Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1020.192.1 vs. uniprot
Match:
A0A6H5L6F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F2_9PHAE)
HSP 1 Score: 461 bits (1187), Expect = 7.910e-155
Identity = 427/548 (77.92%), Postives = 431/548 (78.65%), Query Frame = 0
Query: 27 MLQGTPGMGAPSPGPGINGMVVQQAAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPKAGAPVHWPGIEGVQAGAPEGLQNAGNAGGHGAXXXXXXXXXXXXXXXXXXXXXXEGPATATHAVHGAAAVXXXXXXXXXXXXXXXXXVHLPASVQHPAYEAPRQVAPAVTAQPMAMVTPPVVHGVAPKAAPPPALAVSGHPGAGSXXXXXXXXXXXXXXNVSAAXPAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTSGEGGASGEGXXXXXXXXXXXXXXXXXEGSQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIIVSDSGLLVKAAGPAAVAAADPAGTGKDDR 574
MLQGTPGMGAP PGPGINGMVVQQAAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPK GAPVHWPG EG QAGAPEGLQN GNAGGH XXXXXXXXXXXXXXXXXXXXX E PAT+THA HGAAAV XXXXXXXXXXXXVHL VHGVAPKAAPPPAL VSGHPGAGSXXXXXXXXXXXXXXNVSAAX A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RTSGEGG SGEG XXXXXXXXXXXXX EG QENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDF+LAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVA+IVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGI+VSDSGLLVKAAGPAAVAAADPAGTGKDDR
Sbjct: 1 MLQGTPGMGAPPPGPGINGMVVQQAAAAAYSAGQHPGLESVSAPRNTTSPIPPPIPKPGAPVHWPGKEGGQAGAPEGLQNTGNAGGHXXXXXXXXXXXXXXXXXXXXXXXGESPATSTHAAHGAAAVAPPVAXXXXXXXXXXXXVHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHGVAPKAAPPPALTVSGHPGAGSXXXXXXXXXXXXXXNVSAAXXATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------RTSGEGGVSGEGGAAXXXXXXXXXXXXXSEGPQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFILAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPAAVAAADPAGTGKDDR 486
BLAST of mRNA_E-siliculosus-1a_F_contig1020.192.1 vs. uniprot
Match:
D8LQ87_ECTSI (Contains similarity to extensin (AtExt1) from Arabidopsis thaliana n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ87_ECTSI)
HSP 1 Score: 344 bits (882), Expect = 1.790e-109
Identity = 381/448 (85.04%), Postives = 386/448 (86.16%), Query Frame = 0
Query: 145 HAVHGAAAVXXXXXXXXXXXXXXXXXVHLPASVQHPAYEAPRQVAPAVTAQPMAMVTPPVVHGVAPKAAPPPALAVSGHPGAGSXXXXXXXXXXXXXXNVSAAXPAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------RTSGEGGASGEGXXXXXXXXXXXXXXXXXEGSQENEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIIVSDSGLLVKAAGPAAVAAADPAGTGKDDR 574
HAV+GAAAV XXXXXXXVHLPASVQHPAY+A RQVAPAVTAQPMAMV PPVVHGVAPKAAPPPALAVS HPGAG XXXXXXXXXXXXXX XPAM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX XXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RTSGEGGASGE XXXXXXXXXXXXXXXXXEG Q+NEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVA+IVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGI+VSDSGLLVKAAGPAAVAAADPAGTGKDDR
Sbjct: 2 HAVYGAAAVAPPVAAVTAAXXXXXXXVHLPASVQHPAYDAARQVAPAVTAQPMAMVAPPVVHGVAPKAAPPPALAVSVHPGAGXXXXXXXXXXXXXXXXXXXXXPAMAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVSAVXXXXXXXXXXXXXXXXXXAQAVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPATAAGRTSGEGGASGEXXXXXXXXXXXXXXXXXXEGPQKNEAAAAPRLAGKRPRGSMAASANKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPAAVAAADPAGTGKDDR 449
BLAST of mRNA_E-siliculosus-1a_F_contig1020.192.1 vs. uniprot
Match:
A0A4D9D766_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D766_9STRA)
HSP 1 Score: 60.8 bits (146), Expect = 6.020e-6
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 0
Query: 446 QLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVANIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGI 544
+L F+ A+D+Y T+P E T + LQ+GG+T ++S+I L+SLAA+ LV+ IVH+++ + ++ Q +G +L EDL SL G+
Sbjct: 87 ELAPFLNALDQYHPTIPEEVTAYFLQQGGVTVTDSKIKKLVSLAAEKLVSEIVHDTTTYSRMKDQ---------------DGDILKMEDLRESLGKYGV 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1020.192.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 3
M E Q Q L T A G G L P T S A Q Q Q Q Q Q Q R Q Q Q A M L Q G T P G M G A P S P G P G I N G M V V Q Q A A A A A Y S A G Q H P G L E S V S A P R N T T S P I P P P I P K A G A P V H W P G I E G V Q A G A P E G L Q N A G N A G G H G A G G T G V V A A A A A A A A A A A A A G T G E G P A T A T H A V H G A A A V A P P V A A V T A A P A P A P A P V H L P A S V Q H P A Y E A P R Q V A P A V T A Q P M A M V T P P V V H G V A P K A A P P P A L A V S G H P G A G S A P P P S A M A V T G H P G N V S A A P P A M A V A G H P G N V S A P P P A Q A V A G H P G N V S A A P P A M A V A G H H V S A A P P A Q A V A G H P G T V S A A P P A M A V A G H H V S A A P P A Q A V A G H P G N V S A P P P A Q A V A G H P G N V S A A P P A Q A V A G H P G S G S A P P P A A V P A T A P G R T S G E G G A S G E G G A A E G E G G D A G G G G G E V E G S Q E N E A A A A P R L A G K R P R G S M A A S A N K R A K E M Q L R D F M L A V D E Y G S T V P G E A T R F H L Q R G G L T T S N S Q I V T L M S L A A D H L V A N I V H E S S I F R N V R L Q Q A R E Q G R E A A E L L G E E G Q M L T N E D L S L S L L S R G I I V S D S G L L V K A A G P A A V A A A D P A G T G K D D R * 50 100 150 200 250 300 350 400 450 500 550 Expect = 7.91e-155 / Id = 77.92 Expect = 1.79e-109 / Id = 85.04 Expect = 6.02e-6 / Id = 35.35 Sequence A0A6H5L6F2_9PHAE D8LQ87_ECTSI A0A4D9D766_9STRA back to top
InterPro
Analysis Name:
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
M E Q Q L T A G G L P T S A Q Q Q Q Q Q Q R Q Q Q A M L Q G T P G M G A P S P G P G I N G M V V Q Q A A A A A Y S A G Q H P G L E S V S A P R N T T S P I P P P I P K A G A P V H W P G I E G V Q A G A P E G L Q N A G N A G G H G A G G T G V V A A A A A A A A A A A A A G T G E G P A T A T H A V H G A A A V A P P V A A V T A A P A P A P A P V H L P A S V Q H P A Y E A P R Q V A P A V T A Q P M A M V T P P V V H G V A P K A A P P P A L A V S G H P G A G S A P P P S A M A V T G H P G N V S A A P P A M A V A G H P G N V S A P P P A Q A V A G H P G N V S A A P P A M A V A G H H V S A A P P A Q A V A G H P G T V S A A P P A M A V A G H H V S A A P P A Q A V A G H P G N V S A P P P A Q A V A G H P G N V S A A P P A Q A V A G H P G S G S A P P P A A V P A T A P G R T S G E G G A S G E G G A A E G E G G D A G G G G G E V E G S Q E N E A A A A P R L A G K R P R G S M A A S A N K R A K E M Q L R D F M L A V D E Y G S T V P G E A T R F H L Q R G G L T T S N S Q I V T L M S L A A D H L V A N I V H E S S I F R N V R L Q Q A R E Q G R E A A E L L G E E G Q M L T N E D L S L S L L S R G I I V S D S G L L V K A A G P A A V A A A D P A G T G K D D R * 50 100 150 200 250 300 350 400 450 500 550 Score = Score = Sequence PTHR21242:SF0 PTHR21242
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PANTHER PTHR21242:SF0 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10 coord: 415..546 IPR003923 Transcription initiation factor TFIID, 23-30kDa subunit PANTHER PTHR21242 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10 coord: 415..546
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_E-siliculosus-1a_F_contig1020.192.1 ID=prot_E-siliculosus-1a_F_contig1020.192.1|Name=mRNA_E-siliculosus-1a_F_contig1020.192.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=575bp back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR003923 TFIID_30kDa