prot_E-siliculosus-1a_F_contig1.21.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1.21.1
Unique Nameprot_E-siliculosus-1a_F_contig1.21.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length144
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.21.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029248Transmembrane protein 107PFAMPF14995TMEM107coord: 9..128
e-value: 3.3E-20
score: 72.7
IPR029248Transmembrane protein 107PANTHERPTHR34341FAMILY NOT NAMEDcoord: 8..133
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 111..133
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 75..85
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 134..143
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 106..110
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..53
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 86..105
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 111..133
NoneNo IPR availableTMHMMTMhelixcoord: 84..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1contigE-siliculosus-1a_F_contig1:158146..159155 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1.21.1mRNA_E-siliculosus-1a_F_contig1.21.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1 158146..159155 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1.21.1 ID=prot_E-siliculosus-1a_F_contig1.21.1|Name=mRNA_E-siliculosus-1a_F_contig1.21.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=144bp
MQADGLVKLVSGRFLALTSHVVATVLLFFGKTPLVQIDLDTPQTMGQYEY
TDTWMTTLLELALMLMALEFVGLFSGHTIHQKNANALSALAHLGGFLATL
SMMLNGWTVRVYPYMFTLFSVVPACFDLLWWTFQMLARKLWPP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029248TMEM107