mRNA_E-siliculosus-1a_F_contig1021.198.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1021.198.1 vs. uniprot
Match: A0A6H5KC47_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC47_9PHAE) HSP 1 Score: 763 bits (1969), Expect = 3.340e-268 Identity = 436/533 (81.80%), Postives = 440/533 (82.55%), Query Frame = 1
Query: 1207 MTDRMEGQSLNVIAALALANETALENRDRFAYFRRWSDEYAGVRTAGVQGLVAAVGISGAVGLLGVAAGLAQGKACSPCINLLRLTCAVTFTTTWAAFILSSLVIVGAVAWSDGCQFLNLAATRGWETAGLDGLSAGVLDGCLRGNAVTEEFNITDALGFFESYPGTAEEVGALNATFAETDVETAIYAISDFVYSLNATAVAVSLLDFYTNAEVNGSLLLEPDCPYN----------------------------------------------------------------------------HEQQHETALDYMSRVFNSSDCSSINGDLLSAWDLAARERAYRDQMQDDLTCIATSSNAECSNXXXXXXXXXXXXXXXXXXTFSLSPCSCTSDGCTGAPDTLLAYFRAFADNVTALRADLAGLLTPPLEAETAAFSGQGALANASSDSWAARCASRCSFVDSHYRNFEGAMCGTALGGLAQVGFSMFMIGVGGLALAVTSGIMVHRLKEVWAKSMTKVLSTEEDIVMEEY 2577
MTDRM+GQSLNVIAALALANETALENRDRFAYFRRWSDEYAGVRTAGVQGLVAAVGISGAVGLLGVAAGLA+GKACSPCINLLRLTCAVTFTTTWA+FILSSLVIVGAV WSDGCQFLNLAATRGWET G+DGLSA VLDGCLRGNAVTEEFNITDALGFFESYPGTAEEVGALNATFAETDVET IYAISDFVYSLNATA AVSLLDFYTNAEVNGSLLLEPDCPYN Q ETALDYMSRVFNSSDCSSINGDLLSAWDLAARERAYRDQMQDDLTC TSSN EC XXXXXXXXXXXXXXXXX FSLSPCSCTSDG TGAPDTLLAYFRAFADNVTALRADLAGLLTPPLEAETAAFSGQGALANASSDSWAARCASRCSFVDSHYRNFEGAMCGTALGGLAQVGFSMFMIGVGGLALAVTSGIMVHRLKEVWAKSMTKVLSTEEDIVMEEY
Sbjct: 1 MTDRMKGQSLNVIAALALANETALENRDRFAYFRRWSDEYAGVRTAGVQGLVAAVGISGAVGLLGVAAGLAKGKACSPCINLLRLTCAVTFTTTWASFILSSLVIVGAVTWSDGCQFLNLAATRGWETVGVDGLSAAVLDGCLRGNAVTEEFNITDALGFFESYPGTAEEVGALNATFAETDVETTIYAISDFVYSLNATAGAVSLLDFYTNAEVNGSLLLEPDCPYNVTFEGEEATAYLGRPWLALPTVSTAAETVTTGATTSDGEDGGGVGNSSSSYDSAGNLTTVDASLTPWQAGGTRQSFGRQGDETALDYMSRVFNSSDCSSINGDLLSAWDLAARERAYRDQMQDDLTCTTTSSNVECXXXXXXXXXXXXXXXXXXX--FSLSPCSCTSDGYTGAPDTLLAYFRAFADNVTALRADLAGLLTPPLEAETAAFSGQGALANASSDSWAARCASRCSFVDSHYRNFEGAMCGTALGGLAQVGFSMFMIGVGGLALAVTSGIMVHRLKEVWAKSMTKVLSTEEDIVMEEY 531
BLAST of mRNA_E-siliculosus-1a_F_contig1021.198.1 vs. uniprot
Match: B8BZV3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZV3_THAPS) HSP 1 Score: 91.7 bits (226), Expect = 3.230e-15 Identity = 174/849 (20.49%), Postives = 311/849 (36.63%), Query Frame = 1
Query: 154 RMLAAANNLQYDCAAHNISDEEAVEAFDNTTTLSLGLGIARILTGNRRAGGQEGTWYEDTLTNLLIEYCEEEERGVHHRYVTSQNATAAKDEYGVCVQTLDSDQDTYAAGLCERVANCYWEEPREYLARGRRYTDVQYEANERAA-----RDYMQSVMLSYGTLGFVLAVAVFAGCAKFAVRRGIYNKCVCDSDLQRDRTGYTDLEQKVPVAVFFCGLVTVVVAALLGLQGNSYISSGLDLMFITMDEAAEGVNDLAHSVSLPLASFVGSLNASAEEVQRLLSNADEWIDQLESGMLLRLDSFDNRFLGRGAEFDVLAERVELASSDFMSEAVDDVYTALEMLQVRMLWYTEDFLDMTDRMEGQSLNVIAALALANETALENRDRFAYFRRWSDEYAGVRTAGVQGL-VAAVGISGAVGLLGVAAGLAQGKACSPCINLLRLTCAVTFTTTWAAFILSSLVIVGAVAWSDGCQFLNLAATRGWETAGLDGLSAGVLDGCLRGNAVTEEFNITDALGFFESYPGTAEEVGALNATFAETDVETAIYAISDFVYSLNATAVAV------------SLLDFYTNAEVNGSLLLE---PDCPYNHEQQH-----------ETALDYMSRVFNSSDCSSINGDLLSAWDLAARERAYRDQMQDDLTCI--ATSSNAECSNXXXXXXXXXXXXXXXXXXTFSLSPCSCTSDGCTGAPDTLLAYFRAFADNVTALRADLAGLLTPPLEAETAAFSG---------------------QGALANASSDSWAAR--------CASRCSFVDSHYRNFEGAMCGTALGGLAQVGFSMFMIGVGGLALAVTSGIMVHRLK 2511
+ A A L+ DC +DE +++ + R L + R + ++Y+D + N+++ C+ + G R V ++ AAKD C+ DS GLCER +NCYW E R R+ +Y A E Y + + L +G +G R Y + +C + ++D D+ +PV ++ LV++V+AA + GN +S G F+ D E + LPL + + +A + + + D + ++ ++ A+++F + EML L D D D +E + L E +LE ++ Y+ VR + V L + ++GI +G LG+ L++ + CS + ++LT V+ A + +S + + D C+ + TR +E D +S V + + N+T+ + F + ++ +N + A V + I + S++ TA++V + D YT + L+ D PY E++ DYM R++N + S D CI SS +CS+ PC G T D LL + D + ADL + LE ++ FS + +L N +S S C SF++ Y + +CG GG+AQ+ ++++++G+ +A+ S I+ R+K
Sbjct: 18 KATAHARRLELDCPVDESADENNDQSYQGRFQSYSRGSLGRKLVESIRKKPE--SYYQDIVDNVVMLLCDVDNAG--ERCVDEGSSLAAKDAEQNCIIASDSQ---CPVGLCERQSNCYWNSVHEGQNRTTRFPPERYNAAETELYGTNNNSYARQIAL-FGIIGXXXXXXXXXXXXXXXXVR--YLRFLCSTIQRKDSYRLYDII--LPVVLYIIALVSIVIAASMAFVGNEDVSVGATNTFLHADGLIEDLLLFLGRSRLPLENIQSIVKRAALDAKGIFDGTD--YVKRDAMQIVNXXXXXXXXXXXXXXXXXXXXXXNQATAEFDEKVTPITDNVQEMLDTLEL----DLYDQADSIEASIFTAMQQLDSFYEQSLEWQNEVYYYEGQELGTRNVRRSAVMILFLVSLGIV-LLGFLGLT--LSRSRICSKVYHTIKLTGFVSSLLGTVALLSASATLCLTFVFHDACEVSGIV-TRDFEPFVGDRISPAV-NAAFNDTNLAVALNLTEKVDFEQKLEDGLIQIEMVNVSQAFQLVLEPLSQIQSALGSISGTALSVLNQATASNEFPCAFNDTYTKDTITHPWDLDRSTDDTPYTIRDNMGNPTSYDRIGLESSDDYMHRIYNKAGVCSEPSDC----------------------CIYEGPSSEFDCSSSVYADCDYGNNCAF---------PCENVQLGITEGYDALLMLY----DKEQRMTADLGVVCPAELECPSSEFSSDFSSSTLVGSVEDYKVKITDTKESLVNLASTSVGGTMIEVEDFLCNMNVSFIERRYAFIKTDICGILFGGIAQINWALWLLGISLEVVAIVSHILAVRMK 808 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1021.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1021.198.1 >prot_E-siliculosus-1a_F_contig1021.198.1 ID=prot_E-siliculosus-1a_F_contig1021.198.1|Name=mRNA_E-siliculosus-1a_F_contig1021.198.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=860bp MLRFGYLGVTTTAMLLVVTSSALAAAVADGVLLYKPEQVSTPDTRRQAQTback to top mRNA from alignment at E-siliculosus-1a_F_contig1021:17086..24047+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1021.198.1 ID=mRNA_E-siliculosus-1a_F_contig1021.198.1|Name=mRNA_E-siliculosus-1a_F_contig1021.198.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6962bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1021:17086..24047+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1021:17086..24047+ >mRNA_E-siliculosus-1a_F_contig1021.198.1 ID=mRNA_E-siliculosus-1a_F_contig1021.198.1|Name=mRNA_E-siliculosus-1a_F_contig1021.198.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5160bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1021:17086..24047+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |