mRNA_E-siliculosus-1a_F_contig13505.2098.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE) HSP 1 Score: 264 bits (674), Expect = 3.930e-79 Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
+VFFMTAGGVSKAS+GINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV
Sbjct: 1577 KVFFMTAGGVSKASRGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 1715
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA) HSP 1 Score: 224 bits (572), Expect = 2.100e-65 Identity = 112/139 (80.58%), Postives = 127/139 (91.37%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
+VFFMT GG+SKASKGINLSEDIFAGYN TIRGGQ+ F EY QVGKGRDVGMQQIYKFEAKL+QGAAEQ+LSRDVNRLG RLDFFRL+SFYFGGLGYY+GNFIT++T+ FVVYF+LAL+VF E IG+RK+ PEG LQ+
Sbjct: 1287 KVFFMTRGGMSKASKGINLSEDIFAGYNNTIRGGQVVFCEYAQVGKGRDVGMQQIYKFEAKLAQGAAEQSLSRDVNRLGARLDFFRLVSFYFGGLGYYIGNFITIVTIVFVVYFMLALSVFQAEKIGERKITPEGTLQM 1425
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: A0A7S3LH45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LH45_9STRA) HSP 1 Score: 191 bits (485), Expect = 5.080e-57 Identity = 97/139 (69.78%), Postives = 116/139 (83.45%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
++FF+T GG+SKASKGINLSEDIFAGYN RGG + FKEYVQ+GKGRDVGM QIYKFEAKLSQGAAEQ+LSRDV R+ +RLDFFRLLSFY+GG+G+Y N +T+LTV VVY + LAVF+ E IGDR + P G +Q+
Sbjct: 60 KLFFITRGGISKASKGINLSEDIFAGYNNVNRGGTVGFKEYVQIGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDVYRMCNRLDFFRLLSFYYGGIGHYFSNVLTILTVYVVVYLMTVLAVFNLEKIGDRMITPMGTIQM 198
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA) HSP 1 Score: 191 bits (486), Expect = 1.650e-56 Identity = 99/139 (71.22%), Postives = 115/139 (82.73%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
++FFMT GGVSKASKGINLSEDIFAGY+ IRGGQ+ FKEY+QVGKGRDVGM QIYKFEAKLSQGAAEQ+LSRDV R+ RLDF RL +FYFGG+G+Y N +TVLTV V Y V LA++D E IGD+K+ P G LQ+
Sbjct: 79 KLFFMTRGGVSKASKGINLSEDIFAGYSNVIRGGQVGFKEYLQVGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDVYRMSHRLDFCRLFTFYFGGIGHYFSNVLTVLTVYVVTYLVALLAIYDIEVIGDQKVTPVGTLQM 217
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA) HSP 1 Score: 196 bits (497), Expect = 2.610e-55 Identity = 100/139 (71.94%), Postives = 120/139 (86.33%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
++FFMT GG+SKASKGINLSEDIFAG+N +RGG + FKEYVQVGKGRDVGMQQIYKFEAKL+QG AEQ+LSRDV+RL R+DF RLLS YFGGLG+Y+ +F+TV TV FVVY + LA+F E+IGDRK+IPEG +Q+
Sbjct: 1064 KLFFMTRGGISKASKGINLSEDIFAGFNNQLRGGNVEFKEYVQVGKGRDVGMQQIYKFEAKLAQGNAEQSLSRDVHRLAARVDFGRLLSLYFGGLGFYINSFLTVFTVFFVVYLMTYLALFGLEAIGDRKVIPEGVVQM 1202
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA) HSP 1 Score: 191 bits (486), Expect = 7.980e-54 Identity = 99/139 (71.22%), Postives = 114/139 (82.01%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
++FFMT GGVSKASKGINLSEDIFAGYN +RGG + FKEYVQ GKGRDVG QQIYKFEAKLSQG AEQ+LSRDV R+ R+DFFRLLS YFGG+G+Y GN +TV TV V Y +L LA++D E IGDRK+ P G LQ+
Sbjct: 1510 KLFFMTRGGVSKASKGINLSEDIFAGYNNLVRGGGVDFKEYVQCGKGRDVGGQQIYKFEAKLSQGNAEQSLSRDVYRVAQRVDFFRLLSTYFGGIGHYCGNVLTVFTVYLVCYLMLGLALYDCEKIGDRKITPSGTLQM 1648
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: A0A7S1FM30_9STRA (1,3-beta-glucan synthase n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FM30_9STRA) HSP 1 Score: 191 bits (485), Expect = 1.090e-53 Identity = 93/139 (66.91%), Postives = 115/139 (82.73%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
