mRNA_E-siliculosus-1a_F_contig1355.2115.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1355.2115.1
Unique NamemRNA_E-siliculosus-1a_F_contig1355.2115.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: D7G2J2_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J2_ECTSI)

HSP 1 Score: 479 bits (1233), Expect = 1.800e-164
Identity = 289/345 (83.77%), Postives = 298/345 (86.38%), Query Frame = 1 
Query:   70 MFRRKPNKPEAKKKRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNRDALAAETANSLRRKEEVRKANTKNPRVFLDIEIADATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFLGNIFHRIV--PKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQIPDEEKDKEXXXXXXXXXXXXXXXXXXXXKK--RPRVRFAKSNDAGGDGDGASKGGEEPKKSRRGDRDGDGKG 1092
            MFRRKPNKPEAKKKRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKN+DALAAE ANSLRRKEEVRKANTKNPRVFLDIEIAD TGAKSRLAKGKN GR+TLELFENAVPRTAENFRALCTGEK  G      ++ G      V  P               GGESIYGPTF DESF+LKHDQPGLLSMANS      GRDSNNSQFFITFGPLPWLD+KHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQIPDEEKDK XXXXXXXXXXXXXXXXXXXX    RPRVRFAKS+DAGGDG+GASKGGEEPKKSRRGDRDGDG+G
Sbjct:    1 MFRRKPNKPEAKKKRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNQDALAAEAANSLRRKEEVRKANTKNPRVFLDIEIADTTGAKSRLAKGKNAGRVTLELFENAVPRTAENFRALCTGEKV-GRERESDTWCGATSRTEVKPPDLNLTAYPPCPRCSCGGESIYGPTFVDESFQLKHDQPGLLSMANS------GRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQIPDEEKDKXXXXXXXXXXXXXXXXXXXXXXXXXRPRVRFAKSDDAGGDGNGASKGGEEPKKSRRGDRDGDGEG 338
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: A0A146LV45_LYGHE (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LV45_LYGHE)

HSP 1 Score: 221 bits (562), Expect = 7.130e-66
Identity = 107/191 (56.02%), Postives = 136/191 (71.20%), Query Frame = 1 
Query:  310 KANTKNPRVFLDIEIADATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFLGNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQI 882
            K   K  RVF DIEI             K VGR+T +LF++ VP+TAENFRALCTGEK +G+SG PL F  +IFHR++P FM QGGD TR +G+GGESIYG  FADE+F+L+HD+PGLLSMAN+G       ++N SQFFIT  P PWLD KHVVFG+V +G ++V+KIE  GT +G P  R+ I +CG++
Sbjct:    6 KKRKKMKRVFFDIEIGQ-----------KAVGRVTFKLFDDVVPKTAENFRALCTGEKGKGASGKPLHFKNSIFHRVIPDFMIQGGDFTRHNGTGGESIYGEKFADENFRLRHDKPGLLSMANAGP------NTNGSQFFITTVPCPWLDGKHVVFGQVEDGFDIVKKIEQQGTANGSPRTRIVITDCGEL 179
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: A0A8K0AHI2_ANDGO (Cyclophilin (Peptidylprolyl isomerase) n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0AHI2_ANDGO)

HSP 1 Score: 220 bits (560), Expect = 1.080e-65
Identity = 106/186 (56.99%), Postives = 134/186 (72.04%), Query Frame = 1 
Query:  325 NPRVFLDIEIADATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFLGNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQI 882
            NPRVF D+ I             +  GRI  ELF N VP+TAENFR+LCTGEK  G SG PL + G+IFHR++P+FMAQGGD TR +G+GGESIYG  FADE+FKLKHD+PGLLSMAN+G G      +N SQFF+TF   PWLD KHVVFG+VVEG E++ K+E  G+ SG+    +++++CGQ+
Sbjct:    3 NPRVFFDLSI-----------NNQPAGRIVFELFANIVPKTAENFRSLCTGEKGTGKSGKPLHYKGSIFHRVIPQFMAQGGDFTRGNGTGGESIYGEKFADENFKLKHDKPGLLSMANAGPG------TNGSQFFLTFVECPWLDGKHVVFGQVVEGKELLPKLESLGSQSGKTKVPIEVSDCGQL 171
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: A0A7S2SRD0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRD0_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.110e-65
Identity = 141/276 (51.09%), Postives = 173/276 (62.68%), Query Frame = 1 
Query:   73 FRRKPNKP-EA-KKKRAWEVDVEADDK--DEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNRDALAAE-TANSLRRKEEVRKANTKNPRVFLDIEIADATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFLGNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQIP 885
            FR+   KP EA ++KRAWE+D E D K  DEG +   S+AFL L+++LE +       A+R K+ +    E T    R              VFLDIE       K+R      VGR+ +ELF + VPRTAENFR+LC+G+  RG     L +  NIFHRI+P FMAQGGDITREDGSGG SIYG TF DES   KHD+PG+LSMANS      GR +NNSQFF+TF P PWLD KHVVFG+VV G  V++ IE  G+  GEP ++V IA CG IP
Sbjct:    4 FRKPKGKPGEAPRRKRAWELDQEEDVKAADEGSERQTSKAFLQLRQDLEAR-------AQRVKDAEKRQQEGTKTPARAAPXXXXXXXDRICVFLDIET------KARGKHAVPVGRLKIELFNDLVPRTAENFRSLCSGDH-RG-----LWYRDNIFHRIIPGFMAQGGDITREDGSGGRSIYGETFEDESLLGKHDKPGILSMANS------GRHTNNSQFFLTFKPTPWLDGKHVVFGEVVAGFSVLKSIERAGSKEGEPKEQVIIASCGAIP 254
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: A0A388MFL0_CHABU (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MFL0_CHABU)

HSP 1 Score: 219 bits (558), Expect = 2.220e-65
Identity = 107/186 (57.53%), Postives = 133/186 (71.51%), Query Frame = 1 
Query:  325 NPRVFLDIEIADATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFLGNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQI 882
            NP VF DI I            G+ VGRI +EL++N VPRTAENFRALCTGEK  G SG PL + G  FHR++PKFM QGGD TR DG+GGESIYG  FADE+F+ KH +PG+LSMAN+G       ++N SQFF+   P PWLD KHVVFGKV++GM+VV K+E  G++SG  ++ V IA+CGQ+
Sbjct:    3 NPTVFFDITIG-----------GRKVGRIVMELYKNVVPRTAENFRALCTGEKGTGRSGRPLHYKGCTFHRVIPKFMCQGGDFTRGDGTGGESIYGAKFADENFQHKHTEPGVLSMANAGP------NTNGSQFFLCTVPTPWLDGKHVVFGKVIQGMDVVAKVESVGSSSGRTSQPVVIADCGQL 171
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: A0A455B6L4_PHYMC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Physeter macrocephalus TaxID=9755 RepID=A0A455B6L4_PHYMC)

HSP 1 Score: 219 bits (558), Expect = 2.290e-65
Identity = 114/187 (60.96%), Postives = 133/187 (71.12%), Query Frame = 1 
Query:  322 KNPRVFLDIEIADATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFLGNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQI 882
            KNP+VF DI I            GK  GRI  ELF+N VPRTAENFRALCTGEK RG SG PLS+ G  FHRI+P+FM QGGD T  +G+GGESIYG  FADE+F+LKH +P LLSMANSG       ++N SQFFIT  P PWLD KHVVFGKVVEG +VV+++E  GT SG   + V IA+CGQ+
Sbjct:    3 KNPQVFFDITIG-----------GKPAGRIVFELFKNIVPRTAENFRALCTGEKGRGVSGKPLSYKGCSFHRIIPEFMCQGGDFTNFNGTGGESIYGMKFADENFELKHTEPFLLSMANSGP------NTNGSQFFITTVPCPWLDGKHVVFGKVVEGTDVVKQMEQQGTRSGTVKQPVVIADCGQL 172
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: A0A7S2V5N2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5N2_9STRA)

HSP 1 Score: 223 bits (568), Expect = 5.190e-65
Identity = 134/282 (47.52%), Postives = 172/282 (60.99%), Query Frame = 1 
Query:   79 RKPNKPEAKKKRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNRDALAAETANSLRRKEEVRKANTKNPRVFLDIEIA------DATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPR-GSSGFPLSFLGNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQIPDEEKDK 903
            +K  K + K+K  W+ + E +  +E  +  PSEAF+ LQ++LEEKE+I++EN  R   R  +  E+ N L   E  +  +  NP VF+D+ +       D  G   R  + +  GR+  EL     PRTAENFR LCTGEK R      PL +LGNIFHRI+P FMAQGGDIT EDG+GGESIYG  F DE+F LKH   G LSMANSG        SN+SQFF+T GP   LD KHVVFG+++EG + +R IE  GT SGE  K+V I  CG++     DK
Sbjct:   12 KKDQKQKLKRKPKWQQEQEDNSSEE--EAVPSEAFMKLQKDLEEKERIKKEN--RVSKRGDIKKESHNEL---EPAQHESGPNPVVFMDVSVREKGVSYDQNGIP-RKQQEQQRGRLVFELLSAVAPRTAENFRCLCTGEKGRIPGKSLPLHYLGNIFHRIIPGFMAQGGDITHEDGTGGESIYGGKFRDENFLLKHHSAGQLSMANSGP------HSNSSQFFLTLGPARHLDGKHVVFGQMLEGEDFLRIIESAGTKSGETIKQVTIDGCGELTSSYYDK 279
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: UPI0018FE4581 (peptidylprolyl isomerase n=1 Tax=Streptomyces sp. NRRL F-5126 TaxID=1463857 RepID=UPI0018FE4581)

HSP 1 Score: 216 bits (550), Expect = 3.180e-64
Identity = 106/186 (56.99%), Postives = 131/186 (70.43%), Query Frame = 1 
Query:  325 NPRVFLDIEIADATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFLGNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQI 882
            NPRV+ D+ + D              GRIT ELF + VP+TAENFRALCTGE+  G SG PL F G+ FHR++P+FM QGGD TR DG+GGESIYG  FADE+F LKHD PG+LSMAN+      GR++N SQFFI   P PWLD KHVVFGKV++ ME+V+ IE  G+ +G+ TK V I+ CGQ+
Sbjct:    2 NPRVYFDMTVGDVAA-----------GRITFELFADVVPKTAENFRALCTGERGVGKSGKPLHFEGSKFHRVIPQFMCQGGDFTRGDGTGGESIYGGKFADENFDLKHDVPGILSMANA------GRNTNGSQFFICTVPTPWLDGKHVVFGKVIDNMELVKTIESVGSQNGKTTKDVVISACGQL 170
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: A2DT06_TRIVA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2DT06_TRIVA)

HSP 1 Score: 215 bits (547), Expect = 9.760e-64
Identity = 103/187 (55.08%), Postives = 130/187 (69.52%), Query Frame = 1 
Query:  322 KNPRVFLDIEIADATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFLGNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQI 882
            K P+ F DI I           +G  VG+I  ELF + VP+TAENFRALCTGEK  G SG PLS+ G +FHRI+P+FM QGGD TR +G+GGESIYG  F DE+FK+KHD+PGLLSMAN+G       ++N SQFFIT    PWLD  H VFG+V+EGM++V++IE CGT SG P     + +CG++
Sbjct:    3 KRPKTFFDISI-----------RGDKVGKIVFELFNDIVPKTAENFRALCTGEKGIGKSGMPLSYKGTMFHRIIPQFMIQGGDFTRFNGTGGESIYGMKFDDENFKVKHDKPGLLSMANAGP------NTNGSQFFITTVETPWLDGHHCVFGQVIEGMDIVKQIESCGTESGRPRAMCMVTDCGEM 172
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Match: E1ZIT6_CHLVA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIT6_CHLVA)

HSP 1 Score: 214 bits (546), Expect = 1.420e-63
Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 1 
Query:  325 NPRVFLDIEIADATGAKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFLGNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLSMANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIEDCGTTSGEPTKRVQIAECGQI 882
            NPRVF DI IA           G+  GRI + LF++ VP+TAENFR LCTGE  +G  G PL + G++FHR++P FM QGGD    DG+GGESIYG TFADESF+LKH +PG+LSMAN+G G      +N SQFF+T  P  WLD KHVVFG+V EGM VV+++E  G+ SG  ++++ IA+CG++
Sbjct:    3 NPRVFFDISIA-----------GEEAGRIVMTLFDDVVPKTAENFRQLCTGEAGQGRCGKPLHYKGSLFHRVIPDFMCQGGDFENADGTGGESIYGSTFADESFQLKHTEPGMLSMANAGPG------TNGSQFFLTTAPCQWLDGKHVVFGRVTEGMAVVKRMESLGSRSGRTSQKIYIADCGEV 171
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1355.2115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J2_ECTSI1.800e-16483.77PPIase cyclophilin-type domain-containing protein ... [more]
A0A146LV45_LYGHE7.130e-6656.02Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A8K0AHI2_ANDGO1.080e-6556.99Cyclophilin (Peptidylprolyl isomerase) n=1 Tax=And... [more]
A0A7S2SRD0_9STRA1.110e-6551.09Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizoc... [more]
A0A388MFL0_CHABU2.220e-6557.53Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chara ... [more]
A0A455B6L4_PHYMC2.290e-6560.96Peptidyl-prolyl cis-trans isomerase n=1 Tax=Physet... [more]
A0A7S2V5N2_9STRA5.190e-6547.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0018FE45813.180e-6456.99peptidylprolyl isomerase n=1 Tax=Streptomyces sp. ... [more]
A2DT06_TRIVA9.760e-6455.08Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tricho... [more]
E1ZIT6_CHLVA1.420e-6354.30Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chlore... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1355contigE-siliculosus-1a_F_contig1355:1799..7592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1026
Model size1635
Exons7
Ec32 orthologEc-12_001720.1
Ec32 ortholog descriptionCyclophilin-like domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC5.2.1.8
EggNOG OGsCOG0652@1,KOG0865@2759
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
KEGG koko:K01802
Seed eggNOG ortholog2880.D7G2J2
Seed ortholog evalue1.5e-133
Seed ortholog score482.6
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.397937-UTR-E-siliculosus-1a_F_contig1355:1798..18671622927869.397937-UTR-E-siliculosus-1a_F_contig1355:1798..1867Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 1799..1867 +
1696318716.4293635-UTR-E-siliculosus-1a_F_contig1355:1798..18671696318716.4293635-UTR-E-siliculosus-1a_F_contig1355:1798..1867Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 1799..1867 +
1622927869.520441-UTR-E-siliculosus-1a_F_contig1355:7052..75921622927869.520441-UTR-E-siliculosus-1a_F_contig1355:7052..7592Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 7053..7592 +
1696318716.5088806-UTR-E-siliculosus-1a_F_contig1355:7052..75921696318716.5088806-UTR-E-siliculosus-1a_F_contig1355:7052..7592Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1355 7053..7592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.411233-CDS-E-siliculosus-1a_F_contig1355:1867..19091622927869.411233-CDS-E-siliculosus-1a_F_contig1355:1867..1909Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 1868..1909 +
1696318716.4437613-CDS-E-siliculosus-1a_F_contig1355:1867..19091696318716.4437613-CDS-E-siliculosus-1a_F_contig1355:1867..1909Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 1868..1909 +
1622927869.423195-CDS-E-siliculosus-1a_F_contig1355:3121..33071622927869.423195-CDS-E-siliculosus-1a_F_contig1355:3121..3307Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 3122..3307 +
1696318716.452037-CDS-E-siliculosus-1a_F_contig1355:3121..33071696318716.452037-CDS-E-siliculosus-1a_F_contig1355:3121..3307Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 3122..3307 +
1622927869.43392-CDS-E-siliculosus-1a_F_contig1355:4199..43851622927869.43392-CDS-E-siliculosus-1a_F_contig1355:4199..4385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 4200..4385 +
1696318716.4596603-CDS-E-siliculosus-1a_F_contig1355:4199..43851696318716.4596603-CDS-E-siliculosus-1a_F_contig1355:4199..4385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 4200..4385 +
1622927869.450165-CDS-E-siliculosus-1a_F_contig1355:4987..50941622927869.450165-CDS-E-siliculosus-1a_F_contig1355:4987..5094Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 4988..5094 +
1696318716.467793-CDS-E-siliculosus-1a_F_contig1355:4987..50941696318716.467793-CDS-E-siliculosus-1a_F_contig1355:4987..5094Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 4988..5094 +
1622927869.4676824-CDS-E-siliculosus-1a_F_contig1355:5775..58851622927869.4676824-CDS-E-siliculosus-1a_F_contig1355:5775..5885Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 5776..5885 +
1696318716.4782944-CDS-E-siliculosus-1a_F_contig1355:5775..58851696318716.4782944-CDS-E-siliculosus-1a_F_contig1355:5775..5885Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 5776..5885 +
1622927869.4809237-CDS-E-siliculosus-1a_F_contig1355:6238..63211622927869.4809237-CDS-E-siliculosus-1a_F_contig1355:6238..6321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 6239..6321 +
1696318716.4899743-CDS-E-siliculosus-1a_F_contig1355:6238..63211696318716.4899743-CDS-E-siliculosus-1a_F_contig1355:6238..6321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 6239..6321 +
1622927869.4968684-CDS-E-siliculosus-1a_F_contig1355:6740..70521622927869.4968684-CDS-E-siliculosus-1a_F_contig1355:6740..7052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 6741..7052 +
1696318716.4994962-CDS-E-siliculosus-1a_F_contig1355:6740..70521696318716.4994962-CDS-E-siliculosus-1a_F_contig1355:6740..7052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1355 6741..7052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1355.2115.1prot_E-siliculosus-1a_F_contig1355.2115.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1355 1868..7052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1355.2115.1

>prot_E-siliculosus-1a_F_contig1355.2115.1 ID=prot_E-siliculosus-1a_F_contig1355.2115.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2115.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=342bp
MFRRKPNKPEAKKKRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEK
IQQENAERAKNRDALAAETANSLRRKEEVRKANTKNPRVFLDIEIADATG
AKSRLAKGKNVGRITLELFENAVPRTAENFRALCTGEKPRGSSGFPLSFL
GNIFHRIVPKFMAQGGDITREDGSGGESIYGPTFADESFKLKHDQPGLLS
MANSGKGISVGRDSNNSQFFITFGPLPWLDAKHVVFGKVVEGMEVVRKIE
DCGTTSGEPTKRVQIAECGQIPDEEKDKEERNASDEEEEEEEEEEASGGK
KRPRVRFAKSNDAGGDGDGASKGGEEPKKSRRGDRDGDGKG*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1355:1799..7592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1355.2115.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2115.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2115.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5794bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:1799..7592+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCCAACGCAAACGAGGGCAACCCCTGGTGCTGGCTCGTCGTGTGCGTTT
TCTGTTTGCTGGATTGGTCATGTTTCGTCGGAAGCCAAACAAGCCGGAGG
CGAAGAAGAAGGTGAAGATTTGCGTAAATTAAGCGGACGAAAGCGTGAAT
GTGCACACTCAAGCAGCAGGATTTCAAACTGTTGGATTTGACGAATGATA
CCACTCTCCAACCCATCGCAGCGTACATCCCATGCGTGCTTCGAAATTGT
AGTGTGATATATCAGTACAGTATCCGGGCTCCTTGCTCTTCCAGTTCCTT
TTTTCACGATGATGTAATACCAGCTTTTAGAAGGGTACGCCGCAGGTACC
CGTTGGTCTGTAAGGTAAATGGATTTCTCCCTATTTCGCCGCACACACAT
GCGCGTGCGAATACTTGCTGGTGTCATGTGTCATGGTTGCAACGTTCGAA
TCTTAAATCTTTCCTCCCCCGACTATCGCAGGGCCTTAGTCTAGTTTGCG
GCTGCTTCAATGTCAAGCTGGACAGAAGTGATAATCTTGATGGCGTGGAG
TATCTGTACTGCCACCCTGACCCACAAGGTCTCAATTGTAATCTTCACAT
TGGCCCATGGTTGTATGTAGACGTGTGAAGTCGGCTTACTGCTGTAGTTC
CTCTCCAACAGGGTGCCGTGTTGCTTTCAACTGCACCGTGAAGCGGCGTT
TATCCTGCTTCCAGGAGAACGATGCAATGCGTACCCCGTTCTTGGACGTG
GAGTGAAATACCATGTTGGAGGCTAGCCGTGTCCCCGTAGTCGCCCGCGA
TGTCTGTGAGGAGCACGGCGTAGATGAAGTCGTTGCCCCACCAGCGCAGC
GAGATGAACAGTAACAAATGATAAGGGTCTTTGGGAACACGCTCGTTCTC
GTTCCCAAAAAACCCTTTGATTTTCGAGGATATTGGCAGCGCTTCTATTT
AGTCTATAGTTTTTCGTTTTCGTTCATTGGCTTCGTCATCTTTGTGCACA
AGAAGTCTAATTGCCCACCCCCCTACCCCCGCGGTGAATACCTCACGGCG
CTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCT
CCGTCCCGGCTTTGTAGGGATACGAGGTCAATGGTCTAACGACTACGGCA
CGCACGACTATGAGTACGCCCCCCCCCCCCCCCCCCCCCCGGNNNNNNNN
CTCCTATTTATTCTATAGTTGTGCGTTTTGGTTCCTTGGCTTCGTCACCT
TGGTGCCCAAGAAGCCTAACCCCCCCCCCCCCTCCCCCCCCCGTTGCCCG
GTGCGTGGACACTCGCCTTCCAGAGGGCCTGGGAGGTGGATGTGGAGGCC
GACGACAAAGATGAGGGGGATGACACTACCCCAAGCGAGGCGTTTTTGTC
GTTACAGAGGGAACTAGAGGAGAAGGAGAAGATCCAGCAGGAGAACGCAG
AGAGGGCGAAGAACCGGGACGCTCTTGCTGCAGAGACGGCGAACAGCCTG
CGGAGAAAGGTCGTTTTTTTTTGCGCGAAAAACCTCACGAACATACACGC
GGGCTTGGTGATGATGACTCGTGCGTAGCTCTCGTGTGCGGTATTTGTAG
AAAGAGCAGGGTAGATAGATCCTCCAAGATTTTTTTACTGTCGGGTCGTG
GCGTGCCCAGTCACGACATACGAACAATATGAGGCACCTTCTGCGTCTTG
TATGGTGTTTTGGTTGAAGACGCTCTTGCACTGGGGCTGCACTTGCTGGT
GAGGTACCTCCGCTGAGCAATGGGCGCGTCGCTGGAAACTTGTTCCAGTT
TTGACTCATATCAACTTGAAAATAGTATGGATTCTTCACGTCCTTTGCGG
GATCCCACGTCCTGCGCTTGCGGGACCGGGGTACGAACTGTTTTACCGTC
GGTTGTGTGTGTTTTCCTTGGAAACTTGGTCCAATGTTGACACATATCAA
CGTGAAAATAGTATGGATTCTTCACGTCCTTTGCGGGATCCCACGTCTTG
CGCTTGCGGGACCGGGGTACGAACTGTCTTACCGTCGGTTGTGTGTGTTT
TCCTTGGCAGAAGCTTCTCCCCTGACACACTTTCGGCAAGCGCTTGCGCA
CCTGCGGCGCATAGTATCGAGGCAGACTTCCCCGCCTTTCTTTGCCGGTT
TTCTTTGCCAACCGCAGCGTCTCACCAGTGTCACGTGCGCACCAGTCAGC
ACCGAAAGTCGAAAACTTACGACATCCATGAAAAATCCACCCGTTACGAC
CGCCGTGCCTTGAAGGCGTGGTAACAGTAGTCTTGGTTAACCCGGTGAAC
CGCTCTGGGCACCCCACCCACCCAACCACCCACCCAATCGCGCTCATATA
TGGACGGATGGAATTCCCGATTATTCTCCAAAAAAAAATAACAACCGGCA
GGAAGAAGTGCGGAAGGCGAACACCAAGAACCCGAGAGTGTTCCTCGACA
TCGAGATAGCAGATGCCACGGGCGCGAAGAGCCGGTTGGCCAAGGGGAAG
AACGTCGGGCGCATAACCCTGGAGCTCTTCGAGAACGCCGTGCCGCGGAC
GGCCGAGAACTTCCGTGCCCTGTGCACCGGAGAGAAGGTAAGTGCGTGGG
GCCATGGCAGTAGTCTACGCAGGCTTTCTCTAAGCAAGCAAACATGCTGG
ATAAAGCGTGGAATCGACTGAGTTGGGGTTAGGGCTAGGGTTCGGGTCTG
CGTGCCCCCTCCCTGGTCGTTTTTCGCAATTACCTTACTTTCTTTGCGTG
GGCAGTCCGGCCGTGGAGCTGTGGCTGTCGGTATTGGGGTAGAGGAGCTC
GGAGTAGGCGACCGGAAGAGGTCCCGGCGACCTGACGATGCCACCCTTTT
TTTTGTTGCGGCGAGATGACTTGACGCGCTGGGACTGTTATGGCGTGCAG
GCACGCGAGGCAGTTCATTCGCGAGGTGTGGCATGTGTTCCGAGTTTTGA
ATGCCACTGGTGCTGCTGCGTGGCATGTGTGTTGTTTACGGTTTCACTTC
TTGCCTGCACCGTGCGCTCAGCCTGGGAACGCCGCCGCGCGTGGTTGCCG
CGCTGCCATACTACAGCAGGAGCGTGCTCTATTTTTCCCATTATGGTTTT
TTCGTTTGGGGTCGTCCCACACTCTGACATGCTTTTGTCGTCCCGTGCCG
TGTTTTTTCTACCGAACCTAAATGCACGTCATGGCACAGCCACGGGGGTC
GAGTGGATTCCCGCTAAGCTTCCTGGGCAACATTTTCCACAGAATCGTCC
CTAAATTTATGGCTCAAGGGGGAGACATTACTAGGGAAGACGGAAGGTGG
GAGTGGGAGGGAGGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATG
GACTGAGAGATCAAACATAAGGAGGTACAAGGAGTGAGAGAAGGATGGGC
AGGGAGAGAAAACGTGAGGCACAGGGGGAGAGAAAGTGGAGAGATAGAGA
GGATGGGGGGGGGGGCAAGTGAGAGGTCTCTCGTCTGTCATTGTCCACCG
TTTTCTCACCCTGGCCACTACTGCAGTTCATGTGACTATATCCGTGTCGC
CTGCGGCTTTCGTTAGTTTCACCCAGCTTTGAGAGCGTTTCTCCGTACAC
GATTATTTTTTTCTCGAATGCTTGCCAAGAGCCCGACTCTACTTATTACC
GTTGTCATTGTCTAGGAAGCCGAGATGCGGAGACGCGCCCGCGGTTACCC
TGCACAAGGCAGATCACGTCACGGACCCACTTCGGTATTTACTGATCCTC
GTTTTTTTCGTACAGGTGGGCCGAGAGCGAGAGAACGACACATGGTGCGG
TGCAACATCGAGAACCGAAGTAAATCCCCCTGAATCAAGCTTGACGCCTT
ACCCCCCTTGCTCTCGTTGTTCGTGGCGTGTCGTGTCTCCATTGTGTGTG
TCTGTGGTCGTTTTACCCGCACGGCAGCGGTGGAGAGTCCATCTACGGGC
CAACGTTTGCGGACGAAAGCTTTAAACTTAAGCACGACCAACCTGGTCTG
CTCTCCATGGCTAATTCAGGCAAGGGAATCTCGGTCGGTGTTATCGAGGG
GGGGAGAGAGGTGTGCTCGGTAAATTCTGTGCGTCAAGGATGTTTTTTCT
TGTTGTTCGACATTCCGCTGCTCGACCTCGAAGTTCCAACTCTTGGTGAA
ACTGCCGATTTGCGCCGTCTTTAGACCCGTTTCGTTCAAGATACCGTGAT
CTGTGGTTCTCGGTCTGCCTCTGTCTGCCTGTCTGATCTGTCTGTCTGTC
TATCTGTCTGTCTGTCTCTTTTCACATTACTCCGTGCCGCCGTCTCCTCC
CCGTTTCTCCGTGCATGTTTCTCTCGCTCTCTCTCTCTTTCTCTGCCTTT
GTGTGTGGGTCTCTCTCTCTGCCCACTTTTTTCTCATCAGGTCGAGACAG
CAACAACTCTCAATTTTTCATCACGTTCGGCCCCCTTCCTTGGCTGGACG
CAAAGCACGTCGTGTTTGGCAAGGTACTTAATTGCTGTCTCGTACGTACC
ACCGTGCCGGGAAACCGGAGGTTGTACCTGCGAATATTTTCACCGACTTG
TAGCCCTTGCCTGTCTGCCCAATTCGGTGCCTGAGGATGTGTCAACTCCG
AATTTGCTATGACGTCACGGGCGCGTCAGACATCAGCACGTTTGAGAAGA
ATCCCTCGAGTTGCCGAGTCGCTTATCTGAATAATAAACGCGGTGAAGCC
CTTTTTTTCTTCTTTTTTTCTCACGTCATTTGCAACCACGGGTCCGCGCG
ACTATTTAGACTCTGCGAAGCACCCGCAATAAGAATGCGCGATTCCCGGC
AGAAAAACAATCGCCATTCAAATAGCTTTGTCCCCGGCCGCCCTCCACGC
CGTCGACCGAACCCCACCCCGTGCTCTATTCTCCCGCGTAAGGTTGTGGA
GGGCATGGAAGTGGTGCGAAAGATCGAAGACTGCGGCACAACTTCAGGAG
AGCCGACCAAGAGGGTTCAGATAGCCGAGTGCGGGCAGATTCCGGACGAG
GAAAAGGACAAGGAGGAGAGAAATGCTAGCGACGAAGAGGAGGAAGAGGA
GGAGGAGGAGGAGGCTTCAGGTGGGAAGAAGAGGCCTAGGGTAAGGTTTG
CCAAGAGCAATGACGCAGGCGGCGATGGCGATGGCGCTTCGAAGGGGGGC
GAGGAACCGAAAAAGAGCAGGCGCGGGGATCGGGACGGGGATGGGAAGGG
CTAGCGACGGGCTTTACGACAATGGGAGAAACTGAGTGGCTTTGAAGTTA
GCGTGCCAACCGTGGTATAATCGCTGACGTTTTTCGAGCGTCTTGTAAGG
CCCCGGACTTTTGCCGTGAGTTGGGGATCGTACGTCGTGCCAGGAGATTT
GTTGGCCGGAAAAGGTTGCAAGTGTTTTAGGAATGTTTAGACGTGTGCAG
CGAGTCAAGCGCTGCTCCACACAAGTTGGCGAAGTTTGTGCGTGCGTGAT
GTTGGTTGCCGCTCCTGGGAGAACGTCCAGCTGCGCAACACAGAGGTCGA
CCCCTGATTTGCCGGTGTGTTGCCGCACCCTGTTTTGCGGTGCGCGTGCT
CCATGCAGAATTATTTTAGCACAATCGGGGTACTACTGTATGCGGGCCCG
TCTGCAAAGGGCCCGTTTTTTGTGGTCAACGCACGGCGTGTTTTTTCAAC
GTGCGCGTTTCACAACCTGGTGAGTTTCTGCTGCAGACCGAATCAACACC
ATGAAGCTCAAACTGATTACCCGAATGCTCCGCCCACAGGAGGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1355:1799..7592+

>mRNA_E-siliculosus-1a_F_contig1355.2115.1 ID=mRNA_E-siliculosus-1a_F_contig1355.2115.1|Name=mRNA_E-siliculosus-1a_F_contig1355.2115.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1355:1799..7592+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTCGTCGGAAGCCAAACAAGCCGGAGGCGAAGAAGAAGATGTTTCG
TCGGAAGCCAAACAAGCCGGAGGCGAAGAAGAAGAGGGCCTGGGAGGTGG
ATGTGGAGGCCGACGACAAAGATGAGGGGGATGACACTACCCCAAGCGAG
GCGTTTTTGTCGTTACAGAGGGAACTAGAGGAGAAGGAGAAGATCCAGCA
GGAGAACGCAGAGAGGGCGAAGAACCGGGACGCTCTTGCTGCAGAGACGG
CGAACAGCCTGCGGAGAAAGAGGGCCTGGGAGGTGGATGTGGAGGCCGAC
GACAAAGATGAGGGGGATGACACTACCCCAAGCGAGGCGTTTTTGTCGTT
ACAGAGGGAACTAGAGGAGAAGGAGAAGATCCAGCAGGAGAACGCAGAGA
GGGCGAAGAACCGGGACGCTCTTGCTGCAGAGACGGCGAACAGCCTGCGG
AGAAAGGAAGAAGTGCGGAAGGCGAACACCAAGAACCCGAGAGTGTTCCT
CGACATCGAGATAGCAGATGCCACGGGCGCGAAGAGCCGGTTGGCCAAGG
GGAAGAACGTCGGGCGCATAACCCTGGAGCTCTTCGAGAACGCCGTGCCG
CGGACGGCCGAGAACTTCCGTGCCCTGTGCACCGGAGAGAAGGAAGAAGT
GCGGAAGGCGAACACCAAGAACCCGAGAGTGTTCCTCGACATCGAGATAG
CAGATGCCACGGGCGCGAAGAGCCGGTTGGCCAAGGGGAAGAACGTCGGG
CGCATAACCCTGGAGCTCTTCGAGAACGCCGTGCCGCGGACGGCCGAGAA
CTTCCGTGCCCTGTGCACCGGAGAGAAGCCACGGGGGTCGAGTGGATTCC
CGCTAAGCTTCCTGGGCAACATTTTCCACAGAATCGTCCCTAAATTTATG
GCTCAAGGGGGAGACATTACTAGGGAAGACGGAAGCCACGGGGGTCGAGT
GGATTCCCGCTAAGCTTCCTGGGCAACATTTTCCACAGAATCGTCCCTAA
ATTTATGGCTCAAGGGGGAGACATTACTAGGGAAGACGGAAGCGGTGGAG
AGTCCATCTACGGGCCAACGTTTGCGGACGAAAGCTTTAAACTTAAGCAC
GACCAACCTGGTCTGCTCTCCATGGCTAATTCAGGCAAGGGAATCTCGGT
CGCGGTGGAGAGTCCATCTACGGGCCAACGTTTGCGGACGAAAGCTTTAA
ACTTAAGCACGACCAACCTGGTCTGCTCTCCATGGCTAATTCAGGCAAGG
GAATCTCGGTCGGTCGAGACAGCAACAACTCTCAATTTTTCATCACGTTC
GGCCCCCTTCCTTGGCTGGACGCAAAGCACGTCGTGTTTGGCAAGGTCGA
GACAGCAACAACTCTCAATTTTTCATCACGTTCGGCCCCCTTCCTTGGCT
GGACGCAAAGCACGTCGTGTTTGGCAAGGTTGTGGAGGGCATGGAAGTGG
TGCGAAAGATCGAAGACTGCGGCACAACTTCAGGAGAGCCGACCAAGAGG
GTTCAGATAGCCGAGTGCGGGCAGATTCCGGACGAGGAAAAGGACAAGGA
GGAGAGAAATGCTAGCGACGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGG
CTTCAGGTGGGAAGAAGAGGCCTAGGGTAAGGTTTGCCAAGAGCAATGAC
GCAGGCGGCGATGGCGATGGCGCTTCGAAGGGGGGCGAGGAACCGAAAAA
GAGCAGGCGCGGGGATCGGGACGGGGATGGGAAGGGCTAGGTTGTGGAGG
GCATGGAAGTGGTGCGAAAGATCGAAGACTGCGGCACAACTTCAGGAGAG
CCGACCAAGAGGGTTCAGATAGCCGAGTGCGGGCAGATTCCGGACGAGGA
AAAGGACAAGGAGGAGAGAAATGCTAGCGACGAAGAGGAGGAAGAGGAGG
AGGAGGAGGAGGCTTCAGGTGGGAAGAAGAGGCCTAGGGTAAGGTTTGCC
AAGAGCAATGACGCAGGCGGCGATGGCGATGGCGCTTCGAAGGGGGGCGA
GGAACCGAAAAAGAGCAGGCGCGGGGATCGGGACGGGGATGGGAAGGGCT
AG
back to top