mRNA_E-siliculosus-1a_F_contig1324.1971.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1324.1971.1
Unique NamemRNA_E-siliculosus-1a_F_contig1324.1971.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1324.1971.1 vs. uniprot
Match: D8LSC7_ECTSI (Cytochrome b561 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC7_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.200e-51
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:    1 MGLLLYDLSTVSFVLGLWTFFGWSVVAIVVPLMLAYAWLNVNLQMHETKHITVPVYSEGTDDPAGEKLTAPETKQLEEEGVPESKGEREYPL 276
            MGLLLYDLSTVS VLGLWTFFG SVVA+VVPLMLAYAWLNVNLQMHETKHITVPVYSEGTDDPAGEKLTAPETKQLEEEGVPESKGEREYPL
Sbjct:  190 MGLLLYDLSTVSVVLGLWTFFGLSVVAVVVPLMLAYAWLNVNLQMHETKHITVPVYSEGTDDPAGEKLTAPETKQLEEEGVPESKGEREYPL 281
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1324.1971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSC7_ECTSI1.200e-5196.74Cytochrome b561 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1324contigE-siliculosus-1a_F_contig1324:27147..28057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size279
Model size279
Exons2
Ec32 orthologEc-21_003210.1
Ec32 ortholog descriptionCytochrome b561 domain
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927846.0788727-CDS-E-siliculosus-1a_F_contig1324:27146..272781622927846.0788727-CDS-E-siliculosus-1a_F_contig1324:27146..27278Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1324 27147..27278 +
1696318705.3708615-CDS-E-siliculosus-1a_F_contig1324:27146..272781696318705.3708615-CDS-E-siliculosus-1a_F_contig1324:27146..27278Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1324 27147..27278 +
1622927846.0934646-CDS-E-siliculosus-1a_F_contig1324:27910..280571622927846.0934646-CDS-E-siliculosus-1a_F_contig1324:27910..28057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1324 27911..28057 +
1696318705.380884-CDS-E-siliculosus-1a_F_contig1324:27910..280571696318705.380884-CDS-E-siliculosus-1a_F_contig1324:27910..28057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1324 27911..28057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1324.1971.1prot_E-siliculosus-1a_F_contig1324.1971.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1324 27147..28057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1324.1971.1

>prot_E-siliculosus-1a_F_contig1324.1971.1 ID=prot_E-siliculosus-1a_F_contig1324.1971.1|Name=mRNA_E-siliculosus-1a_F_contig1324.1971.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=93bp
MGLLLYDLSTVSFVLGLWTFFGWSVVAIVVPLMLAYAWLNVNLQMHETKH
ITVPVYSEGTDDPAGEKLTAPETKQLEEEGVPESKGEREYPL*
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mRNA from alignment at E-siliculosus-1a_F_contig1324:27147..28057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1324.1971.1 ID=mRNA_E-siliculosus-1a_F_contig1324.1971.1|Name=mRNA_E-siliculosus-1a_F_contig1324.1971.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=911bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1324:27147..28057+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCCTCCTGCTGTATGACTTGTCGACGGTATCGTTCGTGCTCGGCCT
GTGGACATTCTTCGGTTGGTCGGTGGTAGCGATCGTTGTCCCGCTGATGC
TGGCGTACGCGTGGCTCAACGTCAACCTCCAGGTGAAGGAAGGGTCTTTG
CCTGGTGTTGGTGGGGCGCACAATACGGTGGTGGTGGTGGTGGTAGCTTG
CCCTCAAGCATGTCGCCGTTGCCGTTGTGGCTGCTGCGTTGTGCCGGGGG
TGCAAACCGGTGCTAACACAGCAGTGCTGTTGACTGGCTCCGGTGCCGCA
ACGCGGTGTCGTGTCTGAAGAGTATTTGCCGTACCGCACCAGAACCCGTG
TACCTAGTCGCGCAATATCACACAAGACAGCAGCCTGTTTGAGCGAAAGG
TTACACGAAACGGAAGGATTGATGGAAAGAAGGCGAAAGCAAGCCTTGCA
CGGAGGAGGGCCACTTCGACGCCGGTAAGCGAAACAAGGGCTCTGGGTGC
CGAGATAGCCAGGAGGCCAGGGGCATGCGCAGGCCCCCTACCGGAGCACC
GGTGACGCTGCCGATTCACCAACAGGACCACCCTCCTGATGACGGCAATG
GTCATGATTCCTGCTGCCGCCGCTTCCGCGCCCCCCTCCTGCCGGCAGAA
TAACGCCTCGCCGCTGAACGAAAGCCCCCGCATAACACCACCCAACCATT
AACCAACCGCGCGCTGCACCACCTGCCGGCCTGCCAACGTCTCCTCCCGT
TCGCCGTCCCACAGATGCACGAAACGAAGCACATTACGGTTCCGGTGTAC
AGCGAGGGGACGGACGACCCGGCAGGGGAAAAGTTGACCGCACCAGAGAC
GAAGCAGCTCGAGGAGGAAGGGGTGCCCGAGTCCAAAGGGGAGAGGGAGT
ACCCCTTGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1324:27147..28057+

>mRNA_E-siliculosus-1a_F_contig1324.1971.1 ID=mRNA_E-siliculosus-1a_F_contig1324.1971.1|Name=mRNA_E-siliculosus-1a_F_contig1324.1971.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1324:27147..28057+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCCTCCTGCTGTATGACTTGTCGACGGTATCGTTCGTGCTCGGCCT
GTGGACATTCTTCGGTTGGTCGGTGGTAGCGATCGTTGTCCCGCTGATGC
TGGCGTACGCGTGGCTCAACGTCAACCTCCAGATGGGCCTCCTGCTGTAT
GACTTGTCGACGGTATCGTTCGTGCTCGGCCTGTGGACATTCTTCGGTTG
GTCGGTGGTAGCGATCGTTGTCCCGCTGATGCTGGCGTACGCGTGGCTCA
ACGTCAACCTCCAGATGCACGAAACGAAGCACATTACGGTTCCGGTGTAC
AGCGAGGGGACGGACGACCCGGCAGGGGAAAAGTTGACCGCACCAGAGAC
GAAGCAGCTCGAGGAGGAAGGGGTGCCCGAGTCCAAAGGGGAGAGGGAGT
ACCCCTTGTGAATGCACGAAACGAAGCACATTACGGTTCCGGTGTACAGC
GAGGGGACGGACGACCCGGCAGGGGAAAAGTTGACCGCACCAGAGACGAA
GCAGCTCGAGGAGGAAGGGGTGCCCGAGTCCAAAGGGGAGAGGGAGTACC
CCTTGTGA
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