++FFMT GG+SK+SKGINLSEDIFAGYN +RGG + F+EY+QVGKGRDVGM QIYKFEAKLSQGAAEQ+LSRD+ R+G RLDF RL S YFGG+G+Y N +TVLT+ V Y ++ LA+FD E IG+R + PEG +Q+
Sbjct: 1486 KLFFMTRGGISKSSKGINLSEDIFAGYNNVVRGGAVGFREYIQVGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDIYRIGQRLDFCRLFSLYFGGIGHYFSNVLTVLTIYVVCYLLVILAIFDIEKIGERSITPEGTIQM 1624
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: B8CDT6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDT6_THAPS) HSP 1 Score: 187 bits (476), Expect = 2.250e-53 Identity = 95/139 (68.35%), Postives = 115/139 (82.73%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
++FF+T GG+SK+SKGINLSEDIFAGYN IRGGQ+ FKEY+QVGKGRDVGM QIY+FEAKLSQGA EQ+LSRDV RL RLDF RLLS+YFGG+G+Y N +TV+TV VVY + LA++D E IGDR + P G +Q+
Sbjct: 330 KLFFITRGGISKSSKGINLSEDIFAGYNNAIRGGQVAFKEYIQVGKGRDVGMSQIYQFEAKLSQGAGEQSLSRDVYRLCHRLDFSRLLSYYFGGIGHYFSNVLTVITVYVVVYLMAILALYDLEKIGDRLITPMGTIQM 468
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: A0A7S4R501_9STRA (1,3-beta-glucan synthase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R501_9STRA) HSP 1 Score: 190 bits (482), Expect = 2.760e-53 Identity = 95/139 (68.35%), Postives = 115/139 (82.73%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
++FF+T GG+SK+SKGINLSEDIFAGYN IRGGQ+ FKEY+QVGKGRDVGM QIYKFEAKLSQGA EQ+LSRDV RL RLDF+RLLS YFGG+G+Y N +T+LT+ V+Y + LA+FD E IGDR + P G +Q+
Sbjct: 1519 KLFFITRGGISKSSKGINLSEDIFAGYNNAIRGGQVGFKEYLQVGKGRDVGMSQIYKFEAKLSQGAGEQSLSRDVYRLCHRLDFYRLLSMYFGGIGHYFSNVLTILTIYIVIYLMAILALFDLEKIGDRLITPMGTIQM 1657
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Match: A0A1E7FFZ9_9STRA (1,3-beta-glucan synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFZ9_9STRA) HSP 1 Score: 189 bits (479), Expect = 7.000e-53 Identity = 97/139 (69.78%), Postives = 114/139 (82.01%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQV 417
++FF+T GGVSK+SKGINLSEDIFAGYN +RGG + FKEY+QVGKGRDVGM QIYKFEAKLSQGAAEQ+LSRDV R+ RLDF RLLSFY+GG+G+Y N +TVLTV VVY LA+FD E IGDR + P G +Q+
Sbjct: 1525 KLFFITRGGVSKSSKGINLSEDIFAGYNNVMRGGSVGFKEYLQVGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDVYRMCHRLDFCRLLSFYYGGIGHYFSNVLTVLTVYIVVYLSAVLAIFDLEKIGDRMITPMGTIQM 1663 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13505.2098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13505.2098.1 >prot_E-siliculosus-1a_F_contig13505.2098.1 ID=prot_E-siliculosus-1a_F_contig13505.2098.1|Name=mRNA_E-siliculosus-1a_F_contig13505.2098.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=135bp MTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQback to top mRNA from alignment at E-siliculosus-1a_F_contig13505:62..858- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13505.2098.1 ID=mRNA_E-siliculosus-1a_F_contig13505.2098.1|Name=mRNA_E-siliculosus-1a_F_contig13505.2098.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=797bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13505:62..858- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13505:62..858- >mRNA_E-siliculosus-1a_F_contig13505.2098.1 ID=mRNA_E-siliculosus-1a_F_contig13505.2098.1|Name=mRNA_E-siliculosus-1a_F_contig13505.2098.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13505:62..858- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |