mRNA_E-siliculosus-1a_F_contig102.189.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig102.189.1
Unique NamemRNA_E-siliculosus-1a_F_contig102.189.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: A0A6H5JWD8_9PHAE (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD8_9PHAE)

HSP 1 Score: 487 bits (1253), Expect = 1.030e-168
Identity = 249/266 (93.61%), Postives = 255/266 (95.86%), Query Frame = 2 
Query:  143 MALRNSIASRMRGAATALCRSAITAERQVAPMRLLRSTTARGEGVQPADTSAEDVTKKFGDPSFWEREYTGPQGQKAFEWFLSYDGGLKEYILPVLESLVIMPS-HSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLNLDFPAGRFDAVVDKGTLDALLCRSAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTECGSSSGRGPWSRSIFKELGESEESAAYYMYVLVK 937
            MALRNSIASRMRGAATALCRSA  AERQVAP+RLLRSTTARGEG QPADTSAED+TKKFGDPSFWER+YTGPQG KAFEWFLSYD GLKEY+LPVLESLV+MPS HSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLM+KRH ALGNYDCREGDVLNLDFPA RFDAVVDKGTLDALLCRSAEDALAMVSEVHRVLRKGGVYVQISAEDPE RLELLTECGSSS RGPWSRSIFKELGESE SAAYYMYVLVK
Sbjct:    1 MALRNSIASRMRGAATALCRSATAAERQVAPIRLLRSTTARGEGAQPADTSAEDMTKKFGDPSFWERKYTGPQGHKAFEWFLSYDRGLKEYLLPVLESLVMMPSSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMQKRHAALGNYDCREGDVLNLDFPADRFDAVVDKGTLDALLCRSAEDALAMVSEVHRVLRKGGVYVQISAEDPEMRLELLTECGSSSCRGPWSRSIFKELGESEGSAAYYMYVLVK 266
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: D7FZ50_ECTSI (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ50_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 3.660e-96
Identity = 148/155 (95.48%), Postives = 151/155 (97.42%), Query Frame = 2 
Query:  473 RLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLNLDFPAGRFDAVVDKGTLDALLCRSAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTECGSSSGRGPWSRSIFKELGESEESAAYYMYVLVK 937
            RLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLM+KRH  LGNY+CREGDVLNLDFPAGRFDAVVDKGTLDALLCRSAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTECGSSSGRGPWSRSIFKELGES+ S AYYMYVLVK
Sbjct:   12 RLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMRKRHATLGNYECREGDVLNLDFPAGRFDAVVDKGTLDALLCRSAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTECGSSSGRGPWSRSIFKELGESKGSTAYYMYVLVK 166
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: A0A833R8U1_9POAL (Methyltransferase-like protein 13 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R8U1_9POAL)

HSP 1 Score: 102 bits (253), Expect = 2.070e-21
Identity = 67/202 (33.17%), Postives = 104/202 (51.49%), Query Frame = 2 
Query:  317 FGDPSFWEREYTGPQGQKAFEWFLSYDGGLKEYILPVLESLVIMPSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLNLD-FPAGRFDAVVDKGTLDALLCR--SAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTECGSSSGRGPWSRSIFKELGESEESAA 913
            +G+  +W+  Y   + Q  F+W+  Y     E + P+L  L+      R SHR+L VGCG S  G K+  +       V +ID S   +R M+ ++  L +    + DV ++  F    FDAV+DKGTLD+++C   S  +A  M+ EVHRVL++ G+Y+ I+  DP  RL LL +         W+ +I    G+   S A
Sbjct:    7 YGEEWYWDDRYR--KEQTTFDWYQRY-----EAVAPLLRLLL------RPSHRILLVGCGNSPFGEKMVND---DYEQVVNIDISSVVIRAMQSKYSHLPHLQYMKMDVRDMSAFEDNSFDAVIDKGTLDSIMCGNDSQVNATKMLKEVHRVLKERGIYIMITYGDPSYRLGLLMDLNL------WNINIHMRRGDGASSVA 186
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: A0A2P6QZF7_ROSCH (Putative endothelin-converting enzyme 1 n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QZF7_ROSCH)

HSP 1 Score: 103 bits (256), Expect = 7.250e-21
Identity = 64/179 (35.75%), Postives = 96/179 (53.63%), Query Frame = 2 
Query:  317 FGDPSFWEREYTGPQGQKAFEWFLSYDGGLKEYILPVLESLVIMPSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLNLD-FPAGRFDAVVDKGTLDALLC--RSAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTECGS 844
            +G+P +W+  Y    G  AF+W+  Y       + P++   V  P H+   HR+L VGCG S     +A++       V  ID S   ++ M+++H    +    E DV +++ F    FDAV+DKGTLD+LLC   S ++A  M+SEV RVL+  GVY+ ++   P  RL LL E  S
Sbjct:   49 YGEPWYWDNRYANESG--AFDWYQKYQS-----LAPIINLYV--PRHNHLRHRILVVGCGNSAFSEGMADD---GYEEVLSIDISSVVIQAMQEKHSNRQDLKYLEMDVRDMNAFQTASFDAVIDKGTLDSLLCGSNSQQNAARMLSEVWRVLKDKGVYILVTYGAPLYRLRLLKESSS 215
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: A0A8B9AQ00_PHODC (EEF1A lysine methyltransferase 4 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9AQ00_PHODC)

HSP 1 Score: 100 bits (249), Expect = 2.690e-20
Identity = 63/176 (35.80%), Postives = 97/176 (55.11%), Query Frame = 2 
Query:  317 FGDPSFWEREYTGPQGQKAFEWFLSYDGGLKEYILPVLESLVIMPSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLNLD-FPAGRFDAVVDKGTLDALLC--RSAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTE 835
            +GDP++W++ Y    G   F+W+  Y     + + P+L+  +      R SHRLL VGCG SE+G  +  +       V +ID S   V  M+K++         + DV +++ F  G FDA++DKGTLD+L+C   +  +A  M+ EV RVL+  GVY+ I+  DP  RL LL +
Sbjct:   14 YGDPAYWDQRYRQDPG--PFDWYQKY-----KTLAPLLDLYL------RRSHRLLLVGCGNSELGEHMIAD---GYQDVVNIDISSVVVEAMQKKYQDKPQLKYIKMDVRDMNSFEDGSFDAIIDKGTLDSLMCGQNAQHNATKMLEEVGRVLKDKGVYILITYGDPSYRLHLLRD 173
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: A0A0G4ED17_VITBC (Methyltransf_11 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ED17_VITBC)

HSP 1 Score: 103 bits (256), Expect = 3.120e-20
Identity = 67/197 (34.01%), Postives = 103/197 (52.28%), Query Frame = 2 
Query:  272 GVQPADTSAEDVTKKFGDPSFWEREY---TGPQGQKA--FEWFLSYDGGLKEYILPVLESLVIMPSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLNLDFPAGRFDAVVDKGTLDALLCRSAEDAL------AMVSEVHRVLRKGGVYVQISAEDPEARLELL 829
            G+ P   ++  V +  G+ ++W+R Y   +   G+++   EW  S++          L+ L++    S +  R+LHVGCG S++G  LA E       VT++D SP A+ + K+RHP L   +   GD L    P+  FD V+DKGTLDA++CR              V E+HR+L+ GG YV +S   P  RL +L
Sbjct:   52 GLDPLLNASLAVEEALGEGNYWDRRYQSLSSASGEESGNHEWLRSWED---------LQGLLVRYMSSED--RILHVGCGQSDMGVCLAGE---GFRRVTNMDISPAAIEMQKERHPTL---EWVVGDGLRTGLPSDHFDVVIDKGTLDAIMCRGEGSVTWGWQGSQYVEEMHRILKPGGRYVAVSHGRPSRRLPVL 231
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: A0A2I0V7F9_9ASPA (Methyltransf_11 domain-containing protein n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7F9_9ASPA)

HSP 1 Score: 100 bits (250), Expect = 3.870e-20
Identity = 62/180 (34.44%), Postives = 96/180 (53.33%), Query Frame = 2 
Query:  305 VTKKFGDPSFWEREYTGPQGQKAFEWFLSYDGGLKEYILPVLESLVIMPSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLNLD-FPAGRFDAVVDKGTLDALLC--RSAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTE 835
             T  +G+PS+W++ Y+   G   F+W+  Y     + + P+ +  +      R SH LL VGCG S +G +L  +     L V +ID S   V  M+K+H         + DV ++  F +  FDAV+DKGTLD+L+C   +  +   M+ EV R+L+  GVY+ I+  +P  RL LL E
Sbjct:   36 ATHAYGEPSYWDQRYSEDPG--PFDWYQKY-----KTLAPLFDVYI------RRSHHLLVVGCGNSTLGEELVSD---GYLDVVNIDISSVVVEAMQKKHEDKPELKYIKMDVRDMSAFESSSFDAVIDKGTLDSLMCGQNAHHNTSKMLEEVGRILKDNGVYILITYGEPSYRLHLLKE 199
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: A0A1Y1HM77_KLENI (S-adenosyl-L-methionine dependent methyltransferases n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HM77_KLENI)

HSP 1 Score: 99.8 bits (247), Expect = 5.910e-20
Identity = 68/194 (35.05%), Postives = 102/194 (52.58%), Query Frame = 2 
Query:  317 FGDPSFWEREYTGPQGQKAFEWFLSYDGG---LKEYILPVLESLVIMPSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGN--YDCREGDVLNLDFPAGRFDAVVDKGTLDALLC--RSAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTECGSSSGRGPWSRSI 877
            +GD ++WE  Y        FEW+  YDG    LK+YI    + L++              GCG S +   +A++       +T++D SPT ++ MK +H  L    + C +   + + F +G  DAV+DKGTLDAL+C   + E+  +MVSEV R+LR GGVY+ +S  +P  R+  L   G S  R  WS S+
Sbjct:   24 YGDAAYWEHRYQ--HDVVPFEWYQKYDGLRDLLKKYIHATADILML--------------GCGNSALSEDMAKD---GYYDITNVDISPTVIKAMKMKHLDLPQLKWVCADARSMTI-FKSGSLDAVIDKGTLDALMCGDEATENVNSMVSEVFRLLRPGGVYLMVSYGEPTTRMPYL---GPS--RRAWSTSL 192
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: A0A2R6PVN7_ACTCC (Methyltransferase-like protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6PVN7_ACTCC)

HSP 1 Score: 99.8 bits (247), Expect = 6.160e-20
Identity = 79/238 (33.19%), Postives = 115/238 (48.32%), Query Frame = 2 
Query:  305 VTKKFGDPSFWEREYTGPQGQKAFEWFLSYDGGLKEYILPVLESLVIMPSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLNLD-FPAGRFDAVVDKGTLDALLCRSAE--DALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTECGS---------------SSGRGPW---SRSIFKELGESEESA------AYYMYVLVK 937
             T+ +GDPS+W+  Y    G   F+W+  Y       + P+L   + +P+H    HR+L VGCG S     + ++     + V +ID S  A+  M+K+   L      + DV ++  F  G F+AVVDKGTLD+LLC S    +A  M+ EV RVL+  GVY+ I+   P  RL LL +  S               SSG   W   S     + G S E+A       +Y+YV +K
Sbjct:    6 TTQAYGDPSYWDNRYAQEPG--TFDWYQKYPA-----LAPLLH--LYIPTH----HRILVVGCGNSAFSEGMVDD---GYVDVVNIDISSVAIEAMRKKCSNLPQLKYIKMDVRDMSAFQTGSFEAVVDKGTLDSLLCGSNSRLNATKMLEEVGRVLKDKGVYILITYGAPIYRLRLLRDALSCTIKLHVIEKLLSEESSGHKKWDLTSAIPLDDNGNSVEAALGKNPDVHYIYVCIK 227
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BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Match: A0A5J9T116_9POAL (Methyltransf_11 domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9T116_9POAL)

HSP 1 Score: 99.4 bits (246), Expect = 6.800e-20
Identity = 76/238 (31.93%), Postives = 114/238 (47.90%), Query Frame = 2 
Query:  305 VTKKFGDPSFWEREYTGPQGQKAFEWFLSYDGGLKEYILPVLESLVIMPSHSRESHRLLHVGCGTSEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLNL-DFPAGRFDAVVDKGTLDALLC--RSAEDALAMVSEVHRVLRKGGVYVQISAEDPEARLELLTECG-------------SSSGRGPW-----------SRSIFKELGESEESAAYYMYVLVK 937
             ++ +G+  +W+  Y    G   F+W+  Y       + P+L   V   +H R    LL VGCG S  G  + ++     L V +ID S   +  MKK++         + DV N+ DF +G FDAV+DKGTLD+L+C   S E+A  M+ EV+R+L + GVY+ I+  DP  RL +L +                SS +  W           S SI + LG   +   +Y+YV VK
Sbjct:    8 TSQAYGEAWYWDERYRKEAG--PFDWYQKYPA-----LAPLLRLYVA--THQR----LLLVGCGNSVFGENMVDD---GYLDVVNIDISSVVIDQMKKKYQDKPQLKYMKMDVKNMSDFQSGSFDAVIDKGTLDSLMCGQNSQENATKMLEEVNRILTENGVYILITYGDPSYRLHILKDMQYWTVKLHVIDRWEKSSNQNKWELTKPLPLNDDSTSIIELLGPKPD--VHYIYVCVK 227
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig102.189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWD8_9PHAE1.030e-16893.61Methyltransf_25 domain-containing protein n=1 Tax=... [more]
D7FZ50_ECTSI3.660e-9695.48Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A833R8U1_9POAL2.070e-2133.17Methyltransferase-like protein 13 n=1 Tax=Carex li... [more]
A0A2P6QZF7_ROSCH7.250e-2135.75Putative endothelin-converting enzyme 1 n=2 Tax=Ro... [more]
A0A8B9AQ00_PHODC2.690e-2035.80EEF1A lysine methyltransferase 4 n=1 Tax=Phoenix d... [more]
A0A0G4ED17_VITBC3.120e-2034.01Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A2I0V7F9_9ASPA3.870e-2034.44Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A1Y1HM77_KLENI5.910e-2035.05S-adenosyl-L-methionine dependent methyltransferas... [more]
A0A2R6PVN7_ACTCC6.160e-2033.19Methyltransferase-like protein n=1 Tax=Actinidia c... [more]
A0A5J9T116_9POAL6.800e-2031.93Methyltransf_11 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig102contigE-siliculosus-1a_F_contig102:38019..41688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size891
Model size1621
Exons4
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG2352@1,KOG2352@2759
EggNOG free text desc.methyltransferase activity
Seed eggNOG ortholog2880.D7FZ50
Seed ortholog evalue5.9e-78
Seed ortholog score297.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig102.189.1prot_E-siliculosus-1a_F_contig102.189.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig102 38700..41639 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.962539-UTR-E-siliculosus-1a_F_contig102:38018..386991622927523.962539-UTR-E-siliculosus-1a_F_contig102:38018..38699Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig102 38019..38699 -
1696318566.4948752-UTR-E-siliculosus-1a_F_contig102:38018..386991696318566.4948752-UTR-E-siliculosus-1a_F_contig102:38018..38699Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig102 38019..38699 -
1622927524.0282004-UTR-E-siliculosus-1a_F_contig102:41639..416881622927524.0282004-UTR-E-siliculosus-1a_F_contig102:41639..41688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig102 41640..41688 -
1696318566.55234-UTR-E-siliculosus-1a_F_contig102:41639..416881696318566.55234-UTR-E-siliculosus-1a_F_contig102:41639..41688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig102 41640..41688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.9773412-CDS-E-siliculosus-1a_F_contig102:38699..391771622927523.9773412-CDS-E-siliculosus-1a_F_contig102:38699..39177Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 38700..39177 -
1696318566.5131788-CDS-E-siliculosus-1a_F_contig102:38699..391771696318566.5131788-CDS-E-siliculosus-1a_F_contig102:38699..39177Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 38700..39177 -
1622927523.9949555-CDS-E-siliculosus-1a_F_contig102:39756..398721622927523.9949555-CDS-E-siliculosus-1a_F_contig102:39756..39872Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 39757..39872 -
1696318566.5238416-CDS-E-siliculosus-1a_F_contig102:39756..398721696318566.5238416-CDS-E-siliculosus-1a_F_contig102:39756..39872Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 39757..39872 -
1622927524.0059648-CDS-E-siliculosus-1a_F_contig102:40664..409271622927524.0059648-CDS-E-siliculosus-1a_F_contig102:40664..40927Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 40665..40927 -
1696318566.5337353-CDS-E-siliculosus-1a_F_contig102:40664..409271696318566.5337353-CDS-E-siliculosus-1a_F_contig102:40664..40927Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 40665..40927 -
1622927524.0162618-CDS-E-siliculosus-1a_F_contig102:41605..416391622927524.0162618-CDS-E-siliculosus-1a_F_contig102:41605..41639Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 41606..41639 -
1696318566.5429337-CDS-E-siliculosus-1a_F_contig102:41605..416391696318566.5429337-CDS-E-siliculosus-1a_F_contig102:41605..41639Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 41606..41639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig102.189.1

>prot_E-siliculosus-1a_F_contig102.189.1 ID=prot_E-siliculosus-1a_F_contig102.189.1|Name=mRNA_E-siliculosus-1a_F_contig102.189.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=297bp
MRGLDAPTRNTDPRTKESRGPEPANHTRSYPMALRNSIASRMRGAATALC
RSAITAERQVAPMRLLRSTTARGEGVQPADTSAEDVTKKFGDPSFWEREY
TGPQGQKAFEWFLSYDGGLKEYILPVLESLVIMPSHSRESHRLLHVGCGT
SEVGPKLAEEPALSSLHVTDIDSSPTAVRLMKKRHPALGNYDCREGDVLN
LDFPAGRFDAVVDKGTLDALLCRSAEDALAMVSEVHRVLRKGGVYVQISA
EDPEARLELLTECGSSSGRGPWSRSIFKELGESEESAAYYMYVLVK*
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mRNA from alignment at E-siliculosus-1a_F_contig102:38019..41688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig102.189.1 ID=mRNA_E-siliculosus-1a_F_contig102.189.1|Name=mRNA_E-siliculosus-1a_F_contig102.189.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3670bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:38019..41688- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGCCCATAGGGGGCAACACGTGTGACCCAGGCGGGCCGGCGACGTGCA
TGCGTGGGCTAGACGCGCCAACAAGAAACACAGGTGAGCAATGCTGTACG
CGTCGTTTTATTCGTACCTCAGATTATTGGTAGCAAGCTATGGAGCAGTG
CGGCCACGGAATCTACTCGTGCACAGACGCGGCGCACGAGCCACATCATA
TCTGCAGTAGACTACACCAACACCAGTCAGCCCCTTCCAGTTGCGCGAAT
TCCATCATAGTCTAACTGGTGTGCTTGCGGTATGATGTAGCCAAGTTGGA
TGTAGCCAAGTTGGATTGTTTTGCTCGCGATTGCCGAATCAGCCGGACTG
CTACGTTTTGTTCAAAATACAGCAGAACTCCGCCGTATACCGGATAGGAA
TGAGAATGAGAGCCTGGAGGCAATGCGGGGGAACTCGAGCAGAATCGAAA
CTCCTGCCGTAAATTAGCCGATACGAGACGTTCCTTCTCGCTGACTGTTG
AATCAAAGCGTGTTGCAGCCGCTTGCAGACACAACCATCTGGCAAAATTA
TCCTCTGCTACTACTGCTGTAGGCAAAATAAGAAAATAAGCAGCCGACAG
CTTACTATGGCAACGAACCACAGAGGAGGTGCGCTCAATAATGAAGCACA
CGTGCCCCCCCTCCCTCTATCTCTCTGTTTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTGTGCTACCTC
CATCACGACAGATCCACGAACCAAAGAAAGCAGAGGGCCCGAGCCGGCCA
ACCACACCAGGTCCTATCCTATGGCTCTTCGAAATTCCATCGCCTCGAGA
ATGCGAGGGGCGGCGACGGCGTTGTGTAGGTCGGCAATAACAGCCGAACG
CCAGGTGGCACCGATGCGACTACTGCGGTCAACGACTGCACGGGGTGAGG
GGGTGCAACCGGCCGACACATCTGCAGAAGATGTGACCAAGAAATTTGGG
GATCCTTCGTTTTGGGAAAGGGAGGTGTGTAGAATCAAACGTTTGAACTA
AAAGGTACTGCTGCGCGTTGATTGTTTATGCTGCTGCAATGTTGAGCCCA
ACAATTCCGGTCTCTTCAACGTTCTACGCTTCGAGAATTGAGATTTTGGT
GAGAGATCAGAAAATGTTGCACGTTGTCGAGAAACGGAGAGTTGGCGACT
GTCGGTTGTTGTAGGTCTGAGGTGATCACTTGCCGTCAACCTCATCGTGT
GTTGCATCTCTATTATGCTTTTACGAGTGTTGACGTGGCGGCAGCTGGAC
CACGACGTACGTATGACTCGATCAACTACATACTACCGCAGTACCGCCGC
TCGCTCGCGAACAAGGTGGTTTTGGCGAGAGGCCTCCTGTTGTTGGTGGT
GTGCTAGACTTGTCTGCTCACTGAGAATCTTCACGCCTTTTCGTTTCCCG
TCCCAAACATCCCAAGCATCATCCGTGCTCGTTGGCGGTCGCTGCTCTTG
GCGCCGCATGTCGTCACAACGCTATACAGTAGCCTTACTTACGAAACTGT
GATGTGTACGGCGTAAGGCTCTGCTGCTGCGTGCACCGCCTTCTTTCCGT
ACCCTAATGGAGCTCGACATTAGTCTGGTTGCCCATATTCATTTACACCA
TGTCACACGCGTATACTACCCGAATATCTGTTTGTCTTGATTTGTGGGTT
GGGGTGAACGTCGACCACCTCACTGTGGATACCCGCCCTGTCTGCGTTTT
GTTGCTCTCTTTCGCTGCACGTGGTTCCATCGGATGGCATGTCTCGGCAC
GGCTTTCCCCCGGCAGTACACCGGCCCCCAAGGCCAGAAGGCATTCGAAT
GGTTCCTGTCATACGATGGAGGGTTGAAAGAATACATTCTTCCTGTATTG
GAGTCATTGGTGATCATGCCCTCCCACTCTCGGTGAGATCGATCACCATA
AGCCATGACCGGCCATAAACTCGCCCAAAATGCATCTACTGGTCGGAATT
AAGATCCGAAGGTGCCCACGTTGATAGGGGGGAAGGTCCTCACGACGGAT
CGGTAACGATCCTGCCCGCGGACTGGGACTACTTGGAAATAGAGAGGCCG
CTGAATAACTCACGTACAGTATCTATCTACCTCCCGTTCTCGTACCGTTG
GCATAGCGAAGGGACGAATGTATCTGGGGCTTGGGTCCATTAGCGTGCAT
CGCTTGAGGTGTACGGACAGTGATAGAAAATGCGACACGCATACACAGGA
TTGATTCCTCACGCACCTCCTCCCAATAACAGCTGCATATGGCACCAGTC
AGACTGAACTCGAAGCCAGTGTGCTATAATCTCTCATTTCCGTCACGAAT
TATGGCCAAACGTCTTGTATGGACCCTTAATGTTTACCAGGCAGCATTGG
TTCCCCTCAGCCCCCCCCCCCCCCCCCCCCCAAGGACGTCCGCGATAACG
CACCACAGCGATCAATTTACACGCCTTCTTTCTCCGGTCCCCCCCAACCC
CGCTCTCCAAGAGAAAGCCACAGGCTTCTCCACGTTGGTTGTGGAACCAG
CGAGGTGGGCCCCAAGCTAGCGGAGGAACCAGCCTTGTCTTCGCTTCACG
TGACGGATATCGACTCCAGCCCCACGGCCGTGAGGCTAATGAAGAAGCGC
CACCCGGCTCTCGGCAACTACGACTGTCGCGAGGGGGATGTTCTCAACCT
TGATTTTCCGGCCGGTCGCTTCGATGCGGTCGTGGACAAGGGGACGCTGG
ACGCCCTCCTGTGTCGAAGCGCTGAGGACGCCCTAGCGATGGTGTCTGAG
GTGCATCGGGTTCTCCGCAAGGGAGGCGTGTACGTCCAGATTTCGGCGGA
GGACCCCGAGGCGCGCTTGGAACTGCTTACGGAATGCGGCAGCAGCTCGG
GGCGTGGGCCATGGTCTCGCTCTATCTTCAAGGAGCTCGGAGAGAGTGAG
GAATCGGCGGCGTACTATATGTACGTCCTCGTCAAGTAGTGTAATTAGTT
CGGATGCGTGTTGTGGTCCGATGTAGAGGGGAAGGCCTCATAGCCCGCGC
GCGTGCTTTCTTTCGTGTTTAGTCTACATGTAGTCGTTTTTGGCTCTGCA
TGGCGATTTTCTAAGATATACGTGCCGACGGCGATTTTCGGGGCTGCGAG
GTGTCTTGCCATTTTGGCAGTCAACCTGCCTTTCCTTTCCTTTCCTTTCC
GACTTCGGTTTGTGGAAACCCCGAGGATATCCGACGAAGCACGTTCCGTG
TACTTCGTATGCTGCTGGCTGTAATTCTCCGTTTGTTTCCTTACGGGTGA
GGTGTGTGTGGCCTCTTGAGCGTTGTTTGTCCCTGATGGCCCAATTTAGC
ATATTGTCCTGATTGGTGTGTTGGTTGATGATTATATTGTTTTGGTGTAG
CCGGTATGCGGGGCTGCTACATTACCCACATATGTATGTCAAAACACTCT
TCGGTATTCGTGCGCTTGCTTCCTGTTGGTTTATCTTCGGCTTGGAGTGT
TAATTCATGGTTGATTTCAACACCCCCTTCAGACATTTCGTAGAACGTGT
AGACTGTTGTTGTTGCTCGAGGTGTGGACGCCTGAGGTTTGATGTTTGTG
CGACGTCTCTTCGGGGCATCTCTCTTTCCGGAGTGGTTCCACTTCTTCTG
TCATGGGTACATGTGAAGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig102:38019..41688-

>mRNA_E-siliculosus-1a_F_contig102.189.1 ID=mRNA_E-siliculosus-1a_F_contig102.189.1|Name=mRNA_E-siliculosus-1a_F_contig102.189.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1782bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:38019..41688- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTGGGCTAGACGCGCCAACAAGAAACACAGATGCGTGGGCTAGACG
CGCCAACAAGAAACACAGATCCACGAACCAAAGAAAGCAGAGGGCCCGAG
CCGGCCAACCACACCAGGTCCTATCCTATGGCTCTTCGAAATTCCATCGC
CTCGAGAATGCGAGGGGCGGCGACGGCGTTGTGTAGGTCGGCAATAACAG
CCGAACGCCAGGTGGCACCGATGCGACTACTGCGGTCAACGACTGCACGG
GGTGAGGGGGTGCAACCGGCCGACACATCTGCAGAAGATGTGACCAAGAA
ATTTGGGGATCCTTCGTTTTGGGAAAGGGAGATCCACGAACCAAAGAAAG
CAGAGGGCCCGAGCCGGCCAACCACACCAGGTCCTATCCTATGGCTCTTC
GAAATTCCATCGCCTCGAGAATGCGAGGGGCGGCGACGGCGTTGTGTAGG
TCGGCAATAACAGCCGAACGCCAGGTGGCACCGATGCGACTACTGCGGTC
AACGACTGCACGGGGTGAGGGGGTGCAACCGGCCGACACATCTGCAGAAG
ATGTGACCAAGAAATTTGGGGATCCTTCGTTTTGGGAAAGGGAGTACACC
GGCCCCCAAGGCCAGAAGGCATTCGAATGGTTCCTGTCATACGATGGAGG
GTTGAAAGAATACATTCTTCCTGTATTGGAGTCATTGGTGATCATGCCCT
CCCACTCTCGTACACCGGCCCCCAAGGCCAGAAGGCATTCGAATGGTTCC
TGTCATACGATGGAGGGTTGAAAGAATACATTCTTCCTGTATTGGAGTCA
TTGGTGATCATGCCCTCCCACTCTCGAGAAAGCCACAGGCTTCTCCACGT
TGGTTGTGGAACCAGCGAGGTGGGCCCCAAGCTAGCGGAGGAACCAGCCT
TGTCTTCGCTTCACGTGACGGATATCGACTCCAGCCCCACGGCCGTGAGG
CTAATGAAGAAGCGCCACCCGGCTCTCGGCAACTACGACTGTCGCGAGGG
GGATGTTCTCAACCTTGATTTTCCGGCCGGTCGCTTCGATGCGGTCGTGG
ACAAGGGGACGCTGGACGCCCTCCTGTGTCGAAGCGCTGAGGACGCCCTA
GCGATGGTGTCTGAGGTGCATCGGGTTCTCCGCAAGGGAGGCGTGTACGT
CCAGATTTCGGCGGAGGACCCCGAGGCGCGCTTGGAACTGCTTACGGAAT
GCGGCAGCAGCTCGGGGCGTGGGCCATGGTCTCGCTCTATCTTCAAGGAG
CTCGGAGAGAGTGAGGAATCGGCGGCGTACTATATGTACGTCCTCGTCAA
GTAGAGAAAGCCACAGGCTTCTCCACGTTGGTTGTGGAACCAGCGAGGTG
GGCCCCAAGCTAGCGGAGGAACCAGCCTTGTCTTCGCTTCACGTGACGGA
TATCGACTCCAGCCCCACGGCCGTGAGGCTAATGAAGAAGCGCCACCCGG
CTCTCGGCAACTACGACTGTCGCGAGGGGGATGTTCTCAACCTTGATTTT
CCGGCCGGTCGCTTCGATGCGGTCGTGGACAAGGGGACGCTGGACGCCCT
CCTGTGTCGAAGCGCTGAGGACGCCCTAGCGATGGTGTCTGAGGTGCATC
GGGTTCTCCGCAAGGGAGGCGTGTACGTCCAGATTTCGGCGGAGGACCCC
GAGGCGCGCTTGGAACTGCTTACGGAATGCGGCAGCAGCTCGGGGCGTGG
GCCATGGTCTCGCTCTATCTTCAAGGAGCTCGGAGAGAGTGAGGAATCGG
CGGCGTACTATATGTACGTCCTCGTCAAGTAG
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