mRNA_E-siliculosus-1a_F_contig1336.2029.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1336.2029.1 vs. uniprot
Match: D7FQD3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQD3_ECTSI) HSP 1 Score: 775 bits (2001), Expect = 6.690e-279 Identity = 478/504 (94.84%), Postives = 483/504 (95.83%), Query Frame = 2
Query: 26 MEAVAGRLRVSCVRGLRWALRARRPPKPAPSYIFTTSQPGCLQAGHFSRLSSVTRPPSEHGHTDPAAAREAAEQGLRILRERSESLEQDDAVEAWRLLLKAACAETVPPDVYFALGNLHYIWGELLEFGKRAELGAEGAAKAVVAEIKDLRKQAMKKRQLAPGSFGSKGRAGKSPTKTTGMSDVSASGKDGRVLSDGAREAGGGRGTPPPEVDHPEAWEWYLKAALSGDTRAMMQLGDIALEAKTKSTANAQHAEEWYRKAALGNPPQPDACFQMARIHHEGIGVPCDPARARELYDEALQAGSSAAAYFLGQRFHVGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYFHGEDGFARDPRAAFRCYSSAADDGHADASYCLGVMQYAMGDAEEAFRRYQTAAEAGNVLAWRNLAAMYALGEGVARSEQMAKSILATFGDEIERREKEEKGAAEDGEEKR 1537
M AV GRLRVSC RGL WAL ARRPP PAPSYIFTTSQPGCL AGHFSRLSSVTRPPSEH HTDPAAAREAAEQGLRILRERSESLEQDDAVEAWRLLLKAACAETVPPDVYFALGNLHYIWGELLEFGKRAELGAEGAAKAVVAEIKDLRKQAMKKRQLAPGSFGSKGRAGKSPTKTT MSDVSA G DGRVLS GAREAGGGRGT PPEVD+PEAWEWYLKAALSGDTRAMMQLGDIALEAKTKS NAQHAEEWYRKAA+GNPPQPDACFQMARIHHEGIG PCDP RARELYDEALQAGSSAAAYFLGQRFHVGDE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+FHGEDGFARDPRAAFRCYSSAADDGHADASYCLGVMQYAMGDAEEAFRRYQTAAEAGNVLAWRNLAAMYALGEGVARSEQMAK+ILATFGDEIERREKEEK AA+DGEEKR
Sbjct: 1 MAAVVGRLRVSCGRGLWWALHARRPPNPAPSYIFTTSQPGCLHAGHFSRLSSVTRPPSEHEHTDPAAAREAAEQGLRILRERSESLEQDDAVEAWRLLLKAACAETVPPDVYFALGNLHYIWGELLEFGKRAELGAEGAAKAVVAEIKDLRKQAMKKRQLAPGSFGSKGRAGKSPTKTTRMSDVSARGNDGRVLSVGAREAGGGRGTTPPEVDYPEAWEWYLKAALSGDTRAMMQLGDIALEAKTKSAGNAQHAEEWYRKAAVGNPPQPDACFQMARIHHEGIGAPCDPTRARELYDEALQAGSSAAAYFLGQRFHVGDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAFFHGEDGFARDPRAAFRCYSSAADDGHADASYCLGVMQYAMGDAEEAFRRYQTAAEAGNVLAWRNLAAMYALGEGVARSEQMAKNILATFGDEIERREKEEKRAAKDGEEKR 504
BLAST of mRNA_E-siliculosus-1a_F_contig1336.2029.1 vs. uniprot
Match: A0A835YR63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR63_9STRA) HSP 1 Score: 109 bits (272), Expect = 4.840e-23 Identity = 107/277 (38.63%), Postives = 130/277 (46.93%), Query Frame = 2
Query: 740 IALEAKTKSTANAQHAEEWYRKAALGNPPQPDACFQMARIHHEGIGVPC-DPARARELYDEALQAGSSAAAYFLGQRFHVGD-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYFHGEDGFARDPRAAFRCYSSAADDG-----------------HADASYCLGVMQY----AMGDAEEAFRRYQTAAEAGNVLAWRNLAAMYALGEGVARSEQMAKSILATFGDEIERREKE 1501
+A++ +S AN AE WY +AA G PP PDA FQ+AR++HEG+G DP RA ELY A GSSAA + LG VGD E XXXXXXXXXXXXXXXXXXXX + G G R A + A HA+A+YC VM+Y D AF YQTAAEAG+VLAWR +A+M+ LGEGV R E A+ I+ G I + E+E
Sbjct: 1 MAMQDPGESAANTPFAEHWYLRAAAGAPPLPDALFQLARVYHEGLGPAGEDPVRALELYQRAAAEGSSAALFLLGHAHSVGDAELGLPRDARAALAYLQRSADIDEHPEAXXXXXXXXXXXXXXXXXXXXEGRYVELVARAAAAGSANALFAEGDLWRRGLAGRERSEEKALHWFELAXXXXXXXXXXXXXXXXXXXXXHAEAAYCAAVMRYHGWGCDKDLRAAFELYQTAAEAGHVLAWREVASMHMLGEGVPRCEATARHIMQVMGKAIHKAEQE 277
BLAST of mRNA_E-siliculosus-1a_F_contig1336.2029.1 vs. uniprot
Match: A0A7S3L9E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9E1_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 5.080e-12 Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 2
Query: 1205 FHGEDGFARDPRAAFRCYSSAADDGHADASYCLGVMQYAMG----DAEEAFRRYQTAAEAGNVLAWRNLAAMYALGEGVARSEQMAKSI 1459
+HGE+G+ R+ A + AAD GHADA+ G M ++ D +AF YQ A E GN+ WRN+AA YA GEGVA+S +MAK I
Sbjct: 34 YHGENGYPRNLHLALGDFLKAADAGHADAAVSAGAMLHSGDGVPKDQNKAFELYQHAGELGNLEGWRNVAACYATGEGVAQSLEMAKHI 122
BLAST of mRNA_E-siliculosus-1a_F_contig1336.2029.1 vs. uniprot
Match: A0A6S7AH26_9BURK (Uncharacterized protein n=5 Tax=Achromobacter TaxID=222 RepID=A0A6S7AH26_9BURK) HSP 1 Score: 57.8 bits (138), Expect = 3.360e-5 Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 2
Query: 671 EAWEWYLKAALSGDTRAMMQLGDIALEAKTKSTANAQHAEEWYRKAALGNPPQPDACFQMARIHHEGIGVPCDPARARELYDEALQAGSSAAAYFL 958
EA+ W+ +AA +G+ ++ LG L+ K + A W+ +AA + DA + I++ G VP D ARAR L++EA++ GS+ A FL
Sbjct: 225 EAFRWWQRAAEAGEPQSQNLLGLAYLQGKWGVDQDPPVAVSWFERAAAQS--DRDALVNLGEIYYLGEIVPVDYARARSLFEEAIEQGSARAPRFL 318
BLAST of mRNA_E-siliculosus-1a_F_contig1336.2029.1 vs. uniprot
Match: A0A2S0IBB8_9BURK (Uncharacterized protein n=1 Tax=Achromobacter spanius TaxID=217203 RepID=A0A2S0IBB8_9BURK) HSP 1 Score: 56.6 bits (135), Expect = 7.770e-5 Identity = 33/103 (32.04%), Postives = 55/103 (53.40%), Query Frame = 2
Query: 671 EAWEWYLKAALSGDTRAMMQLGDIALEAKTKSTANAQHAEEWYRKAALGNPPQPDACFQMARIHHEGIGVPCDPARARELYDEALQAGSSAAAYFLGQRFHVG 979
EA++W+ AA +G+ ++ LG +E K + A W+ +AA + D + I++ G VP D ARAR L++EA++ GS+ A FL ++ G
Sbjct: 225 EAFKWWQHAAEAGEPQSQNLLGLAYVEGKWGVDRDPAVAVSWFERAAAQS--DRDGLVNLGEIYYLGEIVPVDYARARSLFEEAIEQGSARAPRFLSWIYYNG 325 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1336.2029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1336.2029.1 >prot_E-siliculosus-1a_F_contig1336.2029.1 ID=prot_E-siliculosus-1a_F_contig1336.2029.1|Name=mRNA_E-siliculosus-1a_F_contig1336.2029.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=505bp MEAVAGRLRVSCVRGLRWALRARRPPKPAPSYIFTTSQPGCLQAGHFSRLback to top mRNA from alignment at E-siliculosus-1a_F_contig1336:17400..20845+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1336.2029.1 ID=mRNA_E-siliculosus-1a_F_contig1336.2029.1|Name=mRNA_E-siliculosus-1a_F_contig1336.2029.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3446bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1336:17400..20845+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1336:17400..20845+ >mRNA_E-siliculosus-1a_F_contig1336.2029.1 ID=mRNA_E-siliculosus-1a_F_contig1336.2029.1|Name=mRNA_E-siliculosus-1a_F_contig1336.2029.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3030bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1336:17400..20845+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |