mRNA_E-siliculosus-1a_F_contig1.21.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1.21.1
Unique NamemRNA_E-siliculosus-1a_F_contig1.21.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1contigE-siliculosus-1a_F_contig1:158146..159155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size432
Model size432
Exons3
Ec32 orthologEc-01_011890.1
Ec32 ortholog descriptionTransmembrane protein 107
Hectar predicted targeting categorysignal anchor
Best eggNOG OGNA|NA|NA
Best tax levelActinopterygii
COG Functional cat.S
EggNOG OGs2AP86@1,2RZG7@2759,3A1JP@33154,3BQA6@33208,3D74N@33213,48E4Z@7711,49B12@7742,4A3KX@7898
EggNOG free text desc.Transmembrane protein 107
GOsGO:0003002,GO:0005575,GO:0005623,GO:0005929,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0016043,GO:0021532,GO:0021915,GO:0022607,GO:0030030,GO:0030031,GO:0030326,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035869,GO:0036038,GO:0042733,GO:0042995,GO:0043009,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051641,GO:0060173,GO:0060271,GO:0060429,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904491,GO:1905515
Preferred nameTMEM107
Seed eggNOG ortholog7994.ENSAMXP00000013470
Seed ortholog evalue1.6e-09
Seed ortholog score69.3
Taxonomic scopeMetazoa
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1.21.1prot_E-siliculosus-1a_F_contig1.21.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1 158146..159155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.7430067-CDS-E-siliculosus-1a_F_contig1:158145..1583061622927499.7430067-CDS-E-siliculosus-1a_F_contig1:158145..158306Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 158146..158306 +
1696318552.5670235-CDS-E-siliculosus-1a_F_contig1:158145..1583061696318552.5670235-CDS-E-siliculosus-1a_F_contig1:158145..158306Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 158146..158306 +
1622927499.7581725-CDS-E-siliculosus-1a_F_contig1:158553..1587511622927499.7581725-CDS-E-siliculosus-1a_F_contig1:158553..158751Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 158554..158751 +
1696318552.577064-CDS-E-siliculosus-1a_F_contig1:158553..1587511696318552.577064-CDS-E-siliculosus-1a_F_contig1:158553..158751Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 158554..158751 +
1622927499.7727947-CDS-E-siliculosus-1a_F_contig1:159082..1591551622927499.7727947-CDS-E-siliculosus-1a_F_contig1:159082..159155Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 159083..159155 +
1696318552.5857933-CDS-E-siliculosus-1a_F_contig1:159082..1591551696318552.5857933-CDS-E-siliculosus-1a_F_contig1:159082..159155Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 159083..159155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1.21.1

>prot_E-siliculosus-1a_F_contig1.21.1 ID=prot_E-siliculosus-1a_F_contig1.21.1|Name=mRNA_E-siliculosus-1a_F_contig1.21.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=144bp
MQADGLVKLVSGRFLALTSHVVATVLLFFGKTPLVQIDLDTPQTMGQYEY
TDTWMTTLLELALMLMALEFVGLFSGHTIHQKNANALSALAHLGGFLATL
SMMLNGWTVRVYPYMFTLFSVVPACFDLLWWTFQMLARKLWPP*
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mRNA from alignment at E-siliculosus-1a_F_contig1:158146..159155+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1.21.1 ID=mRNA_E-siliculosus-1a_F_contig1.21.1|Name=mRNA_E-siliculosus-1a_F_contig1.21.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1010bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:158146..159155+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGCGGATGGGCTAGTGAAACTTGTGAGCGGCAGATTCTTGGCGCT
CACGTCCCACGTCGTTGCTACCGTCCTGCTCTTCTTCGGGAAGACGCCGT
TGGTTCAGATTGATCTGGATACACCACAAACGATGGGCCAATATGAGTAC
ACCGACACCTGGTGAGTGTTTGCTGTGTAAATACGCAATGACATGGCAAT
CCGCTGCGGTGCTCCAGCAAGCGCCAACTCCTAACCGTTGTTCCAGTGGT
GTTGTGGGATTTGGGTGTTGTTGGGTGGTGTGGCGGTGTGAAAAATGACG
TAAATTTGTGAAGCAAACAATCTCAAGGCCGACTGTACGAATGCGACTGG
TCGCCATTCGGTCGCCTTACATCCCCTTCACATACGCGTCGATATCTCGA
TTTCACAGGATGACTACTCTGCTAGAGCTTGCACTGATGTTGATGGCCTT
GGAGTTTGTCGGGCTTTTTTCGGGGCACACTATTCACCAGAAAAACGCCA
ACGCCTTGTCAGCTCTGGCGCACCTAGGAGGGTTCCTGGCGACGCTGTCA
ATGATGCTCAACGGATGGACCGTTCGTGTGTACCCTTACATGTTTACACT
TTTCAGGTACGAAAATCTGCCAAATCTGCTGTCCTTGTGAAGTGTATGCA
AACGTGTCGAGGTTCAAAACAACCCCGCTGGCCTTTTCTGACATGTTTAC
TTGGTATACCACTACAGTAATGTATTATTTGAATAAATAGTTCGCAACGA
GTGTTGATGTGTGCGCAGCGTGTGCTCCGGCCTGCTCCGCGTATTGTAGA
TGAGTTCTCTCTACGATATGGTCTACTTGGACAAAGAAAACTTCAACCAC
GTTGTCATCGGTTCGCCCATCGACGTTCCAACACTCTCACCCCGCCACCC
GCCCCACTTCTGAAAATACTCGTGGCAATAACGGCAGTGTGGTACCAGCC
TGCTTTGACCTGCTGTGGTGGACGTTCCAGATGCTCGCACGAAAACTCTG
GCCACCATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1:158146..159155+

>mRNA_E-siliculosus-1a_F_contig1.21.1 ID=mRNA_E-siliculosus-1a_F_contig1.21.1|Name=mRNA_E-siliculosus-1a_F_contig1.21.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:158146..159155+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGCGGATGGGCTAGTGAAACTTGTGAGCGGCAGATTCTTGGCGCT
CACGTCCCACGTCGTTGCTACCGTCCTGCTCTTCTTCGGGAAGACGCCGT
TGGTTCAGATTGATCTGGATACACCACAAACGATGGGCCAATATGAGTAC
ACCGACACCTGATGCAGGCGGATGGGCTAGTGAAACTTGTGAGCGGCAGA
TTCTTGGCGCTCACGTCCCACGTCGTTGCTACCGTCCTGCTCTTCTTCGG
GAAGACGCCGTTGGTTCAGATTGATCTGGATACACCACAAACGATGGGCC
AATATGAGTACACCGACACCTGGATGACTACTCTGCTAGAGCTTGCACTG
ATGTTGATGGCCTTGGAGTTTGTCGGGCTTTTTTCGGGGCACACTATTCA
CCAGAAAAACGCCAACGCCTTGTCAGCTCTGGCGCACCTAGGAGGGTTCC
TGGCGACGCTGTCAATGATGCTCAACGGATGGACCGTTCGTGTGTACCCT
TACATGTTTACACTTTTCAGGATGACTACTCTGCTAGAGCTTGCACTGAT
GTTGATGGCCTTGGAGTTTGTCGGGCTTTTTTCGGGGCACACTATTCACC
AGAAAAACGCCAACGCCTTGTCAGCTCTGGCGCACCTAGGAGGGTTCCTG
GCGACGCTGTCAATGATGCTCAACGGATGGACCGTTCGTGTGTACCCTTA
CATGTTTACACTTTTCAGTGTGGTACCAGCCTGCTTTGACCTGCTGTGGT
GGACGTTCCAGATGCTCGCACGAAAACTCTGGCCACCATAGTGTGGTACC
AGCCTGCTTTGACCTGCTGTGGTGGACGTTCCAGATGCTCGCACGAAAAC
TCTGGCCACCATAG
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