prot_E-siliculosus-1a_F_contig1020.192.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1020.192.1
Unique Nameprot_E-siliculosus-1a_F_contig1020.192.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length575
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1020.192.1 vs. uniprot
Match: A0A6H5L6F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F2_9PHAE)

HSP 1 Score: 461 bits (1187), Expect = 7.910e-155
Identity = 427/548 (77.92%), Postives = 431/548 (78.65%), Query Frame = 0 
Query:   27 MLQGTPGMGAPSPGPGINGMVVQQAAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPKAGAPVHWPGIEGVQAGAPEGLQNAGNAGGHGAXXXXXXXXXXXXXXXXXXXXXXEGPATATHAVHGAAAVXXXXXXXXXXXXXXXXXVHLPASVQHPAYEAPRQVAPAVTAQPMAMVTPPVVHGVAPKAAPPPALAVSGHPGAGSXXXXXXXXXXXXXXNVSAAXPAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTSGEGGASGEGXXXXXXXXXXXXXXXXXEGSQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIIVSDSGLLVKAAGPAAVAAADPAGTGKDDR 574
            MLQGTPGMGAP PGPGINGMVVQQAAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPK GAPVHWPG EG QAGAPEGLQN GNAGGH  XXXXXXXXXXXXXXXXXXXXX E PAT+THA HGAAAV     XXXXXXXXXXXXVHL                               VHGVAPKAAPPPAL VSGHPGAGSXXXXXXXXXXXXXXNVSAAX A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                              RTSGEGG SGEG   XXXXXXXXXXXXX EG QENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDF+LAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVA+IVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGI+VSDSGLLVKAAGPAAVAAADPAGTGKDDR
Sbjct:    1 MLQGTPGMGAPPPGPGINGMVVQQAAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPKPGAPVHWPGKEGGQAGAPEGLQNTGNAGGHXXXXXXXXXXXXXXXXXXXXXXXGESPATSTHAAHGAAAVAPPVAXXXXXXXXXXXXVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHGVAPKAAPPPALTVSGHPGAGSXXXXXXXXXXXXXXNVSAAXXATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------RTSGEGGVSGEGGAAXXXXXXXXXXXXXSEGPQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFILAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPAAVAAADPAGTGKDDR 486
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BLAST of mRNA_E-siliculosus-1a_F_contig1020.192.1 vs. uniprot
Match: D8LQ87_ECTSI (Contains similarity to extensin (AtExt1) from Arabidopsis thaliana n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ87_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 1.790e-109
Identity = 381/448 (85.04%), Postives = 386/448 (86.16%), Query Frame = 0 
Query:  145 HAVHGAAAVXXXXXXXXXXXXXXXXXVHLPASVQHPAYEAPRQVAPAVTAQPMAMVTPPVVHGVAPKAAPPPALAVSGHPGAGSXXXXXXXXXXXXXXNVSAAXPAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------RTSGEGGASGEGXXXXXXXXXXXXXXXXXEGSQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIIVSDSGLLVKAAGPAAVAAADPAGTGKDDR 574
            HAV+GAAAV          XXXXXXXVHLPASVQHPAY+A RQVAPAVTAQPMAMV PPVVHGVAPKAAPPPALAVS HPGAG XXXXXXXXXXXXXX     XPAM   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXX     XXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  RTSGEGGASGE XXXXXXXXXXXXXXXXXEG Q+NEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVA+IVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGI+VSDSGLLVKAAGPAAVAAADPAGTGKDDR
Sbjct:    2 HAVYGAAAVAPPVAAVTAAXXXXXXXVHLPASVQHPAYDAARQVAPAVTAQPMAMVAPPVVHGVAPKAAPPPALAVSVHPGAGXXXXXXXXXXXXXXXXXXXXXPAMAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVSAVXXXXXXXXXXXXXXXXXXAQAVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPATAAGRTSGEGGASGEXXXXXXXXXXXXXXXXXXEGPQKNEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPAAVAAADPAGTGKDDR 449
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BLAST of mRNA_E-siliculosus-1a_F_contig1020.192.1 vs. uniprot
Match: A0A4D9D766_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D766_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.020e-6
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 0 
Query:  446 QLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGI 544
            +L  F+ A+D+Y  T+P E T + LQ+GG+T ++S+I  L+SLAA+ LV+ IVH+++ +  ++ Q               +G +L  EDL  SL   G+
Sbjct:   87 ELAPFLNALDQYHPTIPEEVTAYFLQQGGVTVTDSKIKKLVSLAAEKLVSEIVHDTTTYSRMKDQ---------------DGDILKMEDLRESLGKYGV 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1020.192.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6F2_9PHAE7.910e-15577.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ87_ECTSI1.790e-10985.04Contains similarity to extensin (AtExt1) from Arab... [more]
A0A4D9D766_9STRA6.020e-635.35Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21242:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 415..546
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPANTHERPTHR21242TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 415..546

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1020contigE-siliculosus-1a_F_contig1020:2221..5473 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1020.192.1mRNA_E-siliculosus-1a_F_contig1020.192.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1020 2080..6429 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1020.192.1 ID=prot_E-siliculosus-1a_F_contig1020.192.1|Name=mRNA_E-siliculosus-1a_F_contig1020.192.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=575bp
MEQQLTAGGLPTSAQQQQQQQRQQQAMLQGTPGMGAPSPGPGINGMVVQQ
AAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPKAGAPVHWPGIEGVQAGA
PEGLQNAGNAGGHGAGGTGVVAAAAAAAAAAAAAGTGEGPATATHAVHGA
AAVAPPVAAVTAAPAPAPAPVHLPASVQHPAYEAPRQVAPAVTAQPMAMV
TPPVVHGVAPKAAPPPALAVSGHPGAGSAPPPSAMAVTGHPGNVSAAPPA
MAVAGHPGNVSAPPPAQAVAGHPGNVSAAPPAMAVAGHHVSAAPPAQAVA
GHPGTVSAAPPAMAVAGHHVSAAPPAQAVAGHPGNVSAPPPAQAVAGHPG
NVSAAPPAQAVAGHPGSGSAPPPAAVPATAPGRTSGEGGASGEGGAAEGE
GGDAGGGGGEVEGSQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDF
MLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHE
SSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIIVSDSG
LLVKAAGPAAVAAADPAGTGKDDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003923TFIID_30kDa