mRNA_E-siliculosus-1a_F_contig1311.1902.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: D8LD53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD53_ECTSI) HSP 1 Score: 475 bits (1222), Expect = 2.040e-161 Identity = 281/287 (97.91%), Postives = 284/287 (98.95%), Query Frame = 1
Query: 1042 GNGGPSDEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQENQYTVDALFPPPEPARXXXXXXXXXXXXXXXXX-GMNRRDGGDSDYEGGGRSSSMYDYGEYHYEFSPGMRHGASSRAGGXXXXXXADREGWYHRDDYY 1899
GNGGPSDEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQENQYTVDALFPPPEPARXXXXXXXXXXXXXXXXX GMNRRDGGDSDYEGGGR SSMYDYGEY+YEFSPGMRHGASSRAGGXXXXXXA+REGWYH D+YY
Sbjct: 57 GNGGPSDEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQENQYTVDALFPPPEPARXXXXXXXXXXXXXXXXXXGMNRRDGGDSDYEGGGRPSSMYDYGEYNYEFSPGMRHGASSRAGGXXXXXXAEREGWYHGDEYY 343
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: A0A6H5K0G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G2_9PHAE) HSP 1 Score: 396 bits (1018), Expect = 7.910e-129 Identity = 358/522 (68.58%), Postives = 359/522 (68.77%), Query Frame = 1
Query: 82 MAPSKKKPKTSSKAADSITAVEASTPXXXXXXXXXXRAAPKPGQQAQLSADHTKAAAVSSRPKRNAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAASVSIGVGRQRRSTAGMSWRHALDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGGPSDEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQENQYTVDALFPPPE 1647
MAPSKKKPKT SKAADS TA XXXX R APKPGQQAQLSADH KAA VS RPKRNAE XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX AAP ASVSIGVGRQRRSTAGMSWRHALDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GNGGPSDEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYD ARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQENQYTV+ALFPPPE
Sbjct: 1 MAPSKKKPKTPSKAADSSTAXXXXXXXXXXSQATSSRVAPKPGQQAQLSADHAKAATVSLRPKRNAEKKKYDDSEDDRPQHLSAKRSKKKKAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIEEXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXP---------------------------------------------------------------------------AAPTASVSIGVGRQRRSTAGMSWRHALDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GNGGPSDEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDVARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQENQYTVEALFPPPE 444
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: A0A7S2MP46_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MP46_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.840e-30 Identity = 77/191 (40.31%), Postives = 102/191 (53.40%), Query Frame = 1
Query: 1069 VVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQES-STATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQA-----QWVRCQN--CGKWRALLRCMDASLFLGHGQ--QFYCLMNTWNESLASCSAPQEN 1611
+WV+CD C+KWRRL VD +LP KW+C MN D RA C A +E TA E+ A D R+ L W RR++C E +S+L P+M TRGKR+ + +WV+C N CGKWRALLR MDAS + + ++YC++NTW+E ASC+APQEN
Sbjct: 54 AIWVECDKCQKWRRLRGVVDTKKLPSKWYCSMNKNDPERAKCSAPEEEYETANTPES--------------------------------AMDQRTRKHLRLWVRRLQCNETYESRL-PTM-TRGKRRNTASGSKEPYEWVKCCNPSCGKWRALLRFMDASSVIESAKNGEWYCVLNTWDEKAASCAAPQEN 210
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: A0A7S2B7X4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7X4_9STRA) HSP 1 Score: 127 bits (319), Expect = 2.170e-30 Identity = 71/190 (37.37%), Postives = 94/190 (49.47%), Query Frame = 1
Query: 1078 VQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRC--QNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQENQYTVDALFPP 1641
VQCD C KWRRL D D+LP KW+C MN D AR NC A +E T + D L+ L W RR++C + A+ +L S STRGK++ + ++++C NCGKWRAL R +D+ +YC+MNTW+E+LASCSAPQE D P
Sbjct: 1 VQCDKCTKWRRLHGVADADKLPKKWYCTMN-NDPARNNCNAPEEEET------------------------------------EKDPDERLKAHLRLWVRRLQCQDTAEVRLPTSSSTRGKKRPLHEQEYIQCCDPNCGKWRALHRSLDSKTLAERAGAWYCVMNTWDEALASCSAPQELPIGYDRATSP 153
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: A0A7S3GQ09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQ09_9STRA) HSP 1 Score: 125 bits (315), Expect = 8.550e-29 Identity = 72/197 (36.55%), Postives = 102/197 (51.78%), Query Frame = 1
Query: 1042 GNGGPSDEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQN--CGKWRA---------LLRCMDASLFLGHGQQFYCLMNTWNESLASCSA 1599
G G + VWVQC+TC KWR LP VDPD+LP W C++NIYD R NC A +ES L E + Q L+ F+ WA+R+KCA++A+++L+ + TRGK K A+W++C + CGKWRA LL+ ++ F G +YC MN+W+E+ SC+A
Sbjct: 104 GKSGDAPPERVWVQCNTCDKWRSLPSTVDPDKLPDIWTCDLNIYDNTRNNCNAPEESYK---LPQEEQHEQ-------------------------------LKAFVKVWAKRLKCADRAETRLSNAALTRGK-KRKVDAEWIKCSSPACGKWRAIPRTIETATLLKRLNKGRFFGGDGVWYCSMNSWDETTGSCAA 265
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: A0A7S3DU87_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DU87_9STRA) HSP 1 Score: 129 bits (325), Expect = 4.990e-28 Identity = 81/207 (39.13%), Postives = 106/207 (51.21%), Query Frame = 1
Query: 1072 VWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQES-STATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQA----QWVRCQN--CGKWRALLRCMDASLFL---------GHGQQFYCLMNTWNESLASCSAPQENQYTVDALFPPP 1644
WV+CD CKKWRRL VD +LP KW+C MN D RA C A +E T E+ A DA R+ L W RR++C E +S+ P++ TRGK++A +WVRC N CGKWRA+LRCM+A + Q++YC+MNTW+E +ASC+APQEN + AL PP
Sbjct: 388 TWVECDKCKKWRRLRGVVDEKKLPPKWYCSMNRNDPERARCSAPEEDYETQQTPES--------------------------------AADAKTRKHLRVWVRRLQCQEAYESRQ-PTL-TRGKKRAAGTMKDPYEWVRCCNPSCGKWRAVLRCMEAKTAVLDRKNPHSCAREQEWYCVMNTWDEKMASCAAPQEN---LPALGCPP 557
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: A0A7S2SHF1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHF1_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.320e-27 Identity = 67/185 (36.22%), Postives = 91/185 (49.19%), Query Frame = 1
Query: 1060 DEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRC--QNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQE 1608
D+ WVQCD C +WRRL D LP +W C MN+ D +C +E T + LR L W RRIK E A+++L S +TRGK++ S+ +W++C NCGKWRAL R MD + L +YC+MN+W+E+LASC+APQE
Sbjct: 84 DKSQDWVQCDKCAQWRRLSKLTDLKTLPKRWFCSMNL-DPKYNSCSVPEEEDTED-------------------------------------PEQRLRTHLRLWVRRIKAGEDAETRLPTSHATRGKKRPLSEQEWIQCCDPNCGKWRALHRSMDVNSLLEKHTAWYCVMNSWDEALASCAAPQE 230
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: A0A448ZKH0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKH0_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.420e-27 Identity = 78/190 (41.05%), Postives = 106/190 (55.79%), Query Frame = 1
Query: 1072 VWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQA-----QWVRCQN--CGKWRALLRCMDAS---LFLGHGQQFYCLMNTWNESLASCSAPQEN 1611
WV+CD CKKWRRL VD ++LP KW+C MN D RA C A +E E+ R ES+A DA R+ L W RR++C E+ +S+L P++ TRGK+++ + +W+RC N CGKWRA+LR MDA + L ++YC+MNTW+E ASC+APQEN
Sbjct: 705 TWVECDKCKKWRRLRGIVDSNKLPPKWYCTMNKNDPERARCSAPEEE-----YESPRT-------------------------PESKA-DARTRKHLRVWVRRLQCNEQYESRL-PTL-TRGKKRSAGTSPKEPHEWIRCCNPSCGKWRAILRIMDAKQNVMDLTTDGEWYCVMNTWDEKTASCAAPQEN 861
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: A0A7S4MKU7_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MKU7_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.580e-27 Identity = 77/191 (40.31%), Postives = 102/191 (53.40%), Query Frame = 1
Query: 1069 VVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQES-STATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQA-----QWVRCQN--CGKWRALLRCMDASLFLGHGQ--QFYCLMNTWNESLASCSAPQEN 1611
WV+CD CKKWRRL VD +LP KW+C MN D RA C A +E T T E+ A D R+ L W RR++C E +S+L P+M TRGKR++ + + +WVRC N CGKWRALLR MDA + + ++YC++NTW+E ASC+APQE+
Sbjct: 368 ATWVECDKCKKWRRLRGVVDAKKLPSKWYCHMNKNDPDRAKCSAPEEEYETPTTPES--------------------------------ASDQRTRKHLRLWVRRLQCNEAYESRL-PTM-TRGKRRSATTSAKEPYEWVRCCNPSCGKWRALLRFMDAQTVVESCKNGEWYCVLNTWDEKAASCAAPQES 524
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Match: A0A7S1YBM6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YBM6_9STRA) HSP 1 Score: 126 bits (316), Expect = 2.060e-27 Identity = 78/197 (39.59%), Postives = 102/197 (51.78%), Query Frame = 1
Query: 1072 VWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQES-STATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQA-----QWVRCQN--CGKWRALLRCMDAS---LFLGHGQQFYCLMNTWNESLASCSAPQENQYTVDA 1629
WV+CD CKKWRRL VD +LP KW+C MN D RA C A +E T E+ A DA R+ L W RR++ E + + P+M TRGK+++ + +WVRC N CGKWRALLR MDA L ++YC+MNTW+E +ASC+APQEN +V+A
Sbjct: 280 TWVECDKCKKWRRLRGVVDEKKLPSKWYCSMNKNDPERARCSAPEEEYETPNTPES--------------------------------AADARTRKHLRVWVRRLESQETFEGRQ-PTM-TRGKKRSTATTSKDPYEWVRCCNPSCGKWRALLRFMDAKQHVLERARNGEWYCVMNTWDEKMASCAAPQENLPSVNA 442 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1311.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1311.1902.1 >prot_E-siliculosus-1a_F_contig1311.1902.1 ID=prot_E-siliculosus-1a_F_contig1311.1902.1|Name=mRNA_E-siliculosus-1a_F_contig1311.1902.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=607bp MAPSKKKPKTSSKAADSITAVEASTPASSSSQASSSRAAPKPGQQAQLSAback to top mRNA from alignment at E-siliculosus-1a_F_contig1311:23294..30652- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1311.1902.1 ID=mRNA_E-siliculosus-1a_F_contig1311.1902.1|Name=mRNA_E-siliculosus-1a_F_contig1311.1902.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7359bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1311:23294..30652- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1311:23294..30652- >mRNA_E-siliculosus-1a_F_contig1311.1902.1 ID=mRNA_E-siliculosus-1a_F_contig1311.1902.1|Name=mRNA_E-siliculosus-1a_F_contig1311.1902.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1311:23294..30652- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |