prot_E-siliculosus-1a_F_contig1335.2025.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1335.2025.1
Unique Nameprot_E-siliculosus-1a_F_contig1335.2025.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length339
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1335.2025.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 625 bits (1612), Expect = 2.040e-225
Identity = 329/338 (97.34%), Postives = 334/338 (98.82%), Query Frame = 0
Query:    1 MQGPSNKSVAALAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLESPMKRVACVSYRVNVVRVVDSRTAKKKASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETVEIFLDDHDPIADLEAVAQAGTGKRRPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLSAIEDRSAERPALTGSGHNAPPASKGLLG 338
            M+GPSNKSVA LAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTL+SPMKRVACVSYRVNVVRVVDSRTAKKKASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETV+IFLDDHD IADLEAVAQAGTGKRRPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVL+ IEDRS ERPALTGSGH+APPASKGLLG
Sbjct:    1 MRGPSNKSVAVLAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLQSPMKRVACVSYRVNVVRVVDSRTAKKKASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETVQIFLDDHDSIADLEAVAQAGTGKRRPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLATIEDRSVERPALTGSGHSAPPASKGLLG 338          
BLAST of mRNA_E-siliculosus-1a_F_contig1335.2025.1 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 4.230e-69
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 0
Query:  218 EVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLSAIEDRSAERPALTGSGHNAPPASKGLLG 338
            +VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVL+AIEDRSAERPALT SGH+APPASKGL G
Sbjct:    2 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLAAIEDRSAERPALTESGHSAPPASKGLQG 122          
BLAST of mRNA_E-siliculosus-1a_F_contig1335.2025.1 vs. uniprot
Match: A0A836C8K9_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K9_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.140e-36
Identity = 105/301 (34.88%), Postives = 147/301 (48.84%), Query Frame = 0
Query:   35 LNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLESPMKRVACVSYRVNVVRVVDSRTAK--KKASVGG-----IWGVLGGIASVVPWLCS--FAATAQVDTEKWDTVYQAISSRGETVEIFLDDHDPIADLEAVAQAGTGKR------RPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEE-----------------VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYV 303
            + QS+ LR G     D A L VGDYV +RG V A    L SP + V CV Y    VRV+D R  +     SV G     +  + G I S +  L     + + + + ++W    Q +S                       Q GT +R      R  + +DL+GAE+  +E V  +FE  +  G    RT LGYRTTEE                 VL VG+ +IV+GE+G      +  +V+R + P ++LD+KT S++RPFVAS  SE  LL  IER+GRIYFW A+P++  G+A   V
Sbjct:    1 MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGAD-EALTSPGQAVQCVRYIRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSVSRKTERDEWGMETQELSR----------------------QEGTARRMTLSGARGSIVLDLSGAEYLELETVQDDFENSQDVGSDGRRT-LGYRTTEEXXXXXXXXXXXXXXXXXVLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVALLAV 277          
BLAST of mRNA_E-siliculosus-1a_F_contig1335.2025.1 vs. uniprot
Match: A0A6V1PF55_HETAK (RING-type E3 ubiquitin transferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PF55_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 1.850e-13
Identity = 85/318 (26.73%), Postives = 145/318 (45.60%), Query Frame = 0
Query:    4 PSNKSVAALAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGAR--TLESPMKRVACVSYRVNVVRVVDSRTAKKKASVG-----GIWGVLGGIASVV------PWLCSFAATAQVDTEKWDTVYQAISSRGETVEIFLDDHDPIADLEAVAQAGTGKRRPRVRVDLAGAEFF--SMEQVASEFEAEKATGKVS-SRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGV 305
            P + S  AL + A   S  +  F    FRR   +SK LR     + + A +  G YV ++G +       +L SP  +  CV Y++  +RVV+  +A KK+  G     G   V G   + V        + +++  A V+   W   ++ + +  E   + L D              TG     + ++ AGA++F  +    +  F AEK   K   +R  LG +  EEVL VG +++V GEV ++ +  +  +V+R+AA  S+ D + T I++PF+ +      LL ++E+SG    W       +G+   Y G+
Sbjct:    7 PRDNSSLALGIGA-IASFGISCFCGSLFRRANEKSKLLRI--TKKVNVAGVQEGQYVMLQGCLVPKDEEGSLISPESQQPCVMYKMTKIRVVEELSAVKKSKTGQKKGTGTKNVAGDRTTCVGEERKEEKVENYSDQA-VEQNDWKVKHEVMENNTEKTAMCLKDK-------------TGS----IAIETAGAQYFYGTGWGTSERFIAEKEELKRGQTRRALGIKILEEVLPVGQKVLVFGEV-QNSDDDDAPLVVRRAAARSMFD-RRTGIAKPFIVTCFGRTELLAQVEQSGVALAWTGGIFFLIGVGCTYFGL 301          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1335.2025.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FLV1_ECTSI2.040e-22597.34RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5LN52_9PHAE4.230e-6995.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8K9_9STRA8.140e-3634.88RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A6V1PF55_HETAK1.850e-1326.73RING-type E3 ubiquitin transferase n=1 Tax=Heteros... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022170E3 Ubiquitin ligase, GIDE-typePFAMPF12483GIDEcoord: 132..298
e-value: 8.6E-13
score: 48.0
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 310..338
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..284
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 285..309
NoneNo IPR availableTMHMMTMhelixcoord: 10..28
NoneNo IPR availableTMHMMTMhelixcoord: 284..306
NoneNo IPR availableTMHMMTMhelixcoord: 106..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1335contigE-siliculosus-1a_F_contig1335:14065..17846 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1335.2025.1mRNA_E-siliculosus-1a_F_contig1335.2025.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1335 14039..18845 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1335.2025.1 ID=prot_E-siliculosus-1a_F_contig1335.2025.1|Name=mRNA_E-siliculosus-1a_F_contig1335.2025.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=339bp
MQGPSNKSVAALAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPD
AASLAVGDYVRVRGTVSAGARTLESPMKRVACVSYRVNVVRVVDSRTAKK
KASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETVE
IFLDDHDPIADLEAVAQAGTGKRRPRVRVDLAGAEFFSMEQVASEFEAEK
ATGKVSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAP
SSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAF
AYVGVLRVLSAIEDRSAERPALTGSGHNAPPASKGLLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022170GIDE