRLKRAAKGAEFAKLAVRGSSSLLEGAAAGTSSGSVSAGKSTTSVALSALRRGRGVDKRVVIAAGGKDKISDVLKEAKALGDDALSVNDLVIVPVVLPQCTAPLG------------LDDVTLIEQENVLLPAGGN-WRSIIADEAEDAKKQGVDVEKEGFCIVLKKNGRVGQRTRGIF-LDRMCGEVTERREAGMDVKNI 382
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: K8Z5D5_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z5D5_NANGC) HSP 1 Score: 147 bits (371), Expect = 1.160e-36 Identity = 96/270 (35.56%), Postives = 143/270 (52.96%), Query Frame = 2 Query: 317 RLRVEAESPFRKVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNVVVDVTAIVVSVGLVKRDLDAQEGRMARMEIGAKLAGLKVRLQT---KDDLSTVTLSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGAA--LETSDILIVPLVL----ESRPGMTGGGADMFRASGAENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
RLR EAESPFR +R ++ S +A G+ ++E ++ +D+ AI ++ L D + ++ R+ GAK+A LKV++Q + ++L+ RRDRG +RV + GG + V+++L +A G L + L+VPLVL E P + G A+ L+ A HV P+ L WQ+Y+ +E A QGIDPV++G S+VLK NGR+G R+ G P W LVGDV RR+ G+D TNI
Sbjct: 132 RLREEAESPFRSLRFLIYGGVGASXXXXXXXXXXXXLAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRRDRGMARRVVIFAGGEDVVQAALNTAGEAGMKERLIRNAFLVVPLVLPADGEDNPSVLGL---------AQERLQGAQDEPHVGWPLLLREWQDYLAAEAAAARKQGIDPVQQGISVVLKLNGRVGQRAFGKPAWERLVGDVERRRRRGLDVTNI 392
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: A0A7S2HAF0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HAF0_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.680e-36 Identity = 104/279 (37.28%), Postives = 148/279 (53.05%), Query Frame = 2 Query: 314 LRLRVEAESPFRKVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNVVVDVTAIVVSVGLVKRDLDAQEGRMARMEIGAKLAGLKVR--------------LQTKDDLSTVT--LSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGA-ALETSDILIVPLVLESRPGMTGGGADMFRASGAENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
+RLR EAESPFRKVR ++++ + A L V+ R A G++ M + LTN +VD++ IVV L KRD+DAQE R+ R GA A L +R L +K STV+ LS+LRR RG DKRV + GG + + L+ A G L +D++IVP+VL G ++ ++ LP N W+ + E E A++QG+D KEGF +VLKKNGR+G R++G + G+V R+E G+D NI
Sbjct: 132 IRLREEAESPFRKVRFLVYAALLGGALTSLAVSTARIAAALAGVNT-DLMDQSLTNAIVDLSGIVVIGYLFKRDVDAQESRLKRAAKGADFAKLAIRGSSSLLEGAAENASLTSKSGRSTVSVPLSSLRRGRGVDKRVVIAAGGRDKISEVLKEAQDLGDDILSLNDLVIVPVVLPQCTAPLGLDVELIE-------------QENILLPAGGN-WRSVLGDEAEDAVNQGVDVEKEGFCIVLKKNGRVGQRTRGIY-LSRMCGEVTERREMGLDVKNI 394
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: A0A7S2UT24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT24_9STRA) HSP 1 Score: 136 bits (342), Expect = 6.100e-35 Identity = 70/166 (42.17%), Postives = 92/166 (55.42%), Query Frame = 2 Query: 605 LQTKDDLSTVT-LSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGAALETSDILIVPLVLESRPGMTGGGADMFRASGAENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
L+ KD+ + LS RRDRG KRV + G E V +S+ + L +D+L VP+VLE P R E ++E G H+ LP L W E+I SE+E A QGID ++G V+KKNGR+G R+KGCPPW +GDV +R E GMD NI
Sbjct: 4 LRVKDEQEKIVQLSEYRRDRGNSKRVVIFAGNKEMVANSIVQSNSMSNRLVQTDLLAVPVVLEKTP------QGSIRCISTEQNIEEVAGQPHIGLPCTLGGWNEWISSELEVASGQGIDAYEDGIVFVIKKNGRVGQRAKGCPPWNIFIGDVEKRAELGMDVKNI 163
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Match: B7FR70_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FR70_PHATC) HSP 1 Score: 140 bits (353), Expect = 9.920e-35 Identity = 105/301 (34.88%), Postives = 155/301 (51.50%), Query Frame = 2 Query: 245 RSTRHAARGLTMQQTDEEARRTK----LRLRVEAESPFRKVRIFLFSSFVLSATVGLLVAGTRTIALTQGIDQGQSMTELLTNVVVDVTAIVVSVGLVKRDLDAQEGRMARMEIGAKLAGLKVR------------LQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAEAVKSSLESALPYGAALETSDILIVPLVLESRPGMTGGGADMFRASGAENDLESAVGSAHVALPVALNRWQEYIDSEVETALSQGIDPVKEGFSLVLKKNGRIGARSKGCPPWGTLVGDVVRRKEAGMDTTNI 1099
R T+H+A L M ++ +T+ L LR EAESPFRKVR F + S A L V+ +R A GI+ + E NV VDV +VV ++D +AQ+ R+ R GA+LA L VR + + T +L+++RR RG +KRV + G E + LE ++ +L SD+LIVP+ + G ++E VALPV N W+ ++ E E A+ QG++ KEG ++LKKNGR+G R+KG G +VG+V R++ G+D NI
Sbjct: 39 RLTQHSAIRLQMSDNNKSNGKTEYSRELYLREEAESPFRKVRFFFYYSLGAGALTSLAVSASRVAAALAGINT-DLLQESAINVGVDVAGLVVLGLAFQKDKEAQDSRLKRASKGAELARLTVRGSKSIITGDLPNVNEASETFTTSLASMRRGRGIEKRVVIAAAGKEKIAEILEDSIKLADSLVMSDLLIVPVEMPQ---------------GLSPNVEGKTVPDCVALPVG-NGWKAMVNDEAEEAIKQGVNIEKEGICIILKKNGRVGQRTKGIF-LGKMVGEVEERRDLGLDVKNI 321 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1024.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1024.214.1 >prot_E-siliculosus-1a_F_contig1024.214.1 ID=prot_E-siliculosus-1a_F_contig1024.214.1|Name=mRNA_E-siliculosus-1a_F_contig1024.214.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=347bp MVASRSLATLCLLACSCGGVLGFRPQAGTIGRSRWTGDHDVVCETSSAKTback to top mRNA from alignment at E-siliculosus-1a_F_contig1024:11601..18712- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1024.214.1 ID=mRNA_E-siliculosus-1a_F_contig1024.214.1|Name=mRNA_E-siliculosus-1a_F_contig1024.214.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7112bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1024:11601..18712- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1024:11601..18712- >mRNA_E-siliculosus-1a_F_contig1024.214.1 ID=mRNA_E-siliculosus-1a_F_contig1024.214.1|Name=mRNA_E-siliculosus-1a_F_contig1024.214.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2082bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1024:11601..18712- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |