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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1331.2007.1 vs. uniprot
Match: D8LJH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH5_ECTSI) HSP 1 Score: 276 bits (707), Expect = 4.090e-85 Identity = 165/291 (56.70%), Postives = 201/291 (69.07%), Query Frame = 1
Query: 61 DVFAFFEYLAEAFTEDDARFFSANDNKRLDDVVLMAEKWIPVLMSFVGNGFD---------RNHISRKVFQKGLGRIEQRFPALKNRSSVVNGADSKTGAPRPPFVSTSGTVVPISKQVLQEYVLDSDVKGHRGRVMFLCFAVFVVDRALSQKHEEGLDVPQRFKRLWKAMPSSAKPLKDLLLSSAECLTAVDSKGE-EEAFFDASRLRFFDLQKEAEAESGVGEDG--KKHGLPGTQLPSESRRVVATCERGKFYLSLTTSVLKNLGLVVDDGTWTNKSVEVTLRVEAED 897
DV A + + EAFTEDDA +FSANDNKRL VV MAEKWIPVLMSFVG + + I++KVF+KG GRIE++FPAL N S++++G ++++G P FVSTS TVVP++KQVL EY+ KG+ RVM+L FAV VVDRALS + ++ DVPQRF LW AMP+ KPLKD LLSSA+ L DS GE E FFD SRLRFFD QK A+SGVG G K G+ G S+S RVVATC RG FY S+ TS LK+LG+V D G NK+V VTL V+ ED
Sbjct: 75 DVRALYNCVLEAFTEDDAAYFSANDNKRLAAVVRMAEKWIPVLMSFVGGSYKDDGMGRDVFQTGITKKVFKKGFGRIERKFPALTNTSTLISGCNTRSGELIPAFVSTSTTVVPVNKQVLLEYIDPCTEKGYDARVMYLTFAVLVVDRALS-RGQKCDDVPQRFHDLWAAMPNCTKPLKDALLSSADDLVLRDSNGEIGEYFFDDSRLRFFDAQK---ADSGVGVSGVGKDQGVSGNPQSSKSSRVVATCARGIFYGSVPTSFLKDLGVVTDAG---NKAVYVTLAVDDED 358
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1161 |
| Model size | 1575 |
| Exons | 5 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog | Ec-07_006190.1 |
| Ec32 ortholog description | Hypothetical protein |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927852.5466998-UTR-E-siliculosus-1a_F_contig1331:23938..24190 | 1622927852.5466998-UTR-E-siliculosus-1a_F_contig1331:23938..24190 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1331 23939..24190 - |
| 1696318708.5354197-UTR-E-siliculosus-1a_F_contig1331:23938..24190 | 1696318708.5354197-UTR-E-siliculosus-1a_F_contig1331:23938..24190 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1331 23939..24190 - |
| 1622927852.6395876-UTR-E-siliculosus-1a_F_contig1331:26865..27027 | 1622927852.6395876-UTR-E-siliculosus-1a_F_contig1331:26865..27027 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1331 26866..27027 - |
| 1696318708.5878396-UTR-E-siliculosus-1a_F_contig1331:26865..27027 | 1696318708.5878396-UTR-E-siliculosus-1a_F_contig1331:26865..27027 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1331 26866..27027 - |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1331.2007.1 >prot_E-siliculosus-1a_F_contig1331.2007.1 ID=prot_E-siliculosus-1a_F_contig1331.2007.1|Name=mRNA_E-siliculosus-1a_F_contig1331.2007.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=387bp
MAEKWIPVLMSFVGNGFDRNHISRKVFQKGLGRIEQRFPALKNRSSVVNG
ADSKTGAPRPPFVSTSGTVVPISKQVLQEYVLDSDVKGHRGRVMFLCFAV
FVVDRALSQKHEEGLDVPQRFKRLWKAMPSSAKPLKDLLLSSAECLTAVD
SKGEEEAFFDASRLRFFDLQKEAEAESGVGEDGKKHGLPGTQLPSESRRV
VATCERGKFYLSLTTSVLKNLGLVVDDGTWTNKSVEVTLRVEAEDAPEEE
SIAADPEDNEDTVEPRHDGQPTKRSRSSAESSENELKPRTCGQPGCTILP
SFGALGDKKVQFCSEHAVDGTVKLIGKNSTARVGLGQKRSRVTSSSDLVD
PCSSNTSGSSKRARPLHGLPPPLVSVPVKVEPATAS* back to topmRNA from alignment at E-siliculosus-1a_F_contig1331:23939..27027- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1331.2007.1 ID=mRNA_E-siliculosus-1a_F_contig1331.2007.1|Name=mRNA_E-siliculosus-1a_F_contig1331.2007.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3089bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1331:23939..27027- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGTCGAACGATGCAAAGAGCGGCTTGTCAGGTGCCGAGTCGGAGATCAA
GTGTGATCCTGACGTGTTCGCATTTTTCGAATACCTGGCTGAAGCATTCA
CGGAGGACGATGCGAGATTTTTTAGTGCCAATGACAACAAGCGCCTTGAC
GACGTCGTACTGATGGCGGAGAAGTGGATTCCAGTCCTGATGTCATTCGT
AGGCAATGGTTTTGACAGGAACCACATCAGTCGGAAGGTATTTCAAAAGG
GTTTGGGAAGGATCGAACAGAGATTCCCGGCCCTGAAGAACAGGTCTTCC
GTGGTGAATGGCGCCGATTCCAAGACTGGAGCGCCTCGTCCTCCGTTCGT
GTCAACCTCGGGTACCGTCGTACCCATCAGCAAACAAGTGCTGCAGGAGT
ACGTGGTGGGTGTCGACGATTGAGTGTTCCTCTGTCAATTACAAGTAAAT
TGAGGTCTTCGTGCTCTGTTGCATATCTGCGGTGCCCACTCTGGGTGCTC
CACTGTTAGTACGGGTTGCACGCATGCGCCGTCCTCCAGTTTCATCATTG
TTTCATGAGTTCCCGCTAACTTCTCTGCTTCGTGTTTCTACACCCGACCT
GTACTGCCTCTTCTCTCTCAGCTTGACTCAGATGTCAAGGGCCACCGTGG
CAGGGTGATGTTCTTGTGCTTCGCGGTCTTTGTGGTCGACCGTGCCCTGT
CCCAAAAACACGAGGAAGGCCTAGATGTACCTCAGAGGTTCAAACGCCTC
TGGAAGGCTATGCCAAGTAGCGCGAAGCCGCTGAAGGATCTACTTCTGTC
CAGCGCCGAATGCCTGACGGCGGTCGATTCGAAAGGGGAGGAAGAAGCCT
TCTTCGACGCCAGCCGCCTTCGTTTTTTTGACCTCCAAAAAGAAGCGGAG
GCGGAATCGGGCGTCGGCGAGGACGGCAAAAAACACGGCAAGTATTCTAT
ACACATAGTATTGATACTTTGAGATTTATTACAGTGAGATTGCCTTTCGT
CTGCTGAACCCGTCATTGCCTAGGGGAGGGTGGTGCGGGCAGCTAACTGC
TTTTAACTGTTCGTATTCTTATGCTGCATGATTCTCGTTATACGAGAAAC
GGAGCTATGCCGCCGCGTGGCCAATGTTGTCAGGCCCCGGTGCTCAACTC
GTCGCAATCAGCACTTGTTTCGGATAGCAACGGATTGATGGCTGGGCACC
AACAAGGAGGAGTCTGTGTCTCGCTGTCAACCACCGTGGAGCTACGCCGC
TTTGTACCCAATGCTGTTGCCCCCCTGTCGTTTCCCACCCCTTCGAAATT
CTGGACAGGTTTGCCGGGAACTCAGCTTCCCTCGGAGAGTCGTCGGGTGG
TAGCTACGTGCGAACGAGGGAAATTCTATCTCTCACTAACAACGTCCGTG
TTGAAGAATCTTGGCCTGGTCGTGGATGACGGGACATGGACAAATAAATC
CGTGGAAGTGACCCTGAGGGTCGAAGCTGAAGATGCTCCTGAGGAAGAAT
CGTGAGTGCTGCGGAGTACCTGAGGAAGAAAATGTTGGGACAACGCCATC
CAGAATTTAATGTGGTGATCCAGGTGTACACAATTGTCGACAATATCAGT
ACTTGTTGTGCACGGTAAGAATACCTTTCCGTCTCGTCTGTTCATGCTTG
GCATTGCATCGTACCATATTGTATTCGTAACGACGACGAGCGTCTATAGC
TTCATATCCTCAGCGATGGTGTTTTCTGTGCGGTTGCCACCAGCGGTATT
GTCGATGGAGGGAGAAAACCAAACGATGGCATCGCCCACAAAACATGTTC
CAGGTGTGACGTTTCGTTTCTCTTGAAATGTGTATAGGAACGTCTCCTTG
ACGAAATGTTCGGGCAACGCCCGTAAGTAGTTCGAAAGGGTGAGCCTGTG
GGGTCCTCTCATTTTCATGTGTGAGATGATGCGTTGTCGTAGACCAACGA
CGGCTATCTCGAAGATGCAAGTTGGCATACCCAAGATGAAATGACGCAGA
CAAGCCTCAGGAGCAATGGAATTTTGTTCTGCATGTCTCGGCGTAGGTTA
GGTTGGCGTCACATGCTGCTTATCATCATGAATTCATTGGATCGCATGTG
TATATCTCGGGGCTGGACCTAAATTTTCCAATACATCTATGCTCGATTGC
GGTTGCATACACTCCGTTGATTGCATGACCGTTTGTTCTCGCGCTACACC
TTGGTCTTCACAGCATTGCGGCAGACCCTGAGGACAACGAGGACACCGTG
GAGCCTCGTCATGACGGTCAACCGACCAAGCGCTCGCGTTCCTCGGCCGA
GTCGTCGGAGAACGAGCTAAAACCAAGGTATTTGAAATGTCGATATCACG
GCGTTGGGTTCTAGAGCGATGAATGCATACCGCCCAAGGTCTTACGCCAT
CCAGTCAAAGACTCCTTACCTGCCATACACGAACTGTGGCATGGCACTCC
CTCTCCGTAGGACATTTCTTGGCCTATTACTACATGAAGTTTCCCCCGCC
TTGACATCCGATGATGCCTTTCCCCGGGGGCGACCACTTCAGGACGTGCG
GACAACCAGGCTGTACCATCCTCCCGTCATTTGGCGCGCTCGGTGACAAG
AAGGTGCAGTTCTGCTCTGAGCACGCGGTGGATGGGACGGTCAAGCTCAT
AGGCAAGAACAGCACCGCACGCGTAGGCCTGGGCCAGAAACGTTCGCGCG
TGACGTCGTCAAGTGATCTGGTGGACCCTTGCTCTAGCAACACGTCTGGG
TCAAGCAAGCGGGCCCGCCCCCTCCATGGACTGCCTCCTCCGTTGGTCAG
CGTGCCAGTCAAGGTAGAGCCAGCGACCGCATCATGAGTCCATTTGAAGC
TAAAAGGGGTACCGTGTCTTGTGCGTCATTGTGCTTCTGCGTGCCTCCTA
GCCTCGTGCGCTCGTGCGCGCCCGCCGCGCCCGTACGTTGTGCGGTGTAC
CGCACCTAGACGACGAAAGGGAGGGCATGATCAGCGCGCCCTCGTGGGAG
GGGCTAGCCCAGGCTGTTGCGGGACAAGAGTATAGCCAAGACGGTTCTCG
GCGTGCGATGAAAGAAGTAGACTAGACTCGGAGTCCACC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1331:23939..27027- >mRNA_E-siliculosus-1a_F_contig1331.2007.1 ID=mRNA_E-siliculosus-1a_F_contig1331.2007.1|Name=mRNA_E-siliculosus-1a_F_contig1331.2007.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2322bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1331:23939..27027- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGAGAAGTGGATTCCAGTCCTGATGTCATTCGTAGGCAATGGTTT
TGACAGGAACCACATCAGTCGGAAGGTATTTCAAAAGGGTTTGGGAAGGA
TCGAACAGAGATTCCCGGCCCTGAAGAACAGGTCTTCCGTGGTGAATGGC
GCCGATTCCAAGACTGGAGCGCCTCGTCCTCCGTTCGTGTCAACCTCGGG
TACCGTCGTACCCATCAGCAAACAAGTGCTGCAGGAGTACGTGATGGCGG
AGAAGTGGATTCCAGTCCTGATGTCATTCGTAGGCAATGGTTTTGACAGG
AACCACATCAGTCGGAAGGTATTTCAAAAGGGTTTGGGAAGGATCGAACA
GAGATTCCCGGCCCTGAAGAACAGGTCTTCCGTGGTGAATGGCGCCGATT
CCAAGACTGGAGCGCCTCGTCCTCCGTTCGTGTCAACCTCGGGTACCGTC
GTACCCATCAGCAAACAAGTGCTGCAGGAGTACGTGCTTGACTCAGATGT
CAAGGGCCACCGTGGCAGGGTGATGTTCTTGTGCTTCGCGGTCTTTGTGG
TCGACCGTGCCCTGTCCCAAAAACACGAGGAAGGCCTAGATGTACCTCAG
AGGTTCAAACGCCTCTGGAAGGCTATGCCAAGTAGCGCGAAGCCGCTGAA
GGATCTACTTCTGTCCAGCGCCGAATGCCTGACGGCGGTCGATTCGAAAG
GGGAGGAAGAAGCCTTCTTCGACGCCAGCCGCCTTCGTTTTTTTGACCTC
CAAAAAGAAGCGGAGGCGGAATCGGGCGTCGGCGAGGACGGCAAAAAACA
CGCTTGACTCAGATGTCAAGGGCCACCGTGGCAGGGTGATGTTCTTGTGC
TTCGCGGTCTTTGTGGTCGACCGTGCCCTGTCCCAAAAACACGAGGAAGG
CCTAGATGTACCTCAGAGGTTCAAACGCCTCTGGAAGGCTATGCCAAGTA
GCGCGAAGCCGCTGAAGGATCTACTTCTGTCCAGCGCCGAATGCCTGACG
GCGGTCGATTCGAAAGGGGAGGAAGAAGCCTTCTTCGACGCCAGCCGCCT
TCGTTTTTTTGACCTCCAAAAAGAAGCGGAGGCGGAATCGGGCGTCGGCG
AGGACGGCAAAAAACACGGTTTGCCGGGAACTCAGCTTCCCTCGGAGAGT
CGTCGGGTGGTAGCTACGTGCGAACGAGGGAAATTCTATCTCTCACTAAC
AACGTCCGTGTTGAAGAATCTTGGCCTGGTCGTGGATGACGGGACATGGA
CAAATAAATCCGTGGAAGTGACCCTGAGGGTCGAAGCTGAAGATGCTCCT
GAGGAAGAATCGTTTGCCGGGAACTCAGCTTCCCTCGGAGAGTCGTCGGG
TGGTAGCTACGTGCGAACGAGGGAAATTCTATCTCTCACTAACAACGTCC
GTGTTGAAGAATCTTGGCCTGGTCGTGGATGACGGGACATGGACAAATAA
ATCCGTGGAAGTGACCCTGAGGGTCGAAGCTGAAGATGCTCCTGAGGAAG
AATCCATTGCGGCAGACCCTGAGGACAACGAGGACACCGTGGAGCCTCGT
CATGACGGTCAACCGACCAAGCGCTCGCGTTCCTCGGCCGAGTCGTCGGA
GAACGAGCTAAAACCAAGCATTGCGGCAGACCCTGAGGACAACGAGGACA
CCGTGGAGCCTCGTCATGACGGTCAACCGACCAAGCGCTCGCGTTCCTCG
GCCGAGTCGTCGGAGAACGAGCTAAAACCAAGGACGTGCGGACAACCAGG
CTGTACCATCCTCCCGTCATTTGGCGCGCTCGGTGACAAGAAGGTGCAGT
TCTGCTCTGAGCACGCGGTGGATGGGACGGTCAAGCTCATAGGCAAGAAC
AGCACCGCACGCGTAGGCCTGGGCCAGAAACGTTCGCGCGTGACGTCGTC
AAGTGATCTGGTGGACCCTTGCTCTAGCAACACGTCTGGGTCAAGCAAGC
GGGCCCGCCCCCTCCATGGACTGCCTCCTCCGTTGGTCAGCGTGCCAGTC
AAGGTAGAGCCAGCGACCGCATCATGAGACGTGCGGACAACCAGGCTGTA
CCATCCTCCCGTCATTTGGCGCGCTCGGTGACAAGAAGGTGCAGTTCTGC
TCTGAGCACGCGGTGGATGGGACGGTCAAGCTCATAGGCAAGAACAGCAC
CGCACGCGTAGGCCTGGGCCAGAAACGTTCGCGCGTGACGTCGTCAAGTG
ATCTGGTGGACCCTTGCTCTAGCAACACGTCTGGGTCAAGCAAGCGGGCC
CGCCCCCTCCATGGACTGCCTCCTCCGTTGGTCAGCGTGCCAGTCAAGGT
AGAGCCAGCGACCGCATCATGA back to top
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