mRNA_E-siliculosus-1a_F_contig1333.2016.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE) HSP 1 Score: 432 bits (1112), Expect = 4.560e-147 Identity = 225/275 (81.82%), Postives = 237/275 (86.18%), Query Frame = 2
Query: 44 RQLPHWKTVTFREKIDKVVADTSKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPQAST*LPCRGWCTMFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNTDTLMQELRNFDVVKGGATTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNAFRSASPGRSDGGYGGRRVMTVEDMEYEDECAEFKRVYDIHASPRTNSQANDCPFFTWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 868
R + +T+TFREKIDKV ADTSKKMEEGSTG++AL FL SALGRVVSSSSPEKLVYDLQTFA PTGTP + +G G+VTPQDNTIQLAVRESVSDQYSVLTASVFKGKE GVVPFDN DTLM ELRNF+ VKGGATTPTR MAQVK SSG RQGQR GGG TGSGGTN FRSASPGRSDGGYGGR VMTVEDM+YEDECAEFKRVYDIHA+PRTNSQA DCPFF WFTSVEEKDRHR+AFG RCLNCGSEGHFVRDCDKGYI
Sbjct: 234 RSMSPAQTMTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHELRNFEAVKGGATTPTRMMAQVKSSSGWRQGQRGCGGGRTGSGGTNTFRSASPGRSDGGYGGR-VMTVEDMDYEDECAEFKRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRQAFGLRCLNCGSEGHFVRDCDKGYI 507
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE) HSP 1 Score: 418 bits (1075), Expect = 2.450e-144 Identity = 221/273 (80.95%), Postives = 233/273 (85.35%), Query Frame = 2
Query: 65 TVTFREKIDKVVADTSKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPQAST*LPCRGWCTMFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNTDTLMQELRNFDVVKGGATTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNA-----FRSASPGRSDGGYGGRRVMTVEDMEYEDECAEFKRVYDIHASPRTNSQANDCPFFTWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 868
T+TFREKIDKV ADTSKKM+EGSTG++ALTFL SAL RVVSSSSPEKLVYDLQT AVPTGTP + +G G+VTPQDNTIQLAVRESVSDQYSVLTAS+FKGKEL VV FDN DTLM ELRNF+ VKGGATTPTRRMAQVK SSG RQGQR GGG TGSGGTN RSASPGRSDGGYGGR VMTVEDM+YEDECAEF+RVYDIHA+PRTNSQA DCPFF WFTSVEEKDRHRRAFG RCLNCGSEGHFVRDCDKGYI
Sbjct: 37 TITFREKIDKVFADTSKKMDEGSTGKKALTFLTSALWRVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHELRNFEAVKGGATTPTRRMAQVKSSSGWRQGQRGGGGGRTGSGGTNTRVMTGXRSASPGRSDGGYGGR-VMTVEDMDYEDECAEFQRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYI 308
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI) HSP 1 Score: 410 bits (1054), Expect = 9.720e-143 Identity = 207/250 (82.80%), Postives = 219/250 (87.60%), Query Frame = 2
Query: 119 MEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPQAST*LPCRGWCTMFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNTDTLMQELRNFDVVKGGATTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNAFRSASPGRSDGGYGGRRVMTVEDMEYEDECAEFKRVYDIHASPRTNSQANDCPFFTWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 868
M GSTGR+ALTFL SALGRVVSSSSPEKLVYDLQTF VPTGTP + G GIVTPQDNTIQLAVRESVSDQYSVLTASVFKGK+LG+VPFDN DTLMQELRNF+ VKGGATTPTRR AQVKGSSGGRQGQ+R+GGGGTGSGGTN FRSASPGR DGGYGGRRVMTV++++ EDECAEF+RVYDIH SPRTNSQ DCPFF WFTSVEEKDRHRRAFGSRCL CGSEGHFVRDCDKGYI
Sbjct: 1 MARGSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQELRNFEAVKGGATTPTRRSAQVKGSSGGRQGQKRDGGGGTGSGGTNTFRSASPGRLDGGYGGRRVMTVDEVDCEDECAEFQRVYDIHVSPRTNSQMKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSEGHFVRDCDKGYI 250
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE) HSP 1 Score: 380 bits (975), Expect = 3.650e-130 Identity = 202/268 (75.37%), Postives = 214/268 (79.85%), Query Frame = 2
Query: 65 TVTFREKIDKVVADTSKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPQAST*LPCRGWCTMFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNTDTLMQELRNFDVVKGGATTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNAFRSASPGRSDGGYGGRRVMTVEDMEYEDECAEFKRVYDIHASPRTNSQANDCPFFTWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 868
T+TFREKI KV +DTSKK+EEGSTGR+AL FL SALGRVV+SSSPEK+VYDLQTFAVPTGTP +G +VTPQDNTIQLAVRE VSDQYSVLTASV KGKELGVV FDN PTRRMAQVKGSSGGRQGQR +GGG TGSGG N FRSASPGRSDGGYGGRRVMTVEDM+YED+C EFKRVY IH+SPRTNSQ NDCPFF WFTSVEEKDRHRRAFGSRCLNCGSEG FVRDC KGYI
Sbjct: 6 TITFREKIGKVFSDTSKKIEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQFDNX-------------------PTRRMAQVKGSSGGRQGQRCDGGGRTGSGGGNTFRSASPGRSDGGYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPRTNSQVNDCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGQFVRDCVKGYI 254
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE) HSP 1 Score: 277 bits (709), Expect = 5.870e-85 Identity = 158/246 (64.23%), Postives = 167/246 (67.89%), Query Frame = 2
Query: 131 STGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPQAST*LPCRGWCTMFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNTDTLMQELRNFDVVKGGATTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNAFRSASPGRSDGGYGGRRVMTVEDMEYEDECAEFKRVYDIHASPRTNSQANDCPFFTWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 868
+TG++AL FL SALGRVVSSSSPEKLVYDLQTFAVPTGTP + +G IVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG RNF VKGG FRSASPGRSDGGYGGR VMTVEDM+YEDECAEFKRVYDIHA+PRTNSQA DCPFF WFTSVEEKDRHRRAFG CLNCGSEGHFVR +G +
Sbjct: 457 ATGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG--------------RNFKAVKGGGKDSDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRSASPGRSDGGYGGR-VMTVEDMDYEDECAEFKRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLTCLNCGSEGHFVRIVIRGTL 687
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: A0A6H5K8R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE) HSP 1 Score: 233 bits (593), Expect = 1.160e-71 Identity = 128/170 (75.29%), Postives = 140/170 (82.35%), Query Frame = 2
Query: 65 TVTFREKIDKVVADTSKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPQAST*LPCRGWCTMFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNTDTLMQELRNFDVVKGGATTPTRRMAQVKGSSGGRQGQRREGGGGTGS 574
T+TFREKIDK+ +DTSKKMEE STGR+AL FL SALGRVVSSS PEKLVYDLQT AVPTGTP +G GIVTPQDNTIQLAV ESVSDQ SVLTA VF+GKELGVV FD+ DTLM E+R+F+ V+GGATTPTRRMAQVKGSSGGRQGQRR+GGG TGS
Sbjct: 152 TMTFREKIDKIFSDTSKKMEERSTGRKALAFLTSALGRVVSSSLPEKLVYDLQTLAVPTGTPYGEYLTTLQGLVHSVRNLGIVTPQDNTIQLAVGESVSDQDSVLTACVFRGKELGVVTFDHIDTLMHEVRSFEAVEGGATTPTRRMAQVKGSSGGRQGQRRDGGGRTGS 321
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE) HSP 1 Score: 149 bits (376), Expect = 7.360e-37 Identity = 103/281 (36.65%), Postives = 151/281 (53.74%), Query Frame = 2
Query: 47 QLPHWKTVTFREKIDKVVADTSKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPQAST*LPCRGWCTMFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNTDTLMQELRNFDVVKGGATTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNAFRSA-SPGRSDGGYG-----GRRVMTVEDMEYEDECAEFKRVYDIHAS-PRTNSQANDCPFFTWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 868
+LP+ + + + KI + T ++++ G GR+AL FL+ L R +S ++P+ +V+ LQ V GTP + R + G + QDN +QLAVR+SV DQYS + VFKG++L VP+D+ LM L AT R + V+ R GQ GGG S GT ++ SA S GR YG G RVM + + E EDE EFK+V+ + + + PF+T F S +E+D R+A+G +CLNCG + HFVR+C +I
Sbjct: 531 RLPNAQGLDLKAKITSSFSQTRQQLDNGMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFKGRDLMAVPYDSIRDLMDALEVLAWNTTEATAVKRNVISVQTK---RAGQ----GGGNASAGTTSYASAASAGRM---YGKQPSQGARVMNIHE-EMEDEEKEFKKVHYVATQWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFI 800
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: A0A6H5JYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.370e-28 Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 2
Query: 119 MEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPQAST*LPCRGWCTMFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG 412
MEEGSTG++AL FL SALG+VVSSSSPEKLVYDLQ FAVPTGTP + +G GIVTPQDNTIQLAVRESVSDQ+ +G+ +G
Sbjct: 1 MEEGSTGKKALAFLTSALGKVVSSSSPEKLVYDLQRFAVPTGTPNSEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQHKCFDRFRVQGQGVG 98
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE) HSP 1 Score: 113 bits (282), Expect = 3.280e-25 Identity = 93/282 (32.98%), Postives = 140/282 (49.65%), Query Frame = 2
Query: 56 HWKTVTFREKIDKVVADTSKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPQAST*LPCRGWCTMFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNTDTLMQELRNFDVVKGGATTPT-------------RRMAQVKGSSGGRQGQRREGGGGTGSGGTNAFRSASPGRSDGGYGGRRVMTVEDMEYEDECAEFKRVYDIHASPRT-NSQANDCPFFTWFTSVEEKDRHRRAFGSRCLNCGSEG--HFVRDC 853
H K+ ++ + V + + M+ G +G AL L+ A+ +S+ +P ++ LQ FAVP GT + + G +D T+Q+AV+ V+DQY+ LTA VF G+ +P+D+ ++LM+ L D + TT T R A + SS GR G GGG+ SG + S +P G G R VMTV +Y+DE EF +V + + +D PF+ FT+ +E+DR RR FG +CLNCG E H R+C
Sbjct: 69 HAKSAATKQILVAAVNQSVRAMDSGMSGPDALQLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFA--EDGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEAL---DDMTDNTTTATASVRLRGVGSVLPRGQADMSVSSRGRYG-----GGGSFSGAKSG--SLTP---QGSAGARAVMTV--AQYDDESREFWQVSQVSRGNKGFGRNDDDPPFYVQFTNNKERDRARREFGPKCLNCGVEEPFHLAREC 333
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Match: A0A6H5K9S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S7_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.190e-17 Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query: 119 MEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTP 250
MEEGSTGR+ALTFL SALGRVVSSSSPEKLVYDLQTFAVPTGTP
Sbjct: 1 MEEGSTGRKALTFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTP 44 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1333.2016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1333.2016.1 >prot_E-siliculosus-1a_F_contig1333.2016.1 ID=prot_E-siliculosus-1a_F_contig1333.2016.1|Name=mRNA_E-siliculosus-1a_F_contig1333.2016.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=193bp MFGTWGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNTDTback to top mRNA from alignment at E-siliculosus-1a_F_contig1333:30375..31857- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1333.2016.1 ID=mRNA_E-siliculosus-1a_F_contig1333.2016.1|Name=mRNA_E-siliculosus-1a_F_contig1333.2016.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1483bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1333:30375..31857- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1333:30375..31857- >mRNA_E-siliculosus-1a_F_contig1333.2016.1 ID=mRNA_E-siliculosus-1a_F_contig1333.2016.1|Name=mRNA_E-siliculosus-1a_F_contig1333.2016.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1158bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1333:30375..31857- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |