mRNA_E-siliculosus-1a_F_contig1307.1867.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1307.1867.1
Unique NamemRNA_E-siliculosus-1a_F_contig1307.1867.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1307.1867.1 vs. uniprot
Match: D8LQA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA1_ECTSI)

HSP 1 Score: 528 bits (1360), Expect = 4.240e-182
Identity = 322/386 (83.42%), Postives = 325/386 (84.20%), Query Frame = 2 
Query:  110 NVPEGTDEGQKEEARIGEEVXXXXXXXXXXACARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGGRLREVPLSEAQAMAESLRTWRQSFDVRNAFFGGESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDVVGGGEGSSSVEAKGLGLEPGGRSGGEEGSGAMAXXXXXXXXXXXXXXG-CVDRGQRQDGVGEKTHRTLSDQEWSSSRRIVEMAASEAASLTNPVMAAFERERKEAAARQAEIEDAQAARAAAMVKQAXAAAKAGNDEV------------APEDDGELHVGSVVRLGLNDAPGSAAVASAAGLRIAAEGISNLSLRSRDSVENLQERGEQSWGPLPLSSSA 1228
            +VPEGTDEGQKEEARIG+EV           CARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGH P SPADSGGGRLREVPLSEAQAMAESLR WRQSFDVRNAFFG ESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDVVGGGEGSS VEAKGLGLE GGRSGGEEGSGAMA XXXXXXXXXXXXX  CVDRGQRQDGVGEKTHRTLSDQEWSSSRRIVEMAASEAASLTNPVMAAFERERKEAAARQAE+EDAQ           X                        EDDGELHVGSVVRLGLNDAPGS      AGLRIAAEGISNLSLRSRDSVENLQERGEQSWGPLPLSSSA
Sbjct:   94 DVPEGTDEGQKEEARIGKEVVGSGGGKKRRPCARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHGPCSPADSGGGRLREVPLSEAQAMAESLRAWRQSFDVRNAFFG-ESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDVVGGGEGSSGVEAKGLGLELGGRSGGEEGSGAMAGXXXXXXXXXXXXXXXCVDRGQRQDGVGEKTHRTLSDQEWSSSRRIVEMAASEAASLTNPVMAAFERERKEAAARQAEVEDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAEDDGELHVGSVVRLGLNDAPGSXXXXXXAGLRIAAEGISNLSLRSRDSVENLQERGEQSWGPLPLSSSA 478
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BLAST of mRNA_E-siliculosus-1a_F_contig1307.1867.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 499 bits (1284), Expect = 2.310e-166
Identity = 319/389 (82.01%), Postives = 329/389 (84.58%), Query Frame = 2 
Query:  101 GQGNVPEGTDEGQKEEARIGEEVXXXXXXXXXXA-CARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGGRLREVPLSEAQAMAESLRTWRQSFDVRNAFFGGESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDVVGGGEGSSSVEAKGLGLEPGGRSGGEEGSGAMAXXXXXXXXXXXXXXGCVDRGQRQDGVGEKTHRTLSDQEWSSS-RRIVEMAASEAASLTNPVMAAFERERKEAAARQAEIEDAQAARAAAMVKQAXAAAKAGNDEVAP-----------EDDGELHVGSVVRLGLNDAPGSAAVASAAGLRIAAEGISNLSLRSRDSVENLQERGEQSWGPLPLSSSA 1228
            G G+VP+GTDE QK         XXXXXXXXXX  CARASFSVG SGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGG RL+EVPLSEAQAMAESLR WRQSFDVRNA FGGESGDGDAEEDR RAVSLQ QSRSFAR GRATAL TS+TKWT+DVVGGGEGSSSVEA GLGL+PGGRSGGEEGSGAM XXXXXXXXXXXXX   VDRGQRQDGVGEKTHRTLSDQEWSSS RR VEMAASEAASLTNPVMAAFER+RKEAAARQAE+               X   KAGN EVAP           EDDGELH+GSVVRLGLNDAPGSA+ ASAAGLRIAAEGISNLSLRSRDSVENLQE GEQSWGPLPLSSSA
Sbjct:  393 GLGDVPQGTDEEQKXXXXXXXXXXXXXXXXXXXXHCARASFSVGESGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGARLKEVPLSEAQAMAESLRAWRQSFDVRNASFGGESGDGDAEEDRDRAVSLQEQSRSFARIGRATALFTSQTKWTTDVVGGGEGSSSVEATGLGLDPGGRSGGEEGSGAMXXXXXXXXXXXXXXGSRVDRGQRQDGVGEKTHRTLSDQEWSSSSRRTVEMAASEAASLTNPVMAAFERKRKEAAARQAEVXXXXXXXXXXXXXXXXXXXKAGNGEVAPAAGAEGAPAAAEDDGELHMGSVVRLGLNDAPGSASAASAAGLRIAAEGISNLSLRSRDSVENLQEMGEQSWGPLPLSSSA 781
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1307.1867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQA1_ECTSI4.240e-18283.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2B2_9PHAE2.310e-16682.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1307contigE-siliculosus-1a_F_contig1307:25544..27078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1227
Model size1535
Exons1
Ec32 orthologEc-26_005570.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1307.1867.1prot_E-siliculosus-1a_F_contig1307.1867.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1307 25548..26774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.054126-UTR-E-siliculosus-1a_F_contig1307:25543..255471622927829.054126-UTR-E-siliculosus-1a_F_contig1307:25543..25547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1307 25544..25547 +
1696318697.7955859-UTR-E-siliculosus-1a_F_contig1307:25543..255471696318697.7955859-UTR-E-siliculosus-1a_F_contig1307:25543..25547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1307 25544..25547 +
1622927829.0808158-UTR-E-siliculosus-1a_F_contig1307:26774..270781622927829.0808158-UTR-E-siliculosus-1a_F_contig1307:26774..27078Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1307 26775..27078 +
1696318697.8105745-UTR-E-siliculosus-1a_F_contig1307:26774..270781696318697.8105745-UTR-E-siliculosus-1a_F_contig1307:26774..27078Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1307 26775..27078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.0678024-CDS-E-siliculosus-1a_F_contig1307:25547..267741622927829.0678024-CDS-E-siliculosus-1a_F_contig1307:25547..26774Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 25548..26774 +
1696318697.8031378-CDS-E-siliculosus-1a_F_contig1307:25547..267741696318697.8031378-CDS-E-siliculosus-1a_F_contig1307:25547..26774Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 25548..26774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1307.1867.1

>prot_E-siliculosus-1a_F_contig1307.1867.1 ID=prot_E-siliculosus-1a_F_contig1307.1867.1|Name=mRNA_E-siliculosus-1a_F_contig1307.1867.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=409bp
MERERRRQALAPPPPQQQQQQQLEDVVQQAAAGQGNVPEGTDEGQKEEAR
IGEEVVGGGGGKKRRACARASFSVGGSGLAGGGGPDWSPNGGANGTFPLR
RALTFGEVGGGHSPSSPADSGGGRLREVPLSEAQAMAESLRTWRQSFDVR
NAFFGGESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDV
VGGGEGSSSVEAKGLGLEPGGRSGGEEGSGAMAGGGGAASDGSSSGGGCV
DRGQRQDGVGEKTHRTLSDQEWSSSRRIVEMAASEAASLTNPVMAAFERE
RKEAAARQAEIEDAQAARAAAMVKQAAAAAKAGNDEVAPEDDGELHVGSV
VRLGLNDAPGSAAVASAAGLRIAAEGISNLSLRSRDSVENLQERGEQSWG
PLPLSSSA*
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mRNA from alignment at E-siliculosus-1a_F_contig1307:25544..27078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1307.1867.1 ID=mRNA_E-siliculosus-1a_F_contig1307.1867.1|Name=mRNA_E-siliculosus-1a_F_contig1307.1867.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1535bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1307:25544..27078+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGAGATGGAGCGGGAGCGACGCCGGCAAGCCTTGGCACCGCCGCCGCCGC
AGCAGCAGCAGCAGCAGCAGCTCGAGGACGTGGTTCAACAAGCGGCGGCG
GGGCAGGGGAACGTTCCCGAAGGGACGGACGAGGGGCAGAAGGAGGAAGC
GCGCATCGGCGAAGAGGTGGTGGGCGGCGGCGGCGGGAAGAAGAGGAGAG
CCTGCGCGAGAGCGAGCTTCTCCGTCGGGGGGTCAGGCCTTGCCGGAGGC
GGCGGGCCCGACTGGTCGCCGAACGGCGGCGCCAACGGGACCTTTCCCCT
CCGTAGGGCGCTTACGTTCGGCGAGGTCGGCGGCGGCCACAGCCCGTCCT
CACCCGCGGACTCCGGCGGCGGCCGCCTGAGGGAAGTGCCGCTCTCGGAG
GCGCAGGCCATGGCGGAGTCCCTGCGCACCTGGCGCCAGAGTTTCGACGT
TCGGAACGCCTTCTTCGGCGGCGAGTCCGGCGACGGCGATGCGGAGGAAG
ACAGGGGCAGAGCCGTGTCGCTCCAGGTGCAAAGCCGGAGCTTCGCCCGG
AGAGGACGCGCCACGGCTCTGGTTACGTCGCGGACGAAGTGGACTAGCGA
TGTTGTCGGCGGCGGAGAGGGTTCGAGCAGCGTGGAAGCGAAAGGCCTCG
GTCTTGAACCGGGGGGGAGGAGCGGAGGCGAGGAGGGCTCAGGCGCGATG
GCCGGCGGCGGCGGGGCCGCAAGCGACGGCAGCAGCAGCGGCGGGGGCTG
CGTAGACCGGGGCCAACGGCAGGACGGGGTGGGGGAGAAGACACACCGGA
CTCTGAGCGACCAGGAGTGGTCGTCGTCGAGAAGAATAGTCGAGATGGCC
GCCAGCGAAGCCGCATCGCTGACGAACCCGGTCATGGCGGCCTTCGAGCG
GGAGCGCAAGGAGGCCGCCGCGAGGCAGGCGGAGATCGAGGACGCGCAGG
CGGCGAGAGCGGCGGCAATGGTGAAGCAGGCGGCGGCGGCAGCGAAGGCC
GGGAATGACGAGGTGGCTCCGGAGGACGATGGCGAGCTTCATGTGGGGTC
GGTCGTACGGCTGGGCTTGAACGACGCTCCCGGGTCGGCGGCGGTGGCGT
CTGCGGCGGGCCTCCGCATTGCCGCCGAAGGGATATCGAACCTCTCCCTG
AGATCGAGAGACTCGGTGGAGAACCTGCAGGAGAGGGGGGAGCAGTCTTG
GGGGCCGCTGCCTCTGTCATCCTCCGCCTGATTGCCGCTGAGAAGCGGTA
CGTATTATAGTTATCGCCCGGGATTCGTTGGGTGGCGCTTGTGCGCAGGT
AAAGCGTTCTTGGCCATCGTACATCTGGGCGCGTTCAGCGGCAGGTGATG
CGGTATGCATACGGTTTGTGAAAATGCGGGGGGCGCGGCAACACGGCGCA
AGGCTACCGCTCTCTGTCTGTTGGCTTGGGGGATTTATGACTCGGGTGTA
AGGAGTTCAAGGGGGGCATTCACTGGGGCCCGGGGGGCGCAGGGGTTGTG
TTTGTGCGTACTGTACCGGGGTGTTGTTAGGAGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1307:25544..27078+

>mRNA_E-siliculosus-1a_F_contig1307.1867.1 ID=mRNA_E-siliculosus-1a_F_contig1307.1867.1|Name=mRNA_E-siliculosus-1a_F_contig1307.1867.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2454bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1307:25544..27078+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGCGGGAGCGACGCCGGCAAGCCTTGGCACCGCCGCCGCCGCAGCA
GCAGCAGCAGCAGCAGCTCGAGGACGTGGTTCAACAAGCGGCGGCGGGGC
AGGGGAACGTTCCCGAAGGGACGGACGAGGGGCAGAAGGAGGAAGCGCGC
ATCGGCGAAGAGGTGGTGGGCGGCGGCGGCGGGAAGAAGAGGAGAGCCTG
CGCGAGAGCGAGCTTCTCCGTCGGGGGGTCAGGCCTTGCCGGAGGCGGCG
GGCCCGACTGGTCGCCGAACGGCGGCGCCAACGGGACCTTTCCCCTCCGT
AGGGCGCTTACGTTCGGCGAGGTCGGCGGCGGCCACAGCCCGTCCTCACC
CGCGGACTCCGGCGGCGGCCGCCTGAGGGAAGTGCCGCTCTCGGAGGCGC
AGGCCATGGCGGAGTCCCTGCGCACCTGGCGCCAGAGTTTCGACGTTCGG
AACGCCTTCTTCGGCGGCGAGTCCGGCGACGGCGATGCGGAGGAAGACAG
GGGCAGAGCCGTGTCGCTCCAGGTGCAAAGCCGGAGCTTCGCCCGGAGAG
GACGCGCCACGGCTCTGGTTACGTCGCGGACGAAGTGGACTAGCGATGTT
GTCGGCGGCGGAGAGGGTTCGAGCAGCGTGGAAGCGAAAGGCCTCGGTCT
TGAACCGGGGGGGAGGAGCGGAGGCGAGGAGGGCTCAGGCGCGATGGCCG
GCGGCGGCGGGGCCGCAAGCGACGGCAGCAGCAGCGGCGGGGGCTGCGTA
GACCGGGGCCAACGGCAGGACGGGGTGGGGGAGAAGACACACCGGACTCT
GAGCGACCAGGAGTGGTCGTCGTCGAGAAGAATAGTCGAGATGGCCGCCA
GCGAAGCCGCATCGCTGACGAACCCGGTCATGGCGGCCTTCGAGCGGGAG
CGCAAGGAGGCCGCCGCGAGGCAGGCGGAGATCGAGGACGCGCAGGCGGC
GAGAGCGGCGGCAATGGTGAAGCAGGCGGCGGCGGCAGCGAAGGCCGGGA
ATGACGAGGTGGCTCCGGAGGACGATGGCGAGCTTCATGTGGGGTCGGTC
GTACGGCTGGGCTTGAACGACGCTCCCGGGTCGGCGGCGGTGGCGTCTGC
GGCGGGCCTCCGCATTGCCGCCGAAGGGATATCGAACCTCTCCCTGAGAT
CGAGAGACTCGGTGGAGAACCTGCAGGAGAGGGGGGAGCAGTCTTGGGGG
CCGCTGCCTCTGTCATCCTCCGCCTGAATGGAGCGGGAGCGACGCCGGCA
AGCCTTGGCACCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCTCGAGG
ACGTGGTTCAACAAGCGGCGGCGGGGCAGGGGAACGTTCCCGAAGGGACG
GACGAGGGGCAGAAGGAGGAAGCGCGCATCGGCGAAGAGGTGGTGGGCGG
CGGCGGCGGGAAGAAGAGGAGAGCCTGCGCGAGAGCGAGCTTCTCCGTCG
GGGGGTCAGGCCTTGCCGGAGGCGGCGGGCCCGACTGGTCGCCGAACGGC
GGCGCCAACGGGACCTTTCCCCTCCGTAGGGCGCTTACGTTCGGCGAGGT
CGGCGGCGGCCACAGCCCGTCCTCACCCGCGGACTCCGGCGGCGGCCGCC
TGAGGGAAGTGCCGCTCTCGGAGGCGCAGGCCATGGCGGAGTCCCTGCGC
ACCTGGCGCCAGAGTTTCGACGTTCGGAACGCCTTCTTCGGCGGCGAGTC
CGGCGACGGCGATGCGGAGGAAGACAGGGGCAGAGCCGTGTCGCTCCAGG
TGCAAAGCCGGAGCTTCGCCCGGAGAGGACGCGCCACGGCTCTGGTTACG
TCGCGGACGAAGTGGACTAGCGATGTTGTCGGCGGCGGAGAGGGTTCGAG
CAGCGTGGAAGCGAAAGGCCTCGGTCTTGAACCGGGGGGGAGGAGCGGAG
GCGAGGAGGGCTCAGGCGCGATGGCCGGCGGCGGCGGGGCCGCAAGCGAC
GGCAGCAGCAGCGGCGGGGGCTGCGTAGACCGGGGCCAACGGCAGGACGG
GGTGGGGGAGAAGACACACCGGACTCTGAGCGACCAGGAGTGGTCGTCGT
CGAGAAGAATAGTCGAGATGGCCGCCAGCGAAGCCGCATCGCTGACGAAC
CCGGTCATGGCGGCCTTCGAGCGGGAGCGCAAGGAGGCCGCCGCGAGGCA
GGCGGAGATCGAGGACGCGCAGGCGGCGAGAGCGGCGGCAATGGTGAAGC
AGGCGGCGGCGGCAGCGAAGGCCGGGAATGACGAGGTGGCTCCGGAGGAC
GATGGCGAGCTTCATGTGGGGTCGGTCGTACGGCTGGGCTTGAACGACGC
TCCCGGGTCGGCGGCGGTGGCGTCTGCGGCGGGCCTCCGCATTGCCGCCG
AAGGGATATCGAACCTCTCCCTGAGATCGAGAGACTCGGTGGAGAACCTG
CAGGAGAGGGGGGAGCAGTCTTGGGGGCCGCTGCCTCTGTCATCCTCCGC
CTGA
